Wall clock time and date at job start Wed Apr 1 2020 03:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38678 * 120.41675 * 2 1 4 4 C 1.38627 * 118.41930 * 180.24221 * 3 2 1 5 5 C 1.38232 * 119.16085 * 359.75178 * 4 3 2 6 6 C 1.50702 * 119.61830 * 179.97438 * 5 4 3 7 7 N 1.46898 * 109.47164 * 95.01929 * 6 5 4 8 8 C 1.47592 * 110.99892 * 266.11023 * 7 6 5 9 9 C 1.52892 * 87.78621 * 221.75948 * 8 7 6 10 10 C 1.47594 * 111.00261 * 170.00032 * 7 6 5 11 11 C 1.52448 * 114.27055 * 271.58561 * 9 8 7 12 12 N 1.46289 * 109.56406 * 272.35168 * 11 9 8 13 13 C 1.46498 * 118.72966 * 164.04065 * 12 11 9 14 14 C 1.53004 * 109.47482 * 89.99784 * 13 12 11 15 15 C 1.50696 * 109.47345 * 180.02562 * 14 13 12 16 16 H 1.08001 * 120.00265 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00072 * 180.02562 * 15 14 13 18 18 N 1.31520 * 119.99937 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00170 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47250 * 59.99512 * 19 17 15 21 21 H 1.48498 * 109.47043 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46983 * 299.99763 * 19 17 15 23 23 C 1.33717 * 122.54607 * 344.01598 * 12 11 9 24 24 O 1.21284 * 118.36242 * 183.34693 * 23 12 11 25 25 C 1.50159 * 123.27722 * 3.36933 * 23 12 11 26 26 O 1.42563 * 114.25766 * 139.69306 * 9 8 7 27 27 N 1.31857 * 120.76541 * 359.97438 * 5 4 3 28 28 C 1.31889 * 121.72235 * 0.02562 * 27 5 4 29 29 H 1.09007 * 109.47201 * 270.25231 * 1 2 3 30 30 H 1.09001 * 109.47428 * 30.24997 * 1 2 3 31 31 H 1.08996 * 109.47062 * 150.25696 * 1 2 3 32 32 H 1.07994 * 120.78944 * 359.96926 * 3 2 1 33 33 H 1.07997 * 120.42083 * 179.72800 * 4 3 2 34 34 H 1.09002 * 109.47085 * 215.02006 * 6 5 4 35 35 H 1.09000 * 109.46752 * 335.01898 * 6 5 4 36 36 H 1.09001 * 113.50163 * 336.48734 * 8 7 6 37 37 H 1.09003 * 113.49867 * 107.03651 * 8 7 6 38 38 H 1.08996 * 113.50401 * 252.97103 * 10 7 6 39 39 H 1.09008 * 113.49412 * 23.51208 * 10 7 6 40 40 H 1.09005 * 109.45682 * 32.37103 * 11 9 8 41 41 H 1.08999 * 109.46144 * 152.32342 * 11 9 8 42 42 H 1.09005 * 109.47494 * 209.99951 * 13 12 11 43 43 H 1.09004 * 109.47332 * 329.99771 * 13 12 11 44 44 H 1.08999 * 109.46538 * 300.00339 * 14 13 12 45 45 H 1.09000 * 109.46446 * 59.99976 * 14 13 12 46 46 H 0.96998 * 120.00201 * 180.02562 * 18 17 15 47 47 H 1.09006 * 109.34249 * 102.48137 * 25 23 12 48 48 H 1.08999 * 109.34675 * 222.02328 * 25 23 12 49 49 H 1.08002 * 119.61237 * 179.97438 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1959 0.0000 4 6 3.5945 1.1476 -0.0052 5 6 4.2256 -0.0823 -0.0049 6 6 5.7312 -0.1468 -0.0110 7 7 6.2210 -0.2855 1.3669 8 6 6.5445 1.0319 1.9484 9 6 7.7958 0.3925 2.5509 10 6 7.6651 -0.5900 1.3869 11 6 7.5809 -0.2315 3.9252 12 7 7.7834 0.7821 4.9604 13 6 7.2926 0.5135 6.3144 14 6 8.3885 -0.1804 7.1259 15 6 7.8834 -0.4572 8.5184 16 1 6.8812 -0.1669 8.7971 17 6 8.7012 -1.0802 9.4372 18 7 9.9218 -1.4334 9.0981 19 14 8.0754 -1.4227 11.1636 20 1 6.8810 -2.3022 11.0918 21 1 9.1390 -2.0963 11.9511 22 1 7.7084 -0.1423 11.8202 23 6 8.3995 1.9440 4.7189 24 8 8.5813 2.7036 5.6468 25 6 8.8771 2.3556 3.3561 26 8 8.9586 1.2155 2.4958 27 7 3.5255 -1.1996 0.0008 28 6 2.2066 -1.1916 0.0058 29 1 -0.3634 0.0045 1.0277 30 1 -0.3634 0.8877 -0.5177 31 1 -0.3633 -0.8922 -0.5098 32 1 1.6889 2.1423 -0.0005 33 1 4.1734 2.0593 -0.0097 34 1 6.0557 -1.0046 -0.6001 35 1 6.1322 0.7673 -0.4489 36 1 6.7631 1.7949 1.2013 37 1 5.8245 1.3659 2.6955 38 1 7.8882 -1.6210 1.6612 39 1 8.1893 -0.2694 0.4865 40 1 6.5651 -0.6209 3.9923 41 1 8.2917 -1.0451 4.0698 42 1 7.0235 1.4534 6.7965 43 1 6.4157 -0.1318 6.2617 44 1 8.6575 -1.1202 6.6438 45 1 9.2653 0.4650 7.1785 46 1 10.4970 -1.8720 9.7443 47 1 8.1802 3.0789 2.9325 48 1 9.8622 2.8142 3.4419 49 1 1.6672 -2.1273 0.0099 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273231083.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:04 Heat of formation + Delta-G solvation = -22.758542 kcal Electronic energy + Delta-G solvation = -30147.185845 eV Core-core repulsion = 26074.663659 eV Total energy + Delta-G solvation = -4072.522186 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.54996 -41.22273 -40.49187 -37.97122 -37.01974 -35.17063 -34.86946 -33.25312 -32.20558 -31.41556 -29.39111 -28.51934 -27.22751 -26.76731 -26.33007 -24.83050 -24.13316 -23.33851 -22.18954 -21.34768 -19.34137 -18.97435 -18.73573 -17.72800 -17.62915 -17.30460 -17.02436 -16.97950 -16.50953 -16.19965 -15.97232 -15.85262 -15.35331 -15.16678 -14.91695 -14.78813 -14.51365 -14.34459 -14.30286 -14.02831 -13.93640 -13.60412 -13.50106 -13.35659 -13.24524 -13.16256 -12.85013 -12.76783 -12.56527 -12.41164 -12.21169 -11.99400 -11.89706 -11.73084 -11.49955 -11.17956 -10.67844 -10.60735 -10.47117 -10.33678 -10.05342 -9.72631 -9.65536 -8.24544 -6.37717 0.15190 0.39562 1.37219 1.42169 1.45122 1.50025 1.80546 2.35438 2.40450 2.73475 3.05252 3.08510 3.18236 3.25145 3.35855 3.60590 3.80414 3.92695 3.97082 4.01370 4.12516 4.12881 4.16747 4.25277 4.32871 4.38813 4.41848 4.50170 4.51704 4.59472 4.64317 4.66684 4.69474 4.79243 4.82064 4.83327 4.88369 4.92874 5.07311 5.13829 5.21109 5.29031 5.39453 5.40366 5.52879 5.71999 5.78549 5.82045 5.89475 6.13402 6.41102 6.76921 7.03563 7.12232 7.31730 8.87698 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011307 B = 0.002477 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2475.690782 B =11299.550896 C =12668.889591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.144 4.144 3 C -0.085 4.085 4 C -0.164 4.164 5 C 0.114 3.886 6 C 0.074 3.926 7 N -0.468 5.468 8 C -0.013 4.013 9 C 0.063 3.937 10 C 0.035 3.965 11 C 0.117 3.883 12 N -0.599 5.599 13 C 0.130 3.870 14 C 0.028 3.972 15 C -0.546 4.546 16 H 0.065 0.935 17 C -0.001 4.001 18 N -0.933 5.933 19 Si 0.972 3.028 20 H -0.260 1.260 21 H -0.282 1.282 22 H -0.269 1.269 23 C 0.468 3.532 24 O -0.592 6.592 25 C 0.065 3.935 26 O -0.354 6.354 27 N -0.497 5.497 28 C 0.080 3.920 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.156 0.844 33 H 0.151 0.849 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.110 0.890 37 H 0.080 0.920 38 H 0.103 0.897 39 H 0.111 0.889 40 H 0.101 0.899 41 H 0.067 0.933 42 H 0.059 0.941 43 H 0.085 0.915 44 H -0.005 1.005 45 H -0.025 1.025 46 H 0.265 0.735 47 H 0.121 0.879 48 H 0.140 0.860 49 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.869 5.100 -27.377 32.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.146 4.146 3 C -0.111 4.111 4 C -0.184 4.184 5 C -0.024 4.024 6 C -0.054 4.054 7 N -0.192 5.192 8 C -0.142 4.142 9 C 0.022 3.978 10 C -0.094 4.094 11 C -0.005 4.005 12 N -0.330 5.330 13 C 0.008 3.992 14 C -0.010 4.010 15 C -0.584 4.584 16 H 0.084 0.916 17 C -0.199 4.199 18 N -0.573 5.573 19 Si 0.796 3.204 20 H -0.184 1.184 21 H -0.207 1.207 22 H -0.194 1.194 23 C 0.257 3.743 24 O -0.474 6.474 25 C -0.014 4.014 26 O -0.272 6.272 27 N -0.206 5.206 28 C -0.077 4.077 29 H 0.095 0.905 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.174 0.826 33 H 0.169 0.831 34 H 0.113 0.887 35 H 0.107 0.893 36 H 0.128 0.872 37 H 0.098 0.902 38 H 0.122 0.878 39 H 0.129 0.871 40 H 0.119 0.881 41 H 0.085 0.915 42 H 0.077 0.923 43 H 0.103 0.897 44 H 0.014 0.986 45 H -0.006 1.006 46 H 0.073 0.927 47 H 0.138 0.862 48 H 0.158 0.842 49 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -15.508 4.096 -26.705 31.151 hybrid contribution 0.115 0.901 1.056 1.393 sum -15.393 4.997 -25.648 30.327 Atomic orbital electron populations 1.20770 0.88349 1.04176 1.03212 1.21267 0.99052 0.93954 1.00302 1.21838 0.94038 0.99197 0.95989 1.22213 0.95850 0.99099 1.01283 1.21168 0.96329 0.88745 0.96145 1.21578 0.89334 1.03860 0.90673 1.68953 1.14947 1.17979 1.17345 1.24562 0.95621 0.93662 1.00305 1.22839 0.86575 0.94108 0.94310 1.23884 0.88892 1.00143 0.96451 1.21742 1.03545 0.90500 0.84715 1.47753 1.56590 1.17300 1.11385 1.21493 0.97122 0.99826 0.80795 1.19132 0.93653 0.93666 0.94592 1.21504 1.00384 1.38970 0.97521 0.91642 1.26054 0.94913 0.95138 1.03796 1.70118 1.08683 1.41525 1.36965 0.85400 0.78250 0.78737 0.78054 1.18448 1.20678 1.19384 1.21744 0.77812 0.81418 0.93303 1.90731 1.57621 1.52783 1.46241 1.22777 1.05883 0.89375 0.83333 1.88077 1.39329 1.36957 1.62828 1.67427 1.09086 1.32144 1.11944 1.23000 0.89551 0.98788 0.96352 0.90502 0.90118 0.90226 0.82619 0.83135 0.88723 0.89266 0.87235 0.90169 0.87832 0.87107 0.88070 0.91482 0.92275 0.89700 0.98642 1.00634 0.92660 0.86161 0.84225 0.81739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 10.04 71.23 0.71 -0.15 16 2 C -0.14 -2.00 5.90 -19.77 -0.12 -2.12 16 3 C -0.08 -1.11 9.86 22.47 0.22 -0.89 16 4 C -0.16 -2.37 9.72 22.36 0.22 -2.16 16 5 C 0.11 2.09 6.37 42.55 0.27 2.36 16 6 C 0.07 1.09 5.12 85.56 0.44 1.53 16 7 N -0.47 -8.44 6.15 -933.30 -5.74 -14.18 16 8 C -0.01 -0.22 6.54 83.69 0.55 0.33 16 9 C 0.06 1.37 1.29 -11.05 -0.01 1.35 16 10 C 0.03 0.58 7.12 83.69 0.60 1.18 16 11 C 0.12 3.48 5.85 86.24 0.50 3.98 16 12 N -0.60 -22.68 2.84 -825.67 -2.34 -25.02 16 13 C 0.13 5.88 5.20 86.38 0.45 6.33 16 14 C 0.03 1.57 5.29 29.85 0.16 1.73 16 15 C -0.55 -32.58 9.11 25.60 0.23 -32.35 16 16 H 0.07 3.69 7.74 -2.91 -0.02 3.66 16 17 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 18 N -0.93 -59.36 13.29 21.45 0.28 -59.08 16 19 Si 0.97 45.77 29.54 68.60 2.03 47.80 16 20 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 21 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 22 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 23 C 0.47 17.60 7.57 87.65 0.66 18.26 16 24 O -0.59 -28.11 16.33 -3.04 -0.05 -28.16 16 25 C 0.07 1.62 6.70 71.07 0.48 2.09 16 26 O -0.35 -8.40 10.68 -148.98 -1.59 -9.99 16 27 N -0.50 -10.85 10.27 -183.88 -1.89 -12.74 16 28 C 0.08 1.42 10.86 84.67 0.92 2.34 16 29 H 0.08 0.60 8.14 -2.38 -0.02 0.58 16 30 H 0.08 0.44 8.10 -2.39 -0.02 0.42 16 31 H 0.08 0.49 8.09 -2.39 -0.02 0.47 16 32 H 0.16 1.20 8.06 -2.91 -0.02 1.18 16 33 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 34 H 0.09 1.40 8.08 -2.39 -0.02 1.38 16 35 H 0.09 0.84 7.20 -2.39 -0.02 0.83 16 36 H 0.11 1.29 7.42 -2.39 -0.02 1.27 16 37 H 0.08 1.61 8.11 -2.39 -0.02 1.59 16 38 H 0.10 1.77 8.11 -2.39 -0.02 1.75 16 39 H 0.11 1.36 7.91 -2.38 -0.02 1.34 16 40 H 0.10 2.85 7.83 -2.38 -0.02 2.83 16 41 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 42 H 0.06 2.86 7.29 -2.38 -0.02 2.84 16 43 H 0.08 3.46 7.97 -2.38 -0.02 3.44 16 44 H 0.00 -0.29 8.14 -2.39 -0.02 -0.31 16 45 H -0.02 -1.63 8.14 -2.39 -0.02 -1.65 16 46 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 47 H 0.12 2.15 7.99 -2.38 -0.02 2.13 16 48 H 0.14 3.18 8.14 -2.39 -0.02 3.16 16 49 H 0.17 2.24 8.06 -2.91 -0.02 2.21 16 Total: -1.00 -82.41 403.45 -1.62 -84.04 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: 0.94 Total: 13.11 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: 6.74 Total: 4.22 kcal Atomic # 7 Polarization: -101.34 SS G_CDS: -9.69 Total: -111.02 kcal Atomic # 8 Polarization: -36.50 SS G_CDS: -1.64 Total: -38.14 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -82.41 -1.62 -84.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273231083.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.277 kcal (2) G-P(sol) polarization free energy of solvation -82.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds