Wall clock time and date at job start Wed Apr 1 2020 06:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 110.28838 * 2 1 4 4 N 1.46504 * 109.47434 * 302.13798 * 3 2 1 5 5 C 1.36936 * 120.00436 * 180.02562 * 4 3 2 6 6 H 1.08005 * 119.99728 * 359.97438 * 5 4 3 7 7 C 1.38806 * 120.00299 * 180.02562 * 5 4 3 8 8 N 1.31616 * 119.99983 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00085 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46931 * 59.99912 * 9 7 5 11 11 H 1.48503 * 109.47174 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47569 * 299.99765 * 9 7 5 13 13 C 1.54620 * 110.32658 * 237.76080 * 2 1 3 14 14 C 1.54592 * 102.90728 * 262.80408 * 13 2 1 15 15 N 1.48110 * 103.42622 * 322.86455 * 14 13 2 16 16 C 1.34778 * 127.03681 * 219.28822 * 15 14 13 17 17 O 1.21287 * 119.99992 * 179.68588 * 16 15 14 18 18 C 1.50698 * 120.00115 * 359.68226 * 16 15 14 19 19 N 1.46493 * 109.47082 * 179.97438 * 18 16 15 20 20 C 1.34784 * 119.99864 * 180.02562 * 19 18 16 21 21 O 1.21552 * 119.99772 * 359.72918 * 20 19 18 22 22 C 1.47842 * 120.00082 * 179.72666 * 20 19 18 23 23 C 1.39581 * 120.14360 * 359.72300 * 22 20 19 24 24 C 1.37955 * 119.84955 * 179.74226 * 23 22 20 25 25 C 1.38360 * 120.14893 * 0.53771 * 24 23 22 26 26 C 1.38364 * 120.29025 * 359.73957 * 25 24 23 27 27 C 1.37967 * 120.14264 * 359.97438 * 26 25 24 28 28 C 1.47488 * 105.93198 * 39.02769 * 15 14 13 29 29 H 1.08999 * 109.46567 * 297.86227 * 1 2 3 30 30 H 1.08997 * 109.47049 * 57.86042 * 1 2 3 31 31 H 1.08994 * 109.46478 * 177.86420 * 1 2 3 32 32 H 1.09003 * 109.47296 * 62.13396 * 3 2 1 33 33 H 1.09000 * 109.47538 * 182.14033 * 3 2 1 34 34 H 0.97007 * 119.99675 * 359.97438 * 4 3 2 35 35 H 0.97003 * 119.99999 * 180.02562 * 8 7 5 36 36 H 1.09005 * 110.73585 * 21.28875 * 13 2 1 37 37 H 1.08993 * 110.73980 * 144.43728 * 13 2 1 38 38 H 1.09008 * 110.61578 * 204.35249 * 14 13 2 39 39 H 1.09005 * 110.54989 * 81.35410 * 14 13 2 40 40 H 1.09007 * 109.46606 * 60.00104 * 18 16 15 41 41 H 1.09006 * 109.47204 * 300.00561 * 18 16 15 42 42 H 0.97000 * 120.00740 * 359.72841 * 19 18 16 43 43 H 1.07995 * 120.07371 * 0.02562 * 23 22 20 44 44 H 1.08002 * 119.92829 * 180.27238 * 24 23 22 45 45 H 1.07999 * 119.85616 * 179.76027 * 25 24 23 46 46 H 1.07998 * 119.92639 * 179.97438 * 26 25 24 47 47 H 1.07996 * 120.07062 * 180.02562 * 27 26 25 48 48 H 1.09005 * 109.91394 * 94.13323 * 28 15 14 49 49 H 1.08994 * 109.91432 * 215.41745 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0606 1.4351 0.0000 4 7 1.5408 2.1480 -1.1696 5 6 1.8832 3.4567 -1.3818 6 1 2.5361 3.9636 -0.6866 7 6 1.3902 4.1323 -2.4896 8 7 0.5941 3.5148 -3.3365 9 14 1.8567 5.9179 -2.7786 10 1 3.3311 6.0279 -2.9180 11 1 1.2048 6.4050 -4.0208 12 1 1.4057 6.7400 -1.6273 13 6 2.0672 -0.7735 -1.2264 14 6 2.3641 -2.1757 -0.6473 15 7 2.8806 -1.8850 0.7100 16 6 3.8925 -2.5093 1.3446 17 8 4.2153 -2.1610 2.4606 18 6 4.6229 -3.6403 0.6675 19 7 5.6709 -4.1467 1.5570 20 6 6.4582 -5.1658 1.1591 21 8 6.2953 -5.6679 0.0642 22 6 7.5198 -5.6730 2.0544 23 6 7.7132 -5.0948 3.3100 24 6 8.7022 -5.5763 4.1426 25 6 9.5086 -6.6225 3.7312 26 6 9.3259 -7.1964 2.4854 27 6 8.3366 -6.7282 1.6454 28 6 2.0651 -0.7681 1.2228 29 1 -0.3632 0.4803 0.9086 30 1 -0.3633 0.5467 -0.8702 31 1 -0.3632 -1.0269 -0.0383 32 1 1.7361 1.9425 0.9085 33 1 3.1498 1.4199 -0.0384 34 1 0.9546 1.6926 -1.7941 35 1 0.2499 3.9868 -4.1109 36 1 1.3105 -0.8295 -2.0090 37 1 2.9788 -0.3115 -1.6051 38 1 3.1196 -2.6858 -1.2451 39 1 1.4509 -2.7684 -0.5927 40 1 5.0743 -3.2795 -0.2568 41 1 3.9202 -4.4420 0.4398 42 1 5.8012 -3.7459 2.4306 43 1 7.0871 -4.2754 3.6307 44 1 8.8501 -5.1327 5.1162 45 1 10.2839 -6.9932 4.3853 46 1 9.9590 -8.0125 2.1700 47 1 8.1948 -7.1772 0.6735 48 1 1.2331 -1.1554 1.8111 49 1 2.6810 -0.1092 1.8348 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278573385.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:26:53 Heat of formation + Delta-G solvation = -28.149632 kcal Electronic energy + Delta-G solvation = -29190.190458 eV Core-core repulsion = 25117.434497 eV Total energy + Delta-G solvation = -4072.755961 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -40.76770 -40.11357 -38.70461 -38.08412 -34.94404 -34.80857 -32.83240 -31.81090 -31.35056 -30.40015 -29.51489 -28.53937 -26.32293 -25.37427 -23.94222 -23.18344 -22.81354 -22.39282 -20.80653 -19.80007 -18.98147 -18.33838 -17.26032 -17.05068 -16.53628 -16.37948 -16.22009 -15.66351 -15.44952 -14.84721 -14.80882 -14.63446 -14.27966 -14.05321 -13.97307 -13.75673 -13.52799 -13.42797 -13.20741 -12.91676 -12.59982 -12.56335 -12.36649 -12.15625 -12.10461 -11.78377 -11.52578 -11.42324 -11.04105 -10.82189 -10.67471 -10.38457 -10.34030 -10.30539 -10.14538 -9.95297 -9.67881 -9.60189 -9.43240 -9.32727 -8.89375 -8.81742 -6.94075 -5.79017 -3.07058 0.43630 0.93240 2.34526 2.43665 2.51911 3.06301 3.43098 3.47730 3.47949 3.48459 4.13598 4.30044 4.40488 4.50563 4.55655 4.67467 4.70193 4.79410 4.93420 4.96122 5.02868 5.06612 5.09019 5.23350 5.35847 5.36808 5.43250 5.54284 5.56934 5.68685 5.78972 5.83181 5.86793 5.88851 5.95538 5.97872 6.00653 6.04556 6.18300 6.24821 6.36621 6.43484 6.46568 6.63321 6.74022 6.81527 7.13046 7.35101 7.68312 7.81343 7.88444 8.40292 9.51899 10.08643 10.44019 11.43749 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018679 B = 0.001793 C = 0.001750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.671668 B =15613.371573 C =15994.901154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.080 4.080 3 C 0.167 3.833 4 N -0.728 5.728 5 C -0.240 4.240 6 H 0.069 0.931 7 C -0.013 4.013 8 N -0.934 5.934 9 Si 0.907 3.093 10 H -0.287 1.287 11 H -0.291 1.291 12 H -0.286 1.286 13 C -0.119 4.119 14 C 0.093 3.907 15 N -0.611 5.611 16 C 0.527 3.473 17 O -0.545 6.545 18 C 0.105 3.895 19 N -0.714 5.714 20 C 0.561 3.439 21 O -0.537 6.537 22 C -0.134 4.134 23 C -0.084 4.084 24 C -0.127 4.127 25 C -0.094 4.094 26 C -0.130 4.130 27 C -0.059 4.059 28 C 0.117 3.883 29 H 0.055 0.945 30 H 0.074 0.926 31 H 0.047 0.953 32 H 0.021 0.979 33 H 0.019 0.981 34 H 0.385 0.615 35 H 0.255 0.745 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.102 0.898 41 H 0.101 0.899 42 H 0.412 0.588 43 H 0.129 0.871 44 H 0.130 0.870 45 H 0.127 0.873 46 H 0.130 0.870 47 H 0.137 0.863 48 H 0.069 0.931 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.585 -22.815 12.728 28.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.081 4.081 3 C 0.039 3.961 4 N -0.373 5.373 5 C -0.371 4.371 6 H 0.087 0.913 7 C -0.209 4.209 8 N -0.582 5.582 9 Si 0.738 3.262 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.213 1.213 13 C -0.157 4.157 14 C -0.029 4.029 15 N -0.344 5.344 16 C 0.315 3.685 17 O -0.423 6.423 18 C -0.022 4.022 19 N -0.369 5.369 20 C 0.349 3.651 21 O -0.415 6.415 22 C -0.137 4.137 23 C -0.103 4.103 24 C -0.145 4.145 25 C -0.113 4.113 26 C -0.148 4.148 27 C -0.078 4.078 28 C -0.005 4.005 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.066 0.934 32 H 0.038 0.962 33 H 0.037 0.963 34 H 0.219 0.781 35 H 0.065 0.935 36 H 0.106 0.894 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.095 0.905 40 H 0.120 0.880 41 H 0.119 0.881 42 H 0.251 0.749 43 H 0.147 0.853 44 H 0.148 0.852 45 H 0.145 0.855 46 H 0.148 0.852 47 H 0.155 0.845 48 H 0.088 0.912 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 11.746 -22.844 12.599 28.610 hybrid contribution 0.030 1.195 -0.045 1.197 sum 11.776 -21.648 12.554 27.657 Atomic orbital electron populations 1.21819 0.93156 1.00746 1.03312 1.21670 0.96528 0.96501 0.93409 1.20697 0.95725 0.88101 0.91550 1.42337 1.58389 1.10687 1.25885 1.19178 1.23841 0.87890 1.06175 0.91339 1.24706 1.00184 0.98287 0.97681 1.69635 1.37220 1.36333 1.15054 0.86273 0.77828 0.84989 0.77121 1.21328 1.21699 1.21307 1.22723 1.02870 0.92813 0.97330 1.22704 0.99299 0.98827 0.82087 1.48717 1.32742 1.34832 1.18138 1.20000 0.79370 0.83301 0.85832 1.90692 1.65998 1.66215 1.19399 1.21049 0.91172 0.95941 0.94072 1.45624 1.34297 1.35776 1.21224 1.18258 0.81174 0.79287 0.86387 1.90786 1.70659 1.58370 1.21669 1.19879 0.98694 0.99743 0.95404 1.21420 0.97415 0.98614 0.92847 1.21151 0.95877 0.97380 1.00124 1.21421 0.98380 0.95356 0.96110 1.21191 0.98504 1.00705 0.94358 1.21308 0.92792 0.93836 0.99861 1.22212 0.94143 0.87568 0.96607 0.92623 0.90733 0.93400 0.96151 0.96287 0.78055 0.93487 0.89423 0.89999 0.90052 0.90460 0.87991 0.88119 0.74917 0.85301 0.85214 0.85493 0.85211 0.84527 0.91244 0.90198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.88 8.04 37.16 0.30 -1.58 16 2 C -0.08 -1.18 0.67 -153.13 -0.10 -1.28 16 3 C 0.17 3.23 4.85 -4.04 -0.02 3.21 16 4 N -0.73 -17.50 5.12 -59.91 -0.31 -17.81 16 5 C -0.24 -6.57 9.99 -15.06 -0.15 -6.72 16 6 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 7 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 8 N -0.93 -27.46 13.06 55.49 0.72 -26.73 16 9 Si 0.91 22.21 29.55 -169.99 -5.02 17.19 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 13 C -0.12 -1.60 5.72 -25.04 -0.14 -1.75 16 14 C 0.09 0.97 6.93 -2.32 -0.02 0.95 16 15 N -0.61 -7.48 3.29 -169.98 -0.56 -8.04 16 16 C 0.53 6.65 7.96 -10.99 -0.09 6.56 16 17 O -0.54 -8.32 16.01 5.55 0.09 -8.24 16 18 C 0.10 1.09 5.09 -5.20 -0.03 1.07 16 19 N -0.71 -7.55 5.48 -62.43 -0.34 -7.90 16 20 C 0.56 6.48 7.77 -12.33 -0.10 6.39 16 21 O -0.54 -7.68 16.35 5.32 0.09 -7.60 16 22 C -0.13 -1.29 5.87 -104.97 -0.62 -1.91 16 23 C -0.08 -0.66 9.54 -39.18 -0.37 -1.03 16 24 C -0.13 -0.82 10.03 -39.64 -0.40 -1.22 16 25 C -0.09 -0.56 10.04 -39.49 -0.40 -0.96 16 26 C -0.13 -0.85 10.03 -39.63 -0.40 -1.25 16 27 C -0.06 -0.51 9.60 -39.18 -0.38 -0.89 16 28 C 0.12 1.57 6.29 -2.98 -0.02 1.55 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.07 1.25 6.75 -51.93 -0.35 0.90 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.02 0.39 8.11 -51.93 -0.42 -0.03 16 34 H 0.38 9.53 6.18 -40.82 -0.25 9.28 16 35 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 36 H 0.09 1.17 7.85 -51.93 -0.41 0.77 16 37 H 0.08 1.27 7.85 -51.93 -0.41 0.86 16 38 H 0.08 0.70 7.23 -51.92 -0.38 0.33 16 39 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.10 1.03 7.90 -51.93 -0.41 0.62 16 41 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.41 4.08 5.47 -40.82 -0.22 3.86 16 43 H 0.13 0.86 6.41 -52.49 -0.34 0.52 16 44 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 45 H 0.13 0.45 8.06 -52.49 -0.42 0.02 16 46 H 0.13 0.56 8.06 -52.49 -0.42 0.13 16 47 H 0.14 1.18 7.65 -52.49 -0.40 0.77 16 48 H 0.07 0.85 7.68 -51.93 -0.40 0.45 16 49 H 0.08 1.18 7.59 -51.93 -0.39 0.78 16 LS Contribution 401.80 15.07 6.06 6.06 Total: -1.00 -33.55 401.80 -9.60 -43.15 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: -7.31 Total: 9.23 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: -3.02 Total: 0.69 kcal Atomic # 7 Polarization: -59.99 SS G_CDS: -0.48 Total: -60.48 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: 0.18 Total: -15.83 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.55 -9.60 -43.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278573385.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.996 kcal (2) G-P(sol) polarization free energy of solvation -33.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds