Wall clock time and date at job start Wed Apr 1 2020 03:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38223 * 120.42065 * 2 1 4 4 N 1.31852 * 120.76447 * 180.02562 * 3 2 1 5 5 C 1.31887 * 121.72685 * 359.97438 * 4 3 2 6 6 C 1.50704 * 119.61941 * 179.97438 * 5 4 3 7 7 N 1.46504 * 109.46924 * 89.99986 * 6 5 4 8 8 C 1.34773 * 119.99807 * 180.02562 * 7 6 5 9 9 O 1.21352 * 120.00257 * 359.97438 * 8 7 6 10 10 C 1.49450 * 120.00116 * 180.02562 * 8 7 6 11 11 O 1.21351 * 120.00092 * 6.33885 * 10 8 7 12 12 N 1.34783 * 120.00161 * 186.34094 * 10 8 7 13 13 C 1.46927 * 120.62661 * 7.03563 * 12 10 8 14 14 C 1.53194 * 108.77159 * 233.58267 * 13 12 10 15 15 C 1.53037 * 109.31608 * 305.36623 * 14 13 12 16 16 C 1.53047 * 109.53614 * 61.36830 * 15 14 13 17 17 H 1.08998 * 109.49647 * 58.61492 * 16 15 14 18 18 C 1.50694 * 109.49793 * 178.68608 * 16 15 14 19 19 H 1.07998 * 119.99957 * 2.47888 * 18 16 15 20 20 C 1.37877 * 120.00069 * 182.48063 * 18 16 15 21 21 N 1.31510 * 120.00247 * 354.23927 * 20 18 16 22 22 Si 1.86801 * 120.00165 * 174.23489 * 20 18 16 23 23 H 1.48499 * 109.47163 * 95.00536 * 22 20 18 24 24 H 1.48500 * 109.47424 * 215.00477 * 22 20 18 25 25 H 1.48503 * 109.47149 * 335.00458 * 22 20 18 26 26 C 1.46922 * 120.62900 * 186.75504 * 12 10 8 27 27 C 1.38177 * 120.76377 * 0.25804 * 5 4 3 28 28 C 1.50698 * 120.42061 * 179.74518 * 27 5 4 29 29 C 1.38633 * 120.42027 * 180.02562 * 2 1 3 30 30 H 1.09001 * 109.46954 * 90.00506 * 1 2 3 31 31 H 1.09010 * 109.47224 * 210.00064 * 1 2 3 32 32 H 1.09003 * 109.47329 * 330.00080 * 1 2 3 33 33 H 1.07999 * 119.61545 * 0.04002 * 3 2 1 34 34 H 1.08994 * 109.46949 * 209.99880 * 6 5 4 35 35 H 1.09004 * 109.46941 * 330.00221 * 6 5 4 36 36 H 0.97001 * 119.99950 * 359.97438 * 7 6 5 37 37 H 1.08992 * 109.59019 * 353.37082 * 13 12 10 38 38 H 1.08996 * 109.58399 * 113.65743 * 13 12 10 39 39 H 1.09000 * 109.49350 * 65.32087 * 14 13 12 40 40 H 1.09001 * 109.49744 * 185.41401 * 14 13 12 41 41 H 1.08995 * 109.46059 * 181.38456 * 15 14 13 42 42 H 1.09003 * 109.46126 * 301.36111 * 15 14 13 43 43 H 0.97001 * 120.00707 * 179.97438 * 21 20 18 44 44 H 1.09000 * 109.58801 * 246.20014 * 26 12 10 45 45 H 1.09002 * 109.58753 * 6.62758 * 26 12 10 46 46 H 1.09009 * 109.47358 * 89.99997 * 28 27 5 47 47 H 1.09002 * 109.47997 * 210.00011 * 28 27 5 48 48 H 1.09001 * 109.47483 * 330.00296 * 28 27 5 49 49 H 1.08007 * 120.78839 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1919 0.0000 4 7 3.5254 1.1999 -0.0005 5 6 4.2256 0.0823 -0.0005 6 6 5.7313 0.1467 -0.0017 7 7 6.2202 0.1682 1.3792 8 6 7.5442 0.2255 1.6244 9 8 8.3314 0.2588 0.7015 10 6 8.0430 0.2469 3.0330 11 8 7.2670 0.0970 3.9539 12 7 9.3548 0.4327 3.2807 13 6 10.2820 0.7681 2.1914 14 6 11.4409 -0.2337 2.2044 15 6 12.0822 -0.2479 3.5938 16 6 11.0478 -0.6925 4.6305 17 1 10.6753 -1.6834 4.3709 18 6 11.6889 -0.7372 5.9936 19 1 12.7189 -0.4365 6.1160 20 6 10.9604 -1.1621 7.0844 21 7 9.6771 -1.4199 6.9581 22 14 11.7965 -1.3715 8.7417 23 1 11.6145 -0.1374 9.5474 24 1 11.1933 -2.5239 9.4583 25 1 13.2462 -1.6198 8.5370 26 6 9.8836 0.3097 4.6460 27 6 3.5948 -1.1471 -0.0054 28 6 4.4026 -2.4193 -0.0111 29 6 2.2089 -1.1955 -0.0005 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3634 -0.8901 0.5139 32 1 -0.3634 0.8900 0.5138 33 1 1.6675 2.1276 0.0007 34 1 6.1319 -0.7271 -0.5154 35 1 6.0558 1.0512 -0.5162 36 1 5.5910 0.1420 2.1169 37 1 9.7600 0.7106 1.2364 38 1 10.6671 1.7773 2.3372 39 1 11.0641 -1.2287 1.9674 40 1 12.1843 0.0603 1.4635 41 1 12.9226 -0.9420 3.5988 42 1 12.4364 0.7530 3.8406 43 1 9.1646 -1.7192 7.7254 44 1 10.2388 1.2814 4.9892 45 1 9.0984 -0.0503 5.3109 46 1 4.5979 -2.7304 1.0152 47 1 3.8459 -3.2010 -0.5279 48 1 5.3484 -2.2468 -0.5247 49 1 1.6887 -2.1420 -0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001354945698.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:20 Heat of formation + Delta-G solvation = -49.625393 kcal Electronic energy + Delta-G solvation = -30145.680148 eV Core-core repulsion = 26071.992928 eV Total energy + Delta-G solvation = -4073.687220 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.06790 -41.44026 -39.77138 -38.53367 -36.70493 -35.22025 -34.63690 -34.29365 -33.43696 -31.56033 -30.06470 -28.39350 -27.71268 -26.90141 -26.14422 -24.18111 -23.54395 -23.40044 -21.82538 -21.69020 -20.51240 -19.03039 -18.28953 -18.07729 -17.98513 -17.20477 -17.01343 -16.76744 -16.50113 -15.89789 -15.58101 -15.44404 -15.36949 -15.22341 -14.75551 -14.66392 -14.44927 -14.30915 -14.09442 -13.98942 -13.83563 -13.66654 -13.46809 -13.31746 -13.25559 -13.13851 -13.02413 -12.90397 -12.47163 -12.32145 -12.20125 -12.16318 -11.71311 -11.61240 -11.10903 -10.99449 -10.59664 -10.55305 -10.48536 -10.40135 -10.08238 -9.69547 -9.54850 -8.12409 -6.28573 -0.08323 0.26086 0.32330 1.35786 1.41674 1.43062 1.53662 2.12867 2.40539 2.48473 2.82354 3.12191 3.15588 3.29825 3.60093 3.78489 3.84357 4.01193 4.15659 4.20055 4.20741 4.35188 4.38861 4.47300 4.55862 4.58689 4.62838 4.70283 4.74929 4.78759 4.82382 4.83823 4.89671 5.06420 5.10788 5.14874 5.24023 5.24314 5.24668 5.27179 5.30060 5.38451 5.50927 5.56951 5.73144 5.83305 5.91562 5.94817 6.29276 6.42752 6.68635 6.82824 6.93797 6.96434 7.41124 8.91311 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016204 B = 0.002352 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.583802 B =11902.400287 C =12886.974167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.120 4.120 3 C 0.076 3.924 4 N -0.489 5.489 5 C 0.074 3.926 6 C 0.172 3.828 7 N -0.680 5.680 8 C 0.525 3.475 9 O -0.515 6.515 10 C 0.487 3.513 11 O -0.560 6.560 12 N -0.573 5.573 13 C 0.048 3.952 14 C -0.119 4.119 15 C -0.107 4.107 16 C 0.040 3.960 17 H -0.009 1.009 18 C -0.535 4.535 19 H 0.063 0.937 20 C 0.011 3.989 21 N -0.914 5.914 22 Si 0.959 3.041 23 H -0.276 1.276 24 H -0.285 1.285 25 H -0.264 1.264 26 C 0.121 3.879 27 C -0.111 4.111 28 C -0.120 4.120 29 C -0.087 4.087 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.175 0.825 34 H 0.106 0.894 35 H 0.086 0.914 36 H 0.413 0.587 37 H 0.156 0.844 38 H 0.070 0.930 39 H 0.048 0.952 40 H 0.098 0.902 41 H 0.054 0.946 42 H 0.056 0.944 43 H 0.261 0.739 44 H 0.043 0.957 45 H 0.085 0.915 46 H 0.072 0.928 47 H 0.092 0.908 48 H 0.075 0.925 49 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.879 1.481 -18.957 25.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.123 4.123 3 C -0.082 4.082 4 N -0.197 5.197 5 C -0.063 4.063 6 C 0.049 3.951 7 N -0.332 5.332 8 C 0.307 3.693 9 O -0.393 6.393 10 C 0.269 3.731 11 O -0.440 6.440 12 N -0.305 5.305 13 C -0.072 4.072 14 C -0.157 4.157 15 C -0.145 4.145 16 C 0.020 3.980 17 H 0.009 0.991 18 C -0.574 4.574 19 H 0.081 0.919 20 C -0.189 4.189 21 N -0.553 5.553 22 Si 0.785 3.215 23 H -0.202 1.202 24 H -0.211 1.211 25 H -0.188 1.188 26 C -0.001 4.001 27 C -0.114 4.114 28 C -0.176 4.176 29 C -0.112 4.112 30 H 0.106 0.894 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.192 0.808 34 H 0.124 0.876 35 H 0.105 0.895 36 H 0.249 0.751 37 H 0.172 0.828 38 H 0.088 0.912 39 H 0.067 0.933 40 H 0.117 0.883 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.070 0.930 44 H 0.061 0.939 45 H 0.103 0.897 46 H 0.091 0.909 47 H 0.111 0.889 48 H 0.094 0.906 49 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -16.406 2.179 -19.052 25.237 hybrid contribution -0.319 -0.872 1.785 2.012 sum -16.725 1.307 -17.268 24.075 Atomic orbital electron populations 1.20822 0.87699 1.04337 1.03784 1.21361 0.99358 0.93515 0.98018 1.23069 0.88966 0.99202 0.96983 1.67399 1.09742 1.31302 1.11241 1.20831 0.95189 0.89051 1.01272 1.20309 0.88138 1.04694 0.81939 1.45711 1.05802 1.71531 1.10134 1.19908 0.83505 0.77280 0.88621 1.90279 1.53203 1.50135 1.45696 1.20413 0.83645 0.79345 0.89686 1.90731 1.55666 1.50800 1.46765 1.48487 1.06486 1.64308 1.11185 1.23332 0.92105 0.98372 0.93393 1.21816 0.97541 0.98901 0.97473 1.21566 0.97923 1.00617 0.94353 1.18997 0.91950 0.92700 0.94303 0.99090 1.21485 0.98135 1.44514 0.93221 0.91909 1.25893 0.95273 0.94806 1.02914 1.70054 1.07522 1.46011 1.31691 0.85520 0.78984 0.77656 0.79367 1.20194 1.21096 1.18781 1.22104 0.99155 0.98474 0.80334 1.20970 0.95514 0.96247 0.98623 1.20936 0.99905 0.93548 1.03246 1.21776 0.92745 0.99720 0.97008 0.89399 0.90180 0.90097 0.80823 0.87638 0.89531 0.75088 0.82768 0.91176 0.93341 0.88333 0.92697 0.92535 0.92959 0.93881 0.89717 0.90903 0.88920 0.90624 0.82088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.73 10.04 71.24 0.72 -0.01 16 2 C -0.12 -1.61 5.90 -19.77 -0.12 -1.72 16 3 C 0.08 1.29 10.86 84.69 0.92 2.21 16 4 N -0.49 -11.04 10.27 -183.89 -1.89 -12.93 16 5 C 0.07 1.56 6.15 42.54 0.26 1.82 16 6 C 0.17 3.82 5.56 85.63 0.48 4.30 16 7 N -0.68 -18.77 5.54 -468.13 -2.59 -21.37 16 8 C 0.53 17.62 7.78 87.27 0.68 18.30 16 9 O -0.51 -17.05 13.10 -3.25 -0.04 -17.09 16 10 C 0.49 20.61 7.74 87.27 0.68 21.28 16 11 O -0.56 -27.27 15.94 -3.25 -0.05 -27.32 16 12 N -0.57 -24.80 2.97 -819.64 -2.43 -27.23 16 13 C 0.05 1.69 6.27 86.36 0.54 2.23 16 14 C -0.12 -4.09 6.08 30.67 0.19 -3.90 16 15 C -0.11 -4.38 5.10 30.62 0.16 -4.22 16 16 C 0.04 2.05 2.27 -11.31 -0.03 2.02 16 17 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 18 C -0.54 -29.68 8.52 25.60 0.22 -29.46 16 19 H 0.06 3.36 7.75 -2.91 -0.02 3.33 16 20 C 0.01 0.60 5.36 84.66 0.45 1.05 16 21 N -0.91 -54.94 11.39 21.45 0.24 -54.70 16 22 Si 0.96 44.19 29.54 68.60 2.03 46.22 16 23 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 24 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 25 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16 26 C 0.12 6.18 5.43 86.51 0.47 6.65 16 27 C -0.11 -1.92 5.90 -19.78 -0.12 -2.03 16 28 C -0.12 -1.71 9.62 71.24 0.69 -1.02 16 29 C -0.09 -1.20 9.55 22.47 0.21 -0.98 16 30 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.08 0.41 8.10 -2.38 -0.02 0.39 16 32 H 0.08 0.43 8.09 -2.39 -0.02 0.41 16 33 H 0.17 2.10 8.06 -2.91 -0.02 2.07 16 34 H 0.11 2.06 5.93 -2.39 -0.01 2.04 16 35 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.41 11.76 7.95 -92.71 -0.74 11.02 16 37 H 0.16 5.14 3.78 -78.95 -0.30 4.85 16 38 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 39 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 41 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 42 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 43 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 44 H 0.04 2.18 8.14 -2.39 -0.02 2.17 16 45 H 0.08 5.04 5.19 -2.39 -0.01 5.03 16 46 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 47 H 0.09 0.91 8.10 -2.39 -0.02 0.89 16 48 H 0.08 1.09 5.95 -2.39 -0.01 1.07 16 49 H 0.16 1.33 8.06 -2.91 -0.02 1.31 16 Total: -1.00 -71.66 394.88 1.61 -70.05 By element: Atomic # 1 Polarization: 27.90 SS G_CDS: -0.05 Total: 27.86 kcal Atomic # 6 Polarization: 10.13 SS G_CDS: 6.39 Total: 16.52 kcal Atomic # 7 Polarization: -109.56 SS G_CDS: -6.67 Total: -116.23 kcal Atomic # 8 Polarization: -44.32 SS G_CDS: -0.09 Total: -44.41 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -71.66 1.61 -70.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354945698.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.423 kcal (2) G-P(sol) polarization free energy of solvation -71.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds