Wall clock time and date at job start Wed Apr 1 2020 06:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 110.38521 * 2 1 4 4 N 1.46500 * 109.47312 * 299.21941 * 3 2 1 5 5 C 1.36937 * 119.99664 * 179.97438 * 4 3 2 6 6 H 1.08001 * 120.00317 * 0.02562 * 5 4 3 7 7 C 1.38819 * 119.99497 * 179.97438 * 5 4 3 8 8 N 1.31620 * 119.99825 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 120.00165 * 0.02562 * 7 5 4 10 10 H 1.48494 * 109.47246 * 89.99463 * 9 7 5 11 11 H 1.48494 * 109.47168 * 209.99932 * 9 7 5 12 12 H 1.48506 * 109.47002 * 329.99256 * 9 7 5 13 13 C 1.54283 * 110.34271 * 237.77050 * 2 1 3 14 14 C 1.54391 * 105.05272 * 241.07368 * 13 2 1 15 15 N 1.48317 * 104.53792 * 336.26252 * 14 13 2 16 16 C 1.34769 * 127.77054 * 219.51516 * 15 14 13 17 17 O 1.21277 * 120.00077 * 179.97438 * 16 15 14 18 18 C 1.50703 * 119.99931 * 359.93266 * 16 15 14 19 19 C 1.50703 * 109.47021 * 180.02562 * 18 16 15 20 20 C 1.38364 * 119.85072 * 269.72372 * 19 18 16 21 21 C 1.37960 * 120.13971 * 179.72647 * 20 19 18 22 22 C 1.39583 * 119.85439 * 0.54693 * 21 20 19 23 23 C 1.47843 * 120.14472 * 179.70587 * 22 21 20 24 24 N 1.34778 * 119.99728 * 0.02562 * 23 22 21 25 25 O 1.21547 * 120.00022 * 180.02562 * 23 22 21 26 26 C 1.39577 * 119.70642 * 359.72930 * 22 21 20 27 27 C 1.37950 * 119.85817 * 359.97438 * 26 22 21 28 28 C 1.48146 * 104.39133 * 39.45765 * 15 14 13 29 29 H 1.09004 * 109.46749 * 180.77405 * 1 2 3 30 30 H 1.09000 * 109.46913 * 300.77477 * 1 2 3 31 31 H 1.08993 * 109.46943 * 60.77923 * 1 2 3 32 32 H 1.08999 * 109.47461 * 59.22741 * 3 2 1 33 33 H 1.09004 * 109.47274 * 179.21933 * 3 2 1 34 34 H 0.96997 * 119.99823 * 0.02562 * 4 3 2 35 35 H 0.97002 * 120.00143 * 180.02562 * 8 7 5 36 36 H 1.09002 * 110.34406 * 359.97438 * 13 2 1 37 37 H 1.09000 * 110.34365 * 122.15120 * 13 2 1 38 38 H 1.09000 * 110.40460 * 94.96891 * 14 13 2 39 39 H 1.08992 * 110.40933 * 217.40455 * 14 13 2 40 40 H 1.09004 * 109.47034 * 300.00001 * 18 16 15 41 41 H 1.08998 * 109.47124 * 60.00094 * 18 16 15 42 42 H 1.07994 * 119.92874 * 0.02562 * 20 19 18 43 43 H 1.07998 * 120.07390 * 180.29777 * 21 20 19 44 44 H 0.96997 * 120.00237 * 0.02562 * 24 23 22 45 45 H 0.97007 * 119.99720 * 180.02562 * 24 23 22 46 46 H 1.08004 * 120.06453 * 179.97438 * 26 22 21 47 47 H 1.07998 * 119.92698 * 180.02562 * 27 26 22 48 48 H 1.09000 * 110.40949 * 201.69443 * 28 15 14 49 49 H 1.09000 * 110.50841 * 79.31045 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0630 1.4342 0.0000 4 7 1.6011 2.1268 -1.2055 5 6 1.9552 3.4315 -1.4235 6 1 2.5753 3.9498 -0.7070 7 6 1.5179 4.0877 -2.5660 8 7 1.8587 5.3416 -2.7759 9 14 0.4460 3.1911 -3.8055 10 1 -0.9837 3.3790 -3.4510 11 1 0.6955 3.7384 -5.1632 12 1 0.7743 1.7429 -3.7878 13 6 2.0664 -0.7715 -1.2237 14 6 2.8820 -1.9422 -0.6337 15 7 3.2665 -1.4817 0.7227 16 6 4.4424 -1.6664 1.3546 17 8 4.6061 -1.2251 2.4723 18 6 5.5537 -2.4223 0.6727 19 6 6.7505 -2.4882 1.5862 20 6 7.7125 -1.4951 1.5337 21 6 8.8077 -1.5466 2.3711 22 6 8.9498 -2.6095 3.2646 23 6 10.1242 -2.6745 4.1603 24 7 11.0602 -1.7058 4.1156 25 8 10.2456 -3.6015 4.9371 26 6 7.9786 -3.6110 3.3083 27 6 6.8851 -3.5443 2.4698 28 6 2.0668 -0.7721 1.2245 29 1 -0.3633 -1.0276 0.0139 30 1 -0.3633 0.5258 0.8830 31 1 -0.3633 0.5017 -0.8968 32 1 1.6967 1.9579 0.8829 33 1 3.1528 1.4168 0.0140 34 1 1.0439 1.6615 -1.8487 35 1 1.5528 5.8002 -3.5740 36 1 1.2399 -1.1509 -1.8246 37 1 2.7081 -0.1282 -1.8258 38 1 2.2668 -2.8397 -0.5697 39 1 3.7688 -2.1305 -1.2387 40 1 5.2172 -3.4330 0.4418 41 1 5.8281 -1.9109 -0.2499 42 1 7.6033 -0.6754 0.8391 43 1 9.5555 -0.7683 2.3326 44 1 10.9632 -0.9658 3.4960 45 1 11.8310 -1.7486 4.7031 46 1 8.0829 -4.4363 3.9971 47 1 6.1328 -4.3184 2.5030 48 1 2.3401 -0.0794 2.0206 49 1 1.3227 -1.4846 1.5806 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569695078.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:26:45 Heat of formation + Delta-G solvation = -33.208788 kcal Electronic energy + Delta-G solvation = -29610.064566 eV Core-core repulsion = 25537.089223 eV Total energy + Delta-G solvation = -4072.975343 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.62544 -40.09389 -38.81021 -37.82025 -34.96485 -34.27594 -33.13619 -32.60438 -31.19832 -30.76645 -29.63062 -28.67297 -26.46569 -25.70870 -23.58103 -23.00812 -22.97670 -22.04752 -20.74736 -19.45552 -18.90741 -18.48450 -17.70867 -17.21022 -17.04245 -16.15274 -15.96629 -15.44665 -15.17815 -15.11700 -15.00404 -14.60842 -14.38929 -14.05426 -13.87412 -13.64092 -13.55328 -13.51604 -13.22589 -12.68783 -12.60693 -12.46722 -12.23986 -12.17774 -12.06744 -11.95385 -11.44173 -11.35357 -11.32135 -10.93656 -10.73492 -10.51718 -10.40179 -10.35927 -10.08663 -10.06862 -9.95884 -9.60409 -9.25886 -9.05267 -8.93524 -8.76618 -7.25888 -5.79686 -3.15070 0.51103 1.11558 2.49152 2.56029 2.91399 3.15490 3.30830 3.33944 3.40614 3.59207 4.26281 4.35684 4.41917 4.54207 4.54735 4.61013 4.67095 4.78412 4.86909 4.96187 5.02297 5.14410 5.17791 5.27507 5.29767 5.35398 5.49309 5.52822 5.58515 5.67885 5.69094 5.71100 5.79633 5.80523 5.95528 6.01223 6.02374 6.12896 6.22855 6.24616 6.38129 6.39424 6.42506 6.58104 6.65404 6.72233 6.95248 7.48524 7.89157 7.97204 8.08711 8.39267 9.18461 9.90330 10.10667 11.38911 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015970 B = 0.002165 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.912242 B =12928.203318 C =13964.543874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.085 4.085 3 C 0.173 3.827 4 N -0.752 5.752 5 C -0.242 4.242 6 H 0.089 0.911 7 C 0.003 3.997 8 N -0.934 5.934 9 Si 0.883 3.117 10 H -0.284 1.284 11 H -0.291 1.291 12 H -0.277 1.277 13 C -0.130 4.130 14 C 0.101 3.899 15 N -0.621 5.621 16 C 0.536 3.464 17 O -0.533 6.533 18 C -0.104 4.104 19 C -0.034 4.034 20 C -0.111 4.111 21 C -0.082 4.082 22 C -0.145 4.145 23 C 0.566 3.434 24 N -0.852 5.852 25 O -0.544 6.544 26 C -0.057 4.057 27 C -0.113 4.113 28 C 0.118 3.882 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.028 0.972 33 H 0.026 0.974 34 H 0.361 0.639 35 H 0.259 0.741 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.105 0.895 41 H 0.108 0.892 42 H 0.131 0.869 43 H 0.127 0.873 44 H 0.402 0.598 45 H 0.404 0.596 46 H 0.136 0.864 47 H 0.128 0.872 48 H 0.085 0.915 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.531 -20.498 6.617 23.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.086 4.086 3 C 0.046 3.954 4 N -0.399 5.399 5 C -0.372 4.372 6 H 0.107 0.893 7 C -0.192 4.192 8 N -0.582 5.582 9 Si 0.713 3.287 10 H -0.211 1.211 11 H -0.218 1.218 12 H -0.204 1.204 13 C -0.168 4.168 14 C -0.022 4.022 15 N -0.355 5.355 16 C 0.325 3.675 17 O -0.409 6.409 18 C -0.144 4.144 19 C -0.034 4.034 20 C -0.129 4.129 21 C -0.101 4.101 22 C -0.148 4.148 23 C 0.352 3.648 24 N -0.416 5.416 25 O -0.422 6.422 26 C -0.076 4.076 27 C -0.131 4.131 28 C -0.005 4.005 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.046 0.954 33 H 0.044 0.956 34 H 0.194 0.806 35 H 0.069 0.931 36 H 0.095 0.905 37 H 0.105 0.895 38 H 0.089 0.911 39 H 0.097 0.903 40 H 0.123 0.877 41 H 0.126 0.874 42 H 0.149 0.851 43 H 0.144 0.856 44 H 0.232 0.768 45 H 0.235 0.765 46 H 0.154 0.846 47 H 0.146 0.854 48 H 0.103 0.897 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 10.761 -20.709 7.750 24.591 hybrid contribution -0.589 0.041 -1.216 1.352 sum 10.172 -20.668 6.534 23.944 Atomic orbital electron populations 1.21796 0.93386 1.00890 1.03004 1.21746 0.96179 0.96690 0.93995 1.20632 0.96464 0.88027 0.90303 1.42704 1.62444 1.11962 1.22747 1.19059 1.26556 0.86332 1.05254 0.89321 1.24673 1.00556 0.95869 0.98116 1.69702 1.49886 1.10069 1.28574 0.86571 0.81133 0.79125 0.81826 1.21068 1.21751 1.20363 1.22700 1.00165 0.96348 0.97595 1.22498 0.99366 0.97507 0.82832 1.48998 1.13062 1.55751 1.17730 1.19973 0.81525 0.80192 0.85821 1.90750 1.80605 1.50420 1.19134 1.20737 0.92091 1.02570 0.98997 1.19543 0.94069 0.94294 0.95518 1.20990 0.93818 0.98362 0.99748 1.21214 0.97833 0.96590 0.94467 1.19838 0.96907 0.98172 0.99893 1.18320 0.82533 0.81631 0.82276 1.43765 1.26256 1.27275 1.44265 1.90807 1.77678 1.34031 1.39636 1.21196 0.92042 0.97393 0.96935 1.20974 0.97853 0.98590 0.95724 1.22396 0.85773 0.95338 0.97014 0.93026 0.92175 0.91781 0.95394 0.95579 0.80578 0.93067 0.90465 0.89528 0.91059 0.90348 0.87709 0.87423 0.85132 0.85553 0.76841 0.76469 0.84647 0.85378 0.89687 0.91066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.71 8.07 37.16 0.30 -1.41 16 2 C -0.08 -1.17 0.73 -153.11 -0.11 -1.28 16 3 C 0.17 3.24 4.90 -4.04 -0.02 3.22 16 4 N -0.75 -17.03 4.73 -59.91 -0.28 -17.31 16 5 C -0.24 -6.72 10.47 -15.06 -0.16 -6.88 16 6 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 7 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 8 N -0.93 -29.03 13.97 55.49 0.78 -28.26 16 9 Si 0.88 21.40 27.74 -169.99 -4.71 16.68 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 12 H -0.28 -6.17 6.52 56.52 0.37 -5.80 16 13 C -0.13 -1.58 5.78 -25.33 -0.15 -1.72 16 14 C 0.10 0.93 6.92 -2.31 -0.02 0.92 16 15 N -0.62 -7.34 3.32 -169.17 -0.56 -7.91 16 16 C 0.54 6.80 7.91 -10.99 -0.09 6.72 16 17 O -0.53 -8.92 16.30 5.56 0.09 -8.83 16 18 C -0.10 -0.91 4.80 -29.03 -0.14 -1.05 16 19 C -0.03 -0.33 4.38 -104.53 -0.46 -0.79 16 20 C -0.11 -1.06 9.68 -39.64 -0.38 -1.45 16 21 C -0.08 -0.71 9.54 -39.18 -0.37 -1.09 16 22 C -0.14 -1.48 5.87 -104.97 -0.62 -2.09 16 23 C 0.57 5.93 8.05 -12.33 -0.10 5.83 16 24 N -0.85 -5.31 8.82 30.53 0.27 -5.04 16 25 O -0.54 -7.71 17.18 5.32 0.09 -7.62 16 26 C -0.06 -0.59 9.60 -39.19 -0.38 -0.97 16 27 C -0.11 -1.10 9.68 -39.64 -0.38 -1.48 16 28 C 0.12 1.49 6.15 -2.41 -0.01 1.47 16 29 H 0.05 0.53 8.12 -51.93 -0.42 0.10 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.93 7.01 -51.93 -0.36 0.57 16 32 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.36 7.84 4.14 -40.82 -0.17 7.67 16 35 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 36 H 0.08 0.84 7.71 -51.93 -0.40 0.44 16 37 H 0.09 1.27 7.48 -51.93 -0.39 0.88 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.58 7.31 -51.93 -0.38 0.20 16 40 H 0.10 0.65 8.08 -51.93 -0.42 0.23 16 41 H 0.11 0.78 7.89 -51.93 -0.41 0.37 16 42 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 43 H 0.13 0.69 6.41 -52.49 -0.34 0.35 16 44 H 0.40 1.48 6.86 -40.82 -0.28 1.20 16 45 H 0.40 1.97 8.93 -40.82 -0.36 1.60 16 46 H 0.14 1.36 7.65 -52.48 -0.40 0.96 16 47 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 48 H 0.08 1.23 7.60 -51.93 -0.39 0.84 16 49 H 0.07 0.77 7.85 -51.93 -0.41 0.37 16 LS Contribution 398.92 15.07 6.01 6.01 Total: -1.00 -37.28 398.92 -8.77 -46.05 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -7.26 Total: 8.27 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: -3.18 Total: -2.04 kcal Atomic # 7 Polarization: -58.72 SS G_CDS: 0.20 Total: -58.52 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: 0.18 Total: -16.45 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.71 Total: 16.68 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -37.28 -8.77 -46.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569695078.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.841 kcal (2) G-P(sol) polarization free energy of solvation -37.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds