Wall clock time and date at job start Wed Apr 1 2020 06:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 110.53622 * 2 1 4 4 O 1.21280 * 119.99764 * 118.84394 * 3 2 1 5 5 N 1.34775 * 120.00089 * 298.84321 * 3 2 1 6 6 C 1.46502 * 119.99680 * 180.02562 * 5 3 2 7 7 C 1.50700 * 109.46854 * 179.97438 * 6 5 3 8 8 C 1.38238 * 119.99969 * 269.72770 * 7 6 5 9 9 C 1.38235 * 119.99644 * 179.77030 * 8 7 6 10 10 C 1.38237 * 120.00016 * 0.49864 * 9 8 7 11 11 C 1.50703 * 119.99855 * 179.72427 * 10 9 8 12 12 C 1.52996 * 109.47707 * 270.02650 * 11 10 9 13 13 N 1.46497 * 109.47358 * 179.97438 * 12 11 10 14 14 C 1.36941 * 120.00034 * 180.02562 * 13 12 11 15 15 H 1.08005 * 119.99500 * 0.02562 * 14 13 12 16 16 C 1.38807 * 120.00205 * 180.02562 * 14 13 12 17 17 N 1.31621 * 119.99762 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00187 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46955 * 60.00194 * 18 16 14 20 20 H 1.48500 * 109.47065 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.46934 * 300.00024 * 18 16 14 22 22 C 1.38232 * 120.00034 * 359.75479 * 10 9 8 23 23 C 1.38233 * 119.99932 * 90.00076 * 7 6 5 24 24 C 1.54625 * 110.48837 * 122.61672 * 2 1 3 25 25 C 1.54474 * 101.76763 * 143.47516 * 24 2 1 26 26 N 1.46761 * 105.47258 * 334.58255 * 25 24 2 27 27 C 1.34417 * 111.30293 * 17.01799 * 26 25 24 28 28 O 1.21283 * 124.94747 * 179.63100 * 27 26 25 29 29 H 1.09006 * 109.46962 * 181.15611 * 1 2 3 30 30 H 1.09004 * 109.47188 * 301.15370 * 1 2 3 31 31 H 1.09002 * 109.47227 * 61.16009 * 1 2 3 32 32 H 0.97000 * 120.00112 * 359.97438 * 5 3 2 33 33 H 1.08998 * 109.47404 * 299.99642 * 6 5 3 34 34 H 1.08997 * 109.46963 * 60.00107 * 6 5 3 35 35 H 1.07990 * 120.00178 * 359.97438 * 8 7 6 36 36 H 1.08000 * 120.00177 * 180.23011 * 9 8 7 37 37 H 1.09009 * 109.47060 * 30.02848 * 11 10 9 38 38 H 1.09000 * 109.46845 * 150.02061 * 11 10 9 39 39 H 1.08999 * 109.47014 * 300.00226 * 12 11 10 40 40 H 1.09008 * 109.46848 * 59.99902 * 12 11 10 41 41 H 0.96999 * 120.00147 * 0.02562 * 13 12 11 42 42 H 0.97006 * 119.99880 * 179.97438 * 17 16 14 43 43 H 1.08002 * 119.99643 * 179.97438 * 22 10 9 44 44 H 1.07995 * 120.00090 * 359.97438 * 23 7 6 45 45 H 1.09001 * 110.96806 * 261.59642 * 24 2 1 46 46 H 1.09007 * 110.96934 * 25.35624 * 24 2 1 47 47 H 1.08998 * 110.24827 * 215.58069 * 25 24 2 48 48 H 1.09000 * 110.31659 * 93.61957 * 25 24 2 49 49 H 0.97006 * 124.35018 * 196.98768 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0587 1.4112 0.0000 4 8 2.7459 1.8013 0.9200 5 7 1.7678 2.2398 -1.0224 6 6 2.2822 3.6116 -1.0226 7 6 1.8170 4.3223 -2.2674 8 6 2.5884 4.2846 -3.4139 9 6 2.1593 4.9326 -4.5571 10 6 0.9639 5.6269 -4.5507 11 6 0.4992 6.3385 -5.7952 12 6 1.0368 7.7709 -5.7947 13 7 0.5855 8.4623 -7.0048 14 6 0.9462 9.7651 -7.2238 15 1 1.5638 10.2826 -6.5045 16 6 0.5182 10.4205 -8.3701 17 7 -0.2348 9.7899 -9.2463 18 14 1.0097 12.1978 -8.6685 19 1 2.4900 12.2985 -8.7293 20 1 0.4282 12.6632 -9.9532 21 1 0.5010 13.0448 -7.5599 22 6 0.1952 5.6689 -3.4026 23 6 0.6217 5.0166 -2.2610 24 6 2.0712 -0.7807 1.2200 25 6 3.3199 -1.4686 0.6252 26 7 3.0563 -1.5817 -0.8142 27 6 2.0595 -0.7638 -1.1938 28 8 1.6443 -0.6544 -2.3281 29 1 -0.3633 -1.0275 0.0207 30 1 -0.3634 0.5317 0.8795 31 1 -0.3634 0.4957 -0.9002 32 1 1.2185 1.9277 -1.7584 33 1 1.9122 4.1385 -0.1431 34 1 3.3718 3.5909 -1.0021 35 1 3.5245 3.7462 -3.4175 36 1 2.7601 4.9001 -5.4540 37 1 0.8696 5.8117 -6.6748 38 1 -0.5904 6.3593 -5.8164 39 1 0.6664 8.2976 -4.9152 40 1 2.1265 7.7499 -5.7736 41 1 0.0312 7.9974 -7.6509 42 1 -0.5342 10.2480 -10.0472 43 1 -0.7385 6.2117 -3.3976 44 1 0.0211 5.0494 -1.3641 45 1 2.3471 -0.1015 2.0267 46 1 1.3461 -1.5184 1.5640 47 1 3.4504 -2.4580 1.0636 48 1 4.2068 -0.8594 0.7995 49 1 3.5396 -2.1707 -1.4145 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480714125.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:43:44 Heat of formation + Delta-G solvation = -45.252694 kcal Electronic energy + Delta-G solvation = -28939.679308 eV Core-core repulsion = 24866.181703 eV Total energy + Delta-G solvation = -4073.497606 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.70191 -39.75406 -39.02856 -36.91315 -35.79804 -34.78112 -33.79634 -32.69362 -30.91516 -30.87713 -29.38709 -28.43757 -26.24801 -25.55311 -23.64338 -22.74366 -22.70887 -22.06769 -21.53681 -20.49737 -19.88736 -18.15692 -17.81337 -17.15979 -16.52325 -16.12138 -16.03358 -15.57518 -15.32757 -14.92269 -14.89051 -14.62358 -14.39505 -14.22469 -14.07426 -13.63147 -13.53158 -13.40715 -13.25988 -13.19235 -12.97817 -12.75191 -12.63830 -12.53294 -12.32343 -11.94053 -11.71812 -11.20317 -11.18058 -11.07435 -10.86045 -10.68590 -10.57188 -10.52269 -10.17830 -10.08633 -9.70117 -9.67722 -9.45146 -8.90817 -8.83681 -8.54151 -6.91281 -5.74964 -3.03966 1.20479 1.44145 1.82506 2.19142 2.73645 2.93363 3.45685 3.49586 3.50979 3.61291 3.79219 3.82389 4.12483 4.35698 4.44245 4.52440 4.61229 4.72258 4.76960 4.95377 4.99820 5.06350 5.09164 5.12469 5.13746 5.30608 5.40351 5.44622 5.52182 5.54651 5.54791 5.62870 5.79253 5.88293 5.93643 6.01053 6.11107 6.15923 6.22396 6.30302 6.39879 6.47773 6.51510 6.63921 6.83451 6.95651 7.02288 7.09187 7.64041 7.71144 7.74326 8.43925 9.54838 10.12375 10.47394 11.47862 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.028935 B = 0.001597 C = 0.001576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.459936 B =17526.547494 C =17765.705953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.120 4.120 3 C 0.534 3.466 4 O -0.532 6.532 5 N -0.714 5.714 6 C 0.165 3.835 7 C -0.129 4.129 8 C -0.096 4.096 9 C -0.118 4.118 10 C -0.050 4.050 11 C -0.095 4.095 12 C 0.161 3.839 13 N -0.734 5.734 14 C -0.240 4.240 15 H 0.070 0.930 16 C -0.014 4.014 17 N -0.934 5.934 18 Si 0.909 3.091 19 H -0.286 1.286 20 H -0.291 1.291 21 H -0.286 1.286 22 C -0.118 4.118 23 C -0.098 4.098 24 C -0.118 4.118 25 C 0.098 3.902 26 N -0.727 5.727 27 C 0.530 3.470 28 O -0.515 6.515 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.409 0.591 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.119 0.881 36 H 0.125 0.875 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.020 0.980 40 H 0.019 0.981 41 H 0.384 0.616 42 H 0.256 0.744 43 H 0.125 0.875 44 H 0.121 0.879 45 H 0.111 0.889 46 H 0.091 0.909 47 H 0.085 0.915 48 H 0.078 0.922 49 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.290 -27.113 24.124 36.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.127 4.127 3 C 0.319 3.681 4 O -0.409 6.409 5 N -0.366 5.366 6 C 0.043 3.957 7 C -0.130 4.130 8 C -0.115 4.115 9 C -0.136 4.136 10 C -0.051 4.051 11 C -0.132 4.132 12 C 0.034 3.966 13 N -0.378 5.378 14 C -0.372 4.372 15 H 0.088 0.912 16 C -0.210 4.210 17 N -0.583 5.583 18 Si 0.739 3.261 19 H -0.213 1.213 20 H -0.217 1.217 21 H -0.213 1.213 22 C -0.136 4.136 23 C -0.116 4.116 24 C -0.156 4.156 25 C -0.026 4.026 26 N -0.383 5.383 27 C 0.314 3.686 28 O -0.390 6.390 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.245 0.755 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.137 0.863 36 H 0.143 0.857 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.038 0.962 40 H 0.037 0.963 41 H 0.217 0.783 42 H 0.065 0.935 43 H 0.143 0.857 44 H 0.139 0.861 45 H 0.129 0.871 46 H 0.110 0.890 47 H 0.103 0.897 48 H 0.096 0.904 49 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 4.586 -26.505 24.271 36.231 hybrid contribution 0.124 0.434 -1.052 1.144 sum 4.710 -26.071 23.220 35.228 Atomic orbital electron populations 1.21696 0.89326 1.03848 1.03860 1.21643 0.99795 0.94026 0.97239 1.19688 0.80208 0.85929 0.82325 1.90705 1.38153 1.76520 1.35483 1.46150 1.53664 1.12847 1.23923 1.20209 0.99125 0.80558 0.95826 1.19666 0.96595 1.01697 0.95000 1.21000 0.99236 0.98826 0.92423 1.21119 0.96273 0.97758 0.98407 1.20085 0.94038 0.95311 0.95685 1.20877 1.01419 0.96773 0.94166 1.20583 0.96388 0.88902 0.90763 1.42365 1.62138 1.11736 1.21603 1.19198 1.25926 0.88385 1.03653 0.91224 1.24749 1.00545 0.98452 0.97281 1.69656 1.40020 1.36537 1.12063 0.86244 0.77961 0.84765 0.77085 1.21259 1.21653 1.21258 1.21114 1.00359 0.99689 0.92466 1.20992 0.95400 0.96995 0.98231 1.22726 0.96715 0.99350 0.96788 1.22159 0.98861 1.01853 0.79746 1.46158 1.37139 1.43864 1.11142 1.20328 0.79717 0.79759 0.88800 1.90804 1.60941 1.66140 1.21109 0.90832 0.90644 0.90805 0.75498 0.90388 0.90646 0.86282 0.85693 0.90767 0.90758 0.96248 0.96266 0.78267 0.93467 0.85665 0.86146 0.87102 0.88999 0.89656 0.90386 0.74646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.74 8.33 37.16 0.31 -0.43 16 2 C -0.12 -0.86 0.74 -155.67 -0.12 -0.97 16 3 C 0.53 5.10 6.55 -10.99 -0.07 5.03 16 4 O -0.53 -6.31 15.46 5.56 0.09 -6.23 16 5 N -0.71 -6.69 5.41 -61.47 -0.33 -7.02 16 6 C 0.17 1.60 5.80 -5.19 -0.03 1.57 16 7 C -0.13 -1.40 5.25 -104.62 -0.55 -1.95 16 8 C -0.10 -1.12 9.70 -39.58 -0.38 -1.51 16 9 C -0.12 -1.55 9.70 -39.58 -0.38 -1.94 16 10 C -0.05 -0.72 5.13 -104.62 -0.54 -1.26 16 11 C -0.09 -1.57 5.46 -27.88 -0.15 -1.72 16 12 C 0.16 3.34 6.24 -4.05 -0.03 3.32 16 13 N -0.73 -19.09 5.60 -59.91 -0.34 -19.43 16 14 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 15 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 16 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 17 N -0.93 -28.61 13.06 55.49 0.72 -27.89 16 18 Si 0.91 22.72 29.55 -169.99 -5.02 17.69 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 C -0.12 -1.52 9.70 -39.59 -0.38 -1.90 16 23 C -0.10 -1.08 9.70 -39.58 -0.38 -1.47 16 24 C -0.12 -0.55 6.05 -25.10 -0.15 -0.70 16 25 C 0.10 0.39 7.78 -3.13 -0.02 0.37 16 26 N -0.73 -4.29 6.24 -59.21 -0.37 -4.66 16 27 C 0.53 4.63 7.08 -10.86 -0.08 4.55 16 28 O -0.52 -6.26 17.69 5.56 0.10 -6.16 16 29 H 0.07 0.34 8.13 -51.93 -0.42 -0.08 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.48 7.77 -51.93 -0.40 0.08 16 32 H 0.41 3.83 7.85 -40.82 -0.32 3.51 16 33 H 0.08 0.74 8.09 -51.93 -0.42 0.32 16 34 H 0.08 0.75 8.08 -51.93 -0.42 0.33 16 35 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 36 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 37 H 0.07 1.22 8.09 -51.92 -0.42 0.80 16 38 H 0.07 1.21 8.09 -51.93 -0.42 0.79 16 39 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.02 0.41 8.14 -51.92 -0.42 -0.01 16 41 H 0.38 10.38 7.67 -40.82 -0.31 10.06 16 42 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 43 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 44 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 45 H 0.11 0.61 6.91 -51.93 -0.36 0.25 16 46 H 0.09 0.25 7.90 -51.93 -0.41 -0.16 16 47 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 48 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.41 1.84 8.96 -40.82 -0.37 1.47 16 LS Contribution 409.66 15.07 6.17 6.17 Total: -1.00 -35.06 409.66 -9.81 -44.87 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -7.62 Total: 9.23 kcal Atomic # 6 Polarization: -3.38 SS G_CDS: -3.21 Total: -6.59 kcal Atomic # 7 Polarization: -58.69 SS G_CDS: -0.31 Total: -59.00 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: 0.18 Total: -12.38 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -35.06 -9.81 -44.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480714125.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.384 kcal (2) G-P(sol) polarization free energy of solvation -35.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds