Wall clock time and date at job start Wed Apr 1 2020 03:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.49603 * 2 1 4 4 N 1.46496 * 109.46791 * 300.06060 * 3 2 1 5 5 C 1.34776 * 119.99960 * 180.02562 * 4 3 2 6 6 O 1.21530 * 120.00153 * 0.02562 * 5 4 3 7 7 C 1.48035 * 120.00373 * 179.97438 * 5 4 3 8 8 C 1.39555 * 120.00053 * 179.97438 * 7 5 4 9 9 C 1.37817 * 119.99573 * 180.02562 * 8 7 5 10 10 C 1.39563 * 120.00402 * 0.02562 * 9 8 7 11 11 C 1.48032 * 119.99782 * 179.97438 * 10 9 8 12 12 N 1.34780 * 119.99510 * 180.27794 * 11 10 9 13 13 O 1.21524 * 120.00256 * 0.02562 * 11 10 9 14 14 C 1.39555 * 119.99645 * 0.23332 * 10 9 8 15 15 C 1.37816 * 119.99824 * 359.49072 * 14 10 9 16 16 C 1.53040 * 109.49624 * 120.05965 * 2 1 3 17 17 C 1.53042 * 109.53743 * 58.62096 * 16 2 1 18 18 C 1.53191 * 109.31376 * 61.36624 * 17 16 2 19 19 N 1.46929 * 108.77285 * 305.36674 * 18 17 16 20 20 C 1.36939 * 120.62835 * 233.60790 * 19 18 17 21 21 H 1.07998 * 120.00427 * 27.68193 * 20 19 18 22 22 C 1.38814 * 119.99832 * 207.68672 * 20 19 18 23 23 N 1.31619 * 120.00424 * 17.35645 * 22 20 19 24 24 Si 1.86799 * 119.99619 * 197.35896 * 22 20 19 25 25 H 1.48501 * 109.47368 * 90.00239 * 24 22 20 26 26 H 1.48505 * 109.46851 * 209.99831 * 24 22 20 27 27 H 1.48496 * 109.47297 * 329.99646 * 24 22 20 28 28 C 1.46921 * 118.74146 * 53.60667 * 19 18 17 29 29 H 1.09000 * 109.46920 * 60.00502 * 1 2 3 30 30 H 1.09000 * 109.47132 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47773 * 300.00231 * 1 2 3 32 32 H 1.09000 * 109.46859 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47235 * 60.06027 * 3 2 1 34 34 H 0.96997 * 120.00363 * 359.97438 * 4 3 2 35 35 H 1.07992 * 120.00297 * 0.02562 * 8 7 5 36 36 H 1.08008 * 120.00028 * 180.02562 * 9 8 7 37 37 H 0.97000 * 120.00216 * 179.72715 * 12 11 10 38 38 H 0.97003 * 119.99800 * 359.72492 * 12 11 10 39 39 H 1.07997 * 119.99773 * 179.74306 * 14 10 9 40 40 H 1.08007 * 119.99862 * 180.27293 * 15 14 10 41 41 H 1.09002 * 109.46068 * 178.63938 * 16 2 1 42 42 H 1.09001 * 109.46448 * 298.60011 * 16 2 1 43 43 H 1.09002 * 109.49734 * 181.31804 * 17 16 2 44 44 H 1.09004 * 109.49974 * 301.41289 * 17 16 2 45 45 H 1.09002 * 109.58842 * 65.15108 * 18 17 16 46 46 H 1.08999 * 109.59076 * 185.57660 * 18 17 16 47 47 H 0.96994 * 119.99891 * 180.02562 * 23 22 20 48 48 H 1.09003 * 109.58728 * 186.60334 * 28 19 18 49 49 H 1.09000 * 109.58703 * 66.17792 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0406 1.4423 0.0000 4 7 1.5513 2.1334 -1.1954 5 6 1.8777 3.4236 -1.4089 6 8 2.5782 4.0134 -0.6099 7 6 1.3838 4.1219 -2.6171 8 6 1.7213 5.4579 -2.8378 9 6 1.2610 6.1081 -3.9625 10 6 0.4570 5.4307 -4.8803 11 6 -0.0378 6.1294 -6.0879 12 7 -0.8189 5.4767 -6.9714 13 8 0.2565 7.2926 -6.2804 14 6 0.1151 4.0962 -4.6568 15 6 0.5800 3.4444 -3.5351 16 6 2.0407 -0.7226 1.2486 17 6 1.5036 -2.1556 1.2663 18 6 2.0153 -2.9038 0.0314 19 7 1.6529 -2.1383 -1.1692 20 6 0.9655 -2.7319 -2.1940 21 1 0.3099 -3.5662 -1.9926 22 6 1.1113 -2.2614 -3.4918 23 7 2.1358 -1.4960 -3.8031 24 14 -0.1465 -2.7145 -4.7963 25 1 -1.2291 -1.6982 -4.8144 26 1 0.5134 -2.7584 -6.1260 27 1 -0.7236 -4.0471 -4.4859 28 6 2.0420 -0.7238 -1.2493 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3635 0.5138 0.8899 32 1 3.1306 1.4418 -0.0005 33 1 1.6784 1.9560 0.8905 34 1 0.9931 1.6624 -1.8337 35 1 2.3431 5.9823 -2.1274 36 1 1.5225 7.1420 -4.1336 37 1 -1.1464 5.9356 -7.7608 38 1 -1.0535 4.5481 -6.8179 39 1 -0.5105 3.5732 -5.3649 40 1 0.3190 2.4103 -3.3643 41 1 3.1305 -0.7435 1.2359 42 1 1.6982 -0.1954 2.1390 43 1 1.8486 -2.6623 2.1676 44 1 0.4138 -2.1358 1.2541 45 1 3.0993 -3.0036 0.0877 46 1 1.5573 -3.8919 -0.0131 47 1 2.2375 -1.1670 -4.7099 48 1 1.6015 -0.2734 -2.1388 49 1 3.1281 -0.6457 -1.2974 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484176533.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:22 Heat of formation + Delta-G solvation = -35.170027 kcal Electronic energy + Delta-G solvation = -30767.003862 eV Core-core repulsion = 26693.943474 eV Total energy + Delta-G solvation = -4073.060388 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -40.56179 -39.72179 -38.60382 -37.66650 -34.90279 -34.15666 -33.34609 -31.95293 -31.10923 -30.89367 -29.92951 -26.73424 -26.07456 -25.39827 -24.48056 -22.74569 -22.31329 -21.45514 -20.61559 -20.07669 -18.74605 -18.12924 -17.48668 -17.02438 -16.70955 -15.94405 -15.33229 -15.29100 -15.04766 -14.85565 -14.64699 -14.50622 -14.10383 -13.94962 -13.74277 -13.68763 -13.55104 -13.20092 -12.87993 -12.63435 -12.55314 -12.29998 -12.23951 -11.68095 -11.40009 -11.32239 -11.04691 -10.94361 -10.73813 -10.46609 -10.41122 -10.25740 -10.16644 -10.03887 -9.94147 -9.86700 -9.60026 -9.45057 -9.25790 -9.24979 -8.77469 -8.57427 -6.75365 -5.88871 -3.30799 0.28514 1.13025 2.32998 3.10764 3.16786 3.25118 3.31673 3.34959 3.36045 3.77826 4.38759 4.42957 4.51083 4.67999 4.82869 5.05860 5.08310 5.17056 5.21249 5.37144 5.43928 5.45394 5.52356 5.71403 5.72852 5.88711 5.95715 5.97993 6.01213 6.03432 6.09898 6.15396 6.19773 6.35269 6.37763 6.43312 6.48127 6.52865 6.56062 6.67485 6.76998 6.81396 6.90099 6.98080 6.98650 7.20893 7.48570 7.68562 7.69679 7.91807 8.32195 8.33931 9.11065 9.74324 10.32008 11.18915 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010386 B = 0.003447 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2695.368065 B = 8121.587561 C =10337.961285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.104 4.104 3 C 0.135 3.865 4 N -0.708 5.708 5 C 0.552 3.448 6 O -0.543 6.543 7 C -0.099 4.099 8 C -0.070 4.070 9 C -0.069 4.069 10 C -0.123 4.123 11 C 0.565 3.435 12 N -0.850 5.850 13 O -0.540 6.540 14 C -0.091 4.091 15 C -0.089 4.089 16 C -0.095 4.095 17 C -0.135 4.135 18 C 0.143 3.857 19 N -0.589 5.589 20 C -0.248 4.248 21 H 0.065 0.935 22 C 0.003 3.997 23 N -0.902 5.902 24 Si 0.897 3.103 25 H -0.288 1.288 26 H -0.292 1.292 27 H -0.279 1.279 28 C 0.186 3.814 29 H 0.043 0.957 30 H 0.072 0.928 31 H 0.037 0.963 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.405 0.595 35 H 0.144 0.856 36 H 0.142 0.858 37 H 0.405 0.595 38 H 0.403 0.597 39 H 0.133 0.867 40 H 0.138 0.862 41 H 0.056 0.944 42 H 0.048 0.952 43 H 0.050 0.950 44 H 0.062 0.938 45 H 0.017 0.983 46 H 0.052 0.948 47 H 0.253 0.747 48 H 0.087 0.913 49 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.681 9.113 0.923 10.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.106 4.106 3 C 0.011 3.989 4 N -0.360 5.360 5 C 0.338 3.662 6 O -0.422 6.422 7 C -0.103 4.103 8 C -0.089 4.089 9 C -0.087 4.087 10 C -0.126 4.126 11 C 0.351 3.649 12 N -0.414 5.414 13 O -0.418 6.418 14 C -0.110 4.110 15 C -0.108 4.108 16 C -0.133 4.133 17 C -0.174 4.174 18 C 0.016 3.984 19 N -0.311 5.311 20 C -0.378 4.378 21 H 0.083 0.917 22 C -0.196 4.196 23 N -0.546 5.546 24 Si 0.727 3.273 25 H -0.215 1.215 26 H -0.218 1.218 27 H -0.205 1.205 28 C 0.059 3.941 29 H 0.062 0.938 30 H 0.091 0.909 31 H 0.056 0.944 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.243 0.757 35 H 0.162 0.838 36 H 0.160 0.840 37 H 0.236 0.764 38 H 0.233 0.767 39 H 0.150 0.850 40 H 0.156 0.844 41 H 0.075 0.925 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.081 0.919 45 H 0.035 0.965 46 H 0.071 0.929 47 H 0.063 0.937 48 H 0.105 0.895 49 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -4.855 10.264 1.364 11.436 hybrid contribution -1.105 -0.890 -1.407 1.998 sum -5.960 9.374 -0.043 11.108 Atomic orbital electron populations 1.21726 0.94501 1.02689 0.99422 1.21554 0.96481 0.92646 0.99891 1.21436 0.99060 0.92058 0.86297 1.46019 1.52699 1.11259 1.26036 1.18243 0.80537 0.82025 0.85381 1.90746 1.38121 1.66528 1.46764 1.20272 0.99235 0.95132 0.95644 1.21276 0.97717 0.93077 0.96817 1.21238 0.94678 1.00579 0.92246 1.20032 1.01643 0.94737 0.96188 1.18331 0.77718 0.85977 0.82896 1.43773 1.53773 1.17059 1.26800 1.90809 1.57889 1.16547 1.76508 1.21213 0.99066 0.93223 0.97478 1.21382 0.95811 1.00239 0.93363 1.21347 1.00010 0.96011 0.95978 1.22046 1.00981 0.95690 0.98699 1.20939 0.96428 0.94247 0.86737 1.43992 1.65322 1.05566 1.16194 1.19201 1.17820 1.14923 0.85812 0.91686 1.24998 0.97012 1.00759 0.96804 1.70047 1.27238 1.38595 1.18753 0.86368 0.81125 0.78416 0.81394 1.21497 1.21807 1.20454 1.20791 0.96260 0.83794 0.93225 0.93820 0.90882 0.94426 0.91569 0.92014 0.75676 0.83816 0.84012 0.76362 0.76677 0.84965 0.84443 0.92505 0.93326 0.93166 0.91945 0.96517 0.92916 0.93661 0.89464 0.96387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.00 7.81 37.15 0.29 -1.71 16 2 C -0.10 -1.72 0.53 -154.39 -0.08 -1.80 16 3 C 0.14 2.13 4.57 -4.04 -0.02 2.12 16 4 N -0.71 -10.88 4.95 -61.19 -0.30 -11.18 16 5 C 0.55 8.74 7.78 -12.24 -0.10 8.65 16 6 O -0.54 -10.03 16.33 5.34 0.09 -9.95 16 7 C -0.10 -1.34 5.88 -104.90 -0.62 -1.96 16 8 C -0.07 -0.87 9.58 -39.24 -0.38 -1.24 16 9 C -0.07 -0.79 9.58 -39.24 -0.38 -1.17 16 10 C -0.12 -1.36 5.88 -104.90 -0.62 -1.98 16 11 C 0.56 6.34 8.05 -12.24 -0.10 6.24 16 12 N -0.85 -6.10 8.82 30.57 0.27 -5.83 16 13 O -0.54 -7.95 17.17 5.34 0.09 -7.86 16 14 C -0.09 -0.92 9.53 -39.24 -0.37 -1.29 16 15 C -0.09 -1.06 9.53 -39.24 -0.37 -1.43 16 16 C -0.10 -1.47 4.71 -26.69 -0.13 -1.60 16 17 C -0.14 -2.15 5.74 -26.61 -0.15 -2.30 16 18 C 0.14 2.78 6.52 -3.71 -0.02 2.75 16 19 N -0.59 -13.32 2.44 -172.32 -0.42 -13.74 16 20 C -0.25 -6.20 9.59 -15.06 -0.14 -6.35 16 21 H 0.07 1.63 7.89 -52.49 -0.41 1.21 16 22 C 0.00 0.07 4.91 -17.43 -0.09 -0.02 16 23 N -0.90 -23.81 11.19 55.49 0.62 -23.19 16 24 Si 0.90 19.82 29.59 -169.99 -5.03 14.79 16 25 H -0.29 -6.19 7.11 56.52 0.40 -5.78 16 26 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 27 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 28 C 0.19 3.90 3.73 -3.71 -0.01 3.89 16 29 H 0.04 0.68 6.86 -51.93 -0.36 0.32 16 30 H 0.07 1.29 5.97 -51.93 -0.31 0.98 16 31 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.41 6.06 4.24 -40.82 -0.17 5.89 16 35 H 0.14 1.72 7.64 -52.49 -0.40 1.32 16 36 H 0.14 1.53 7.64 -52.48 -0.40 1.13 16 37 H 0.41 2.32 8.93 -40.82 -0.36 1.96 16 38 H 0.40 1.97 6.85 -40.82 -0.28 1.69 16 39 H 0.13 0.93 6.39 -52.49 -0.34 0.59 16 40 H 0.14 1.57 6.39 -52.48 -0.34 1.23 16 41 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.06 1.00 6.33 -51.93 -0.33 0.67 16 45 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.05 1.01 7.93 -51.93 -0.41 0.60 16 47 H 0.25 6.51 8.31 -40.82 -0.34 6.18 16 48 H 0.09 1.98 4.95 -51.93 -0.26 1.72 16 49 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 LS Contribution 387.16 15.07 5.83 5.83 Total: -1.00 -31.39 387.16 -9.01 -40.40 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: -6.88 Total: 9.93 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: -3.28 Total: 0.79 kcal Atomic # 7 Polarization: -54.11 SS G_CDS: 0.17 Total: -53.94 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: 0.18 Total: -17.81 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.03 Total: 14.79 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.39 -9.01 -40.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484176533.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.233 kcal (2) G-P(sol) polarization free energy of solvation -31.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds