Wall clock time and date at job start Wed Apr 1 2020 03:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38223 * 120.42065 * 2 1 4 4 N 1.31852 * 120.76447 * 180.02562 * 3 2 1 5 5 C 1.31887 * 121.72685 * 359.97438 * 4 3 2 6 6 C 1.50704 * 119.61941 * 179.97438 * 5 4 3 7 7 N 1.46504 * 109.46924 * 89.99986 * 6 5 4 8 8 C 1.34773 * 119.99807 * 180.02562 * 7 6 5 9 9 O 1.21352 * 120.00257 * 359.97438 * 8 7 6 10 10 C 1.49450 * 120.00116 * 180.02562 * 8 7 6 11 11 O 1.21351 * 120.00092 * 6.33885 * 10 8 7 12 12 N 1.34783 * 120.00161 * 186.34094 * 10 8 7 13 13 C 1.46927 * 120.62661 * 7.03563 * 12 10 8 14 14 C 1.53194 * 108.77159 * 233.58267 * 13 12 10 15 15 C 1.53037 * 109.31608 * 305.36623 * 14 13 12 16 16 C 1.53047 * 109.53614 * 61.36830 * 15 14 13 17 17 H 1.08998 * 109.49647 * 58.61492 * 16 15 14 18 18 C 1.50694 * 109.49793 * 178.68608 * 16 15 14 19 19 H 1.07998 * 119.99957 * 2.47888 * 18 16 15 20 20 C 1.37877 * 120.00069 * 182.48063 * 18 16 15 21 21 N 1.31510 * 120.00247 * 354.23927 * 20 18 16 22 22 Si 1.86801 * 120.00165 * 174.23489 * 20 18 16 23 23 H 1.48499 * 109.47163 * 95.00536 * 22 20 18 24 24 H 1.48500 * 109.47424 * 215.00477 * 22 20 18 25 25 H 1.48503 * 109.47149 * 335.00458 * 22 20 18 26 26 C 1.46922 * 120.62900 * 186.75504 * 12 10 8 27 27 C 1.38177 * 120.76377 * 0.25804 * 5 4 3 28 28 C 1.50698 * 120.42061 * 179.74518 * 27 5 4 29 29 C 1.38633 * 120.42027 * 180.02562 * 2 1 3 30 30 H 1.09001 * 109.46954 * 90.00506 * 1 2 3 31 31 H 1.09010 * 109.47224 * 210.00064 * 1 2 3 32 32 H 1.09003 * 109.47329 * 330.00080 * 1 2 3 33 33 H 1.07999 * 119.61545 * 0.04002 * 3 2 1 34 34 H 1.08994 * 109.46949 * 209.99880 * 6 5 4 35 35 H 1.09004 * 109.46941 * 330.00221 * 6 5 4 36 36 H 0.97001 * 119.99950 * 359.97438 * 7 6 5 37 37 H 1.08992 * 109.59019 * 353.37082 * 13 12 10 38 38 H 1.08996 * 109.58399 * 113.65743 * 13 12 10 39 39 H 1.09000 * 109.49350 * 65.32087 * 14 13 12 40 40 H 1.09001 * 109.49744 * 185.41401 * 14 13 12 41 41 H 1.08995 * 109.46059 * 181.38456 * 15 14 13 42 42 H 1.09003 * 109.46126 * 301.36111 * 15 14 13 43 43 H 0.97001 * 120.00707 * 179.97438 * 21 20 18 44 44 H 1.09000 * 109.58801 * 246.20014 * 26 12 10 45 45 H 1.09002 * 109.58753 * 6.62758 * 26 12 10 46 46 H 1.09009 * 109.47358 * 89.99997 * 28 27 5 47 47 H 1.09002 * 109.47997 * 210.00011 * 28 27 5 48 48 H 1.09001 * 109.47483 * 330.00296 * 28 27 5 49 49 H 1.08007 * 120.78839 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1919 0.0000 4 7 3.5254 1.1999 -0.0005 5 6 4.2256 0.0823 -0.0005 6 6 5.7313 0.1467 -0.0017 7 7 6.2202 0.1682 1.3792 8 6 7.5442 0.2255 1.6244 9 8 8.3314 0.2588 0.7015 10 6 8.0430 0.2469 3.0330 11 8 7.2670 0.0970 3.9539 12 7 9.3548 0.4327 3.2807 13 6 10.2820 0.7681 2.1914 14 6 11.4409 -0.2337 2.2044 15 6 12.0822 -0.2479 3.5938 16 6 11.0478 -0.6925 4.6305 17 1 10.6753 -1.6834 4.3709 18 6 11.6889 -0.7372 5.9936 19 1 12.7189 -0.4365 6.1160 20 6 10.9604 -1.1621 7.0844 21 7 9.6771 -1.4199 6.9581 22 14 11.7965 -1.3715 8.7417 23 1 11.6145 -0.1374 9.5474 24 1 11.1933 -2.5239 9.4583 25 1 13.2462 -1.6198 8.5370 26 6 9.8836 0.3097 4.6460 27 6 3.5948 -1.1471 -0.0054 28 6 4.4026 -2.4193 -0.0111 29 6 2.2089 -1.1955 -0.0005 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3634 -0.8901 0.5139 32 1 -0.3634 0.8900 0.5138 33 1 1.6675 2.1276 0.0007 34 1 6.1319 -0.7271 -0.5154 35 1 6.0558 1.0512 -0.5162 36 1 5.5910 0.1420 2.1169 37 1 9.7600 0.7106 1.2364 38 1 10.6671 1.7773 2.3372 39 1 11.0641 -1.2287 1.9674 40 1 12.1843 0.0603 1.4635 41 1 12.9226 -0.9420 3.5988 42 1 12.4364 0.7530 3.8406 43 1 9.1646 -1.7192 7.7254 44 1 10.2388 1.2814 4.9892 45 1 9.0984 -0.0503 5.3109 46 1 4.5979 -2.7304 1.0152 47 1 3.8459 -3.2010 -0.5279 48 1 5.3484 -2.2468 -0.5247 49 1 1.6887 -2.1420 -0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001354945698.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:21 Heat of formation + Delta-G solvation = -28.997831 kcal Electronic energy + Delta-G solvation = -30144.785669 eV Core-core repulsion = 26071.992928 eV Total energy + Delta-G solvation = -4072.792742 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.98822 -40.32205 -38.25956 -36.83227 -35.65134 -33.96877 -33.63769 -33.09689 -31.69374 -29.71551 -29.21425 -27.80071 -26.34629 -25.20110 -24.87147 -23.18082 -22.27708 -21.76055 -21.10781 -20.22980 -18.84654 -17.50166 -17.35755 -16.67205 -16.45558 -15.96283 -15.63169 -15.35757 -14.83890 -14.77733 -14.55399 -14.37700 -14.10184 -13.73750 -13.63332 -13.47797 -13.32186 -13.22972 -12.96583 -12.83094 -12.76513 -12.72522 -12.57500 -12.44040 -12.04535 -11.74993 -11.57182 -11.37432 -10.99688 -10.66268 -10.46412 -10.26990 -10.04496 -9.91479 -9.85368 -9.76953 -9.26208 -9.22347 -9.09831 -9.04616 -8.54930 -8.37966 -7.79063 -6.01559 -4.09344 0.61875 0.91688 1.81192 2.69967 3.30268 3.37842 3.40945 3.43453 3.67149 3.86676 4.06016 4.25334 4.34979 4.42500 4.48293 4.58968 4.72191 4.80091 5.00718 5.12439 5.16479 5.21172 5.28816 5.31978 5.43648 5.47212 5.54556 5.66796 5.72471 5.78238 5.87715 5.88343 5.89788 6.07838 6.28213 6.34705 6.41911 6.62189 6.64500 6.77629 6.89055 7.01312 7.07583 7.20521 7.25081 7.60514 7.64120 7.83525 7.96576 8.00534 8.19176 8.36881 8.60398 8.94945 9.56157 11.03724 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016204 B = 0.002352 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.583802 B =11902.400287 C =12886.974167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.127 4.127 3 C 0.092 3.908 4 N -0.460 5.460 5 C 0.096 3.904 6 C 0.169 3.831 7 N -0.696 5.696 8 C 0.514 3.486 9 O -0.514 6.514 10 C 0.496 3.504 11 O -0.525 6.525 12 N -0.567 5.567 13 C 0.049 3.951 14 C -0.127 4.127 15 C -0.113 4.113 16 C 0.041 3.959 17 H 0.029 0.971 18 C -0.519 4.519 19 H 0.059 0.941 20 C 0.062 3.938 21 N -0.882 5.882 22 Si 0.893 3.107 23 H -0.281 1.281 24 H -0.286 1.286 25 H -0.274 1.274 26 C 0.108 3.892 27 C -0.107 4.107 28 C -0.120 4.120 29 C -0.081 4.081 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.157 0.843 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.414 0.586 37 H 0.144 0.856 38 H 0.054 0.946 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.050 0.950 42 H 0.049 0.951 43 H 0.263 0.737 44 H 0.048 0.952 45 H 0.123 0.877 46 H 0.081 0.919 47 H 0.071 0.929 48 H 0.077 0.923 49 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.368 1.465 -17.408 23.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.129 4.129 3 C -0.066 4.066 4 N -0.167 5.167 5 C -0.042 4.042 6 C 0.045 3.955 7 N -0.350 5.350 8 C 0.297 3.703 9 O -0.391 6.391 10 C 0.276 3.724 11 O -0.402 6.402 12 N -0.298 5.298 13 C -0.072 4.072 14 C -0.165 4.165 15 C -0.151 4.151 16 C 0.022 3.978 17 H 0.048 0.952 18 C -0.558 4.558 19 H 0.078 0.922 20 C -0.141 4.141 21 N -0.519 5.519 22 Si 0.721 3.279 23 H -0.207 1.207 24 H -0.212 1.212 25 H -0.198 1.198 26 C -0.011 4.011 27 C -0.110 4.110 28 C -0.177 4.177 29 C -0.107 4.107 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.174 0.826 34 H 0.110 0.890 35 H 0.108 0.892 36 H 0.250 0.750 37 H 0.160 0.840 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.073 0.927 44 H 0.066 0.934 45 H 0.141 0.859 46 H 0.100 0.900 47 H 0.090 0.910 48 H 0.095 0.905 49 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -15.897 2.156 -17.457 23.709 hybrid contribution -0.347 -0.872 1.343 1.639 sum -16.244 1.284 -16.114 22.917 Atomic orbital electron populations 1.20748 0.90010 1.03397 1.02694 1.21009 0.97731 0.94153 1.00006 1.22657 0.89480 0.97641 0.96868 1.67470 1.08390 1.30617 1.10247 1.20929 0.95740 0.88321 0.99169 1.20182 0.87152 1.04259 0.83891 1.45741 1.07111 1.73375 1.08749 1.20795 0.82451 0.76277 0.90752 1.90304 1.52966 1.49277 1.46564 1.19709 0.84098 0.80496 0.88052 1.90760 1.54818 1.49506 1.45108 1.48462 1.05505 1.64177 1.11700 1.23082 0.92460 0.97550 0.94128 1.21850 0.96946 0.99293 0.98415 1.21670 0.99049 1.00438 0.93954 1.19062 0.90716 0.94456 0.93548 0.95248 1.21101 0.97903 1.44738 0.92009 0.92240 1.25061 0.94804 0.95053 0.99132 1.69875 1.06102 1.45099 1.30868 0.86562 0.79695 0.77763 0.83891 1.20726 1.21158 1.19850 1.22634 1.00478 0.99271 0.78758 1.20792 0.94623 0.96471 0.99090 1.20916 0.99760 0.93503 1.03561 1.21410 0.93152 0.98427 0.97722 0.90739 0.91165 0.90943 0.82588 0.89026 0.89220 0.75019 0.83986 0.92727 0.92349 0.92291 0.93085 0.93267 0.92667 0.93383 0.85872 0.90033 0.91020 0.90459 0.84582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.52 10.04 36.00 0.36 -0.16 16 2 C -0.13 -0.97 5.90 -104.48 -0.62 -1.58 16 3 C 0.09 0.83 10.86 -17.55 -0.19 0.64 16 4 N -0.46 -5.28 10.27 -9.47 -0.10 -5.38 16 5 C 0.10 1.04 6.15 -82.59 -0.51 0.54 16 6 C 0.17 1.92 5.56 -5.19 -0.03 1.89 16 7 N -0.70 -9.59 5.54 -61.91 -0.34 -9.94 16 8 C 0.51 8.64 7.78 -11.59 -0.09 8.55 16 9 O -0.51 -8.79 13.10 5.50 0.07 -8.71 16 10 C 0.50 10.20 7.74 -11.58 -0.09 10.12 16 11 O -0.52 -12.18 15.94 5.50 0.09 -12.09 16 12 N -0.57 -12.04 2.97 -173.01 -0.51 -12.55 16 13 C 0.05 0.90 6.27 -3.71 -0.02 0.87 16 14 C -0.13 -2.28 6.08 -26.61 -0.16 -2.45 16 15 C -0.11 -2.36 5.10 -26.69 -0.14 -2.50 16 16 C 0.04 1.04 2.27 -91.42 -0.21 0.83 16 17 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 18 C -0.52 -14.13 8.52 -34.44 -0.29 -14.42 16 19 H 0.06 1.59 7.75 -52.49 -0.41 1.18 16 20 C 0.06 1.72 5.36 -17.82 -0.10 1.63 16 21 N -0.88 -25.51 11.39 55.43 0.63 -24.88 16 22 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 26 C 0.11 2.67 5.43 -3.49 -0.02 2.65 16 27 C -0.11 -0.99 5.90 -104.49 -0.62 -1.60 16 28 C -0.12 -0.93 9.62 36.00 0.35 -0.59 16 29 C -0.08 -0.64 9.55 -39.28 -0.37 -1.02 16 30 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.07 0.29 8.10 -51.92 -0.42 -0.13 16 32 H 0.07 0.29 8.09 -51.93 -0.42 -0.14 16 33 H 0.16 1.04 8.06 -52.49 -0.42 0.61 16 34 H 0.09 0.93 5.93 -51.93 -0.31 0.63 16 35 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.41 5.76 7.95 -40.82 -0.32 5.44 16 37 H 0.14 2.50 3.78 -56.77 -0.21 2.28 16 38 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 42 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 44 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 45 H 0.12 3.47 5.19 -51.93 -0.27 3.20 16 46 H 0.08 0.68 8.14 -51.92 -0.42 0.26 16 47 H 0.07 0.43 8.10 -51.93 -0.42 0.01 16 48 H 0.08 0.60 5.95 -51.93 -0.31 0.29 16 49 H 0.14 0.76 8.06 -52.48 -0.42 0.34 16 LS Contribution 394.88 15.07 5.95 5.95 Total: -1.00 -31.92 394.88 -9.28 -41.19 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -7.30 Total: 6.79 kcal Atomic # 6 Polarization: 6.13 SS G_CDS: -2.74 Total: 3.39 kcal Atomic # 7 Polarization: -52.42 SS G_CDS: -0.32 Total: -52.74 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: 0.16 Total: -20.81 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.92 -9.28 -41.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354945698.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.196 kcal (2) G-P(sol) polarization free energy of solvation -31.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds