Wall clock time and date at job start Wed Apr 1 2020 06:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 110.53622 * 2 1 4 4 O 1.21280 * 119.99764 * 118.84394 * 3 2 1 5 5 N 1.34775 * 120.00089 * 298.84321 * 3 2 1 6 6 C 1.46502 * 119.99680 * 180.02562 * 5 3 2 7 7 C 1.50700 * 109.46854 * 179.97438 * 6 5 3 8 8 C 1.38238 * 119.99969 * 269.72770 * 7 6 5 9 9 C 1.38235 * 119.99644 * 179.77030 * 8 7 6 10 10 C 1.38237 * 120.00016 * 0.49864 * 9 8 7 11 11 C 1.50703 * 119.99855 * 179.72427 * 10 9 8 12 12 C 1.52996 * 109.47707 * 270.02650 * 11 10 9 13 13 N 1.46497 * 109.47358 * 179.97438 * 12 11 10 14 14 C 1.36941 * 120.00034 * 180.02562 * 13 12 11 15 15 H 1.08005 * 119.99500 * 0.02562 * 14 13 12 16 16 C 1.38807 * 120.00205 * 180.02562 * 14 13 12 17 17 N 1.31621 * 119.99762 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00187 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46955 * 60.00194 * 18 16 14 20 20 H 1.48500 * 109.47065 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.46934 * 300.00024 * 18 16 14 22 22 C 1.38232 * 120.00034 * 359.75479 * 10 9 8 23 23 C 1.38233 * 119.99932 * 90.00076 * 7 6 5 24 24 C 1.54625 * 110.48837 * 122.61672 * 2 1 3 25 25 C 1.54474 * 101.76763 * 143.47516 * 24 2 1 26 26 N 1.46761 * 105.47258 * 334.58255 * 25 24 2 27 27 C 1.34417 * 111.30293 * 17.01799 * 26 25 24 28 28 O 1.21283 * 124.94747 * 179.63100 * 27 26 25 29 29 H 1.09006 * 109.46962 * 181.15611 * 1 2 3 30 30 H 1.09004 * 109.47188 * 301.15370 * 1 2 3 31 31 H 1.09002 * 109.47227 * 61.16009 * 1 2 3 32 32 H 0.97000 * 120.00112 * 359.97438 * 5 3 2 33 33 H 1.08998 * 109.47404 * 299.99642 * 6 5 3 34 34 H 1.08997 * 109.46963 * 60.00107 * 6 5 3 35 35 H 1.07990 * 120.00178 * 359.97438 * 8 7 6 36 36 H 1.08000 * 120.00177 * 180.23011 * 9 8 7 37 37 H 1.09009 * 109.47060 * 30.02848 * 11 10 9 38 38 H 1.09000 * 109.46845 * 150.02061 * 11 10 9 39 39 H 1.08999 * 109.47014 * 300.00226 * 12 11 10 40 40 H 1.09008 * 109.46848 * 59.99902 * 12 11 10 41 41 H 0.96999 * 120.00147 * 0.02562 * 13 12 11 42 42 H 0.97006 * 119.99880 * 179.97438 * 17 16 14 43 43 H 1.08002 * 119.99643 * 179.97438 * 22 10 9 44 44 H 1.07995 * 120.00090 * 359.97438 * 23 7 6 45 45 H 1.09001 * 110.96806 * 261.59642 * 24 2 1 46 46 H 1.09007 * 110.96934 * 25.35624 * 24 2 1 47 47 H 1.08998 * 110.24827 * 215.58069 * 25 24 2 48 48 H 1.09000 * 110.31659 * 93.61957 * 25 24 2 49 49 H 0.97006 * 124.35018 * 196.98768 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0587 1.4112 0.0000 4 8 2.7459 1.8013 0.9200 5 7 1.7678 2.2398 -1.0224 6 6 2.2822 3.6116 -1.0226 7 6 1.8170 4.3223 -2.2674 8 6 2.5884 4.2846 -3.4139 9 6 2.1593 4.9326 -4.5571 10 6 0.9639 5.6269 -4.5507 11 6 0.4992 6.3385 -5.7952 12 6 1.0368 7.7709 -5.7947 13 7 0.5855 8.4623 -7.0048 14 6 0.9462 9.7651 -7.2238 15 1 1.5638 10.2826 -6.5045 16 6 0.5182 10.4205 -8.3701 17 7 -0.2348 9.7899 -9.2463 18 14 1.0097 12.1978 -8.6685 19 1 2.4900 12.2985 -8.7293 20 1 0.4282 12.6632 -9.9532 21 1 0.5010 13.0448 -7.5599 22 6 0.1952 5.6689 -3.4026 23 6 0.6217 5.0166 -2.2610 24 6 2.0712 -0.7807 1.2200 25 6 3.3199 -1.4686 0.6252 26 7 3.0563 -1.5817 -0.8142 27 6 2.0595 -0.7638 -1.1938 28 8 1.6443 -0.6544 -2.3281 29 1 -0.3633 -1.0275 0.0207 30 1 -0.3634 0.5317 0.8795 31 1 -0.3634 0.4957 -0.9002 32 1 1.2185 1.9277 -1.7584 33 1 1.9122 4.1385 -0.1431 34 1 3.3718 3.5909 -1.0021 35 1 3.5245 3.7462 -3.4175 36 1 2.7601 4.9001 -5.4540 37 1 0.8696 5.8117 -6.6748 38 1 -0.5904 6.3593 -5.8164 39 1 0.6664 8.2976 -4.9152 40 1 2.1265 7.7499 -5.7736 41 1 0.0312 7.9974 -7.6509 42 1 -0.5342 10.2480 -10.0472 43 1 -0.7385 6.2117 -3.3976 44 1 0.0211 5.0494 -1.3641 45 1 2.3471 -0.1015 2.0267 46 1 1.3461 -1.5184 1.5640 47 1 3.4504 -2.4580 1.0636 48 1 4.2068 -0.8594 0.7995 49 1 3.5396 -2.1707 -1.4145 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480714125.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:43:41 Heat of formation + Delta-G solvation = -70.092507 kcal Electronic energy + Delta-G solvation = -28940.756444 eV Core-core repulsion = 24866.181703 eV Total energy + Delta-G solvation = -4074.574741 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -42.31072 -40.66062 -39.84601 -37.58127 -37.15821 -36.05058 -34.55472 -34.02995 -32.49765 -31.87814 -30.13899 -29.51995 -27.22591 -26.40016 -25.25792 -23.67736 -23.55493 -22.97807 -22.61871 -21.61444 -20.58209 -19.23339 -18.76233 -18.37566 -17.36458 -16.93684 -16.91754 -16.69489 -16.38629 -16.16043 -15.71663 -15.61378 -15.41269 -15.10635 -15.10357 -14.88653 -14.75223 -14.70211 -14.31531 -13.82876 -13.75047 -13.53605 -13.49207 -13.38003 -13.22014 -12.96811 -12.85220 -12.55052 -12.38248 -12.32875 -12.19266 -12.14844 -12.03554 -11.83540 -11.70708 -11.23415 -10.95482 -10.88267 -10.23494 -10.16821 -9.85271 -9.58668 -9.04258 -7.97347 -5.27507 0.22280 0.47446 1.14444 1.46294 1.49821 1.49894 1.56213 2.11287 2.34874 2.54531 2.85103 3.12576 3.34735 3.35795 3.54482 3.63170 3.79222 3.84034 3.88965 4.06562 4.10427 4.15243 4.35882 4.37734 4.43354 4.46105 4.53073 4.61533 4.66069 4.70957 4.72467 4.74805 4.75542 5.00211 5.03559 5.07703 5.08030 5.13173 5.22668 5.24390 5.26431 5.42883 5.47432 5.57760 5.68690 5.75155 5.88991 6.03736 6.24591 6.33548 6.98633 7.09548 7.30684 8.04896 8.29656 9.25800 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.028935 B = 0.001597 C = 0.001576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.459936 B =17526.547494 C =17765.705953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.119 4.119 3 C 0.533 3.467 4 O -0.557 6.557 5 N -0.713 5.713 6 C 0.169 3.831 7 C -0.119 4.119 8 C -0.099 4.099 9 C -0.127 4.127 10 C -0.070 4.070 11 C -0.079 4.079 12 C 0.163 3.837 13 N -0.747 5.747 14 C -0.253 4.253 15 H 0.074 0.926 16 C -0.074 4.074 17 N -0.968 5.968 18 Si 0.977 3.023 19 H -0.277 1.277 20 H -0.292 1.292 21 H -0.277 1.277 22 C -0.125 4.125 23 C -0.094 4.094 24 C -0.114 4.114 25 C 0.096 3.904 26 N -0.718 5.718 27 C 0.522 3.478 28 O -0.558 6.558 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.061 0.939 32 H 0.410 0.590 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.134 0.866 36 H 0.125 0.875 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.019 0.981 40 H 0.016 0.984 41 H 0.375 0.625 42 H 0.253 0.747 43 H 0.131 0.869 44 H 0.145 0.855 45 H 0.104 0.896 46 H 0.117 0.883 47 H 0.118 0.882 48 H 0.073 0.927 49 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.787 -28.186 26.437 38.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.125 4.125 3 C 0.318 3.682 4 O -0.435 6.435 5 N -0.364 5.364 6 C 0.047 3.953 7 C -0.119 4.119 8 C -0.118 4.118 9 C -0.145 4.145 10 C -0.071 4.071 11 C -0.117 4.117 12 C 0.036 3.964 13 N -0.390 5.390 14 C -0.384 4.384 15 H 0.092 0.908 16 C -0.267 4.267 17 N -0.619 5.619 18 Si 0.805 3.195 19 H -0.204 1.204 20 H -0.218 1.218 21 H -0.203 1.203 22 C -0.143 4.143 23 C -0.112 4.112 24 C -0.152 4.152 25 C -0.028 4.028 26 N -0.373 5.373 27 C 0.307 3.693 28 O -0.436 6.436 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.080 0.920 32 H 0.246 0.754 33 H 0.103 0.897 34 H 0.092 0.908 35 H 0.152 0.848 36 H 0.143 0.857 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.037 0.963 40 H 0.034 0.966 41 H 0.207 0.793 42 H 0.061 0.939 43 H 0.149 0.851 44 H 0.162 0.838 45 H 0.123 0.877 46 H 0.136 0.864 47 H 0.136 0.864 48 H 0.091 0.909 49 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 5.120 -27.610 26.639 38.707 hybrid contribution 0.031 0.678 -1.661 1.794 sum 5.151 -26.932 24.979 37.092 Atomic orbital electron populations 1.21731 0.88301 1.04806 1.03804 1.21691 1.00632 0.92438 0.97764 1.20089 0.79630 0.86763 0.81706 1.90693 1.39269 1.77239 1.36330 1.46152 1.53506 1.12732 1.23992 1.20157 0.99054 0.80798 0.95331 1.19810 0.96180 1.00872 0.95079 1.21180 0.99913 0.98537 0.92122 1.21201 0.96068 0.98079 0.99152 1.19913 0.95185 0.96754 0.95226 1.20640 1.01141 0.94353 0.95570 1.20684 0.96095 0.91000 0.88583 1.42582 1.62083 1.11388 1.22979 1.19610 1.25486 0.89623 1.03726 0.90799 1.25619 1.01008 1.02819 0.97234 1.69816 1.41414 1.38172 1.12468 0.85163 0.77839 0.79633 0.76829 1.20352 1.21842 1.20277 1.21243 1.00499 0.99982 0.92535 1.21225 0.95529 0.96009 0.98443 1.22804 0.97444 0.99463 0.95450 1.22352 0.98327 1.03607 0.78478 1.46237 1.35977 1.42836 1.12246 1.20630 0.80071 0.80074 0.88558 1.90777 1.62475 1.67643 1.22730 0.89461 0.89532 0.91954 0.75423 0.89727 0.90796 0.84848 0.85660 0.91141 0.90832 0.96316 0.96569 0.79318 0.93863 0.85145 0.83761 0.87713 0.86431 0.86359 0.90894 0.73906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.27 8.33 71.98 0.60 -0.67 16 2 C -0.12 -1.51 0.74 -52.93 -0.04 -1.55 16 3 C 0.53 9.55 6.55 87.66 0.57 10.12 16 4 O -0.56 -12.57 15.46 -3.03 -0.05 -12.62 16 5 N -0.71 -12.58 5.41 -466.79 -2.53 -15.11 16 6 C 0.17 3.03 5.80 85.63 0.50 3.53 16 7 C -0.12 -2.41 5.25 -19.87 -0.10 -2.51 16 8 C -0.10 -2.21 9.70 22.27 0.22 -1.99 16 9 C -0.13 -3.32 9.70 22.27 0.22 -3.10 16 10 C -0.07 -1.99 5.13 -19.86 -0.10 -2.09 16 11 C -0.08 -2.67 5.46 29.85 0.16 -2.51 16 12 C 0.16 6.84 6.24 86.38 0.54 7.38 16 13 N -0.75 -39.58 5.60 -343.45 -1.92 -41.51 16 14 C -0.25 -14.62 9.99 84.03 0.84 -13.78 16 15 H 0.07 4.11 7.83 -2.91 -0.02 4.09 16 16 C -0.07 -4.37 5.50 84.86 0.47 -3.90 16 17 N -0.97 -60.21 13.06 21.65 0.28 -59.92 16 18 Si 0.98 46.83 29.55 68.60 2.03 48.85 16 19 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 20 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 21 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 22 C -0.12 -3.09 9.70 22.27 0.22 -2.88 16 23 C -0.09 -1.92 9.70 22.27 0.22 -1.71 16 24 C -0.11 -0.79 6.05 31.65 0.19 -0.60 16 25 C 0.10 0.53 7.78 86.83 0.68 1.20 16 26 N -0.72 -7.30 6.24 -459.82 -2.87 -10.17 16 27 C 0.52 8.60 7.08 87.90 0.62 9.22 16 28 O -0.56 -13.49 17.69 -3.04 -0.05 -13.54 16 29 H 0.09 0.62 8.13 -2.38 -0.02 0.60 16 30 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.06 0.76 7.77 -2.39 -0.02 0.75 16 32 H 0.41 7.36 7.85 -92.71 -0.73 6.63 16 33 H 0.08 1.44 8.09 -2.39 -0.02 1.42 16 34 H 0.07 1.37 8.08 -2.39 -0.02 1.35 16 35 H 0.13 2.55 8.06 -2.92 -0.02 2.52 16 36 H 0.13 3.17 8.06 -2.91 -0.02 3.15 16 37 H 0.07 2.38 8.09 -2.38 -0.02 2.37 16 38 H 0.07 2.45 8.09 -2.39 -0.02 2.43 16 39 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.02 0.70 8.14 -2.38 -0.02 0.68 16 41 H 0.37 20.83 7.67 -92.71 -0.71 20.12 16 42 H 0.25 15.17 8.31 -92.70 -0.77 14.40 16 43 H 0.13 3.04 8.06 -2.91 -0.02 3.01 16 44 H 0.14 2.25 8.06 -2.91 -0.02 2.23 16 45 H 0.10 0.93 6.91 -2.39 -0.02 0.91 16 46 H 0.12 0.22 7.90 -2.38 -0.02 0.20 16 47 H 0.12 -0.07 8.14 -2.39 -0.02 -0.09 16 48 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 49 H 0.42 3.13 8.96 -92.70 -0.83 2.29 16 Total: -1.00 -75.69 409.66 -0.61 -76.30 By element: Atomic # 1 Polarization: 34.83 SS G_CDS: -1.28 Total: 33.55 kcal Atomic # 6 Polarization: -11.62 SS G_CDS: 5.79 Total: -5.84 kcal Atomic # 7 Polarization: -119.67 SS G_CDS: -7.04 Total: -126.70 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: -0.10 Total: -26.16 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 2.03 Total: 48.85 kcal Total: -75.69 -0.61 -76.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480714125.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.204 kcal (2) G-P(sol) polarization free energy of solvation -75.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds