Wall clock time and date at job start Wed Apr 1 2020 06:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 110.38521 * 2 1 4 4 N 1.46500 * 109.47312 * 299.21941 * 3 2 1 5 5 C 1.36937 * 119.99664 * 179.97438 * 4 3 2 6 6 H 1.08001 * 120.00317 * 0.02562 * 5 4 3 7 7 C 1.38819 * 119.99497 * 179.97438 * 5 4 3 8 8 N 1.31620 * 119.99825 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 120.00165 * 0.02562 * 7 5 4 10 10 H 1.48494 * 109.47246 * 89.99463 * 9 7 5 11 11 H 1.48494 * 109.47168 * 209.99932 * 9 7 5 12 12 H 1.48506 * 109.47002 * 329.99256 * 9 7 5 13 13 C 1.54283 * 110.34271 * 237.77050 * 2 1 3 14 14 C 1.54391 * 105.05272 * 241.07368 * 13 2 1 15 15 N 1.48317 * 104.53792 * 336.26252 * 14 13 2 16 16 C 1.34769 * 127.77054 * 219.51516 * 15 14 13 17 17 O 1.21277 * 120.00077 * 179.97438 * 16 15 14 18 18 C 1.50703 * 119.99931 * 359.93266 * 16 15 14 19 19 C 1.50703 * 109.47021 * 180.02562 * 18 16 15 20 20 C 1.38364 * 119.85072 * 269.72372 * 19 18 16 21 21 C 1.37960 * 120.13971 * 179.72647 * 20 19 18 22 22 C 1.39583 * 119.85439 * 0.54693 * 21 20 19 23 23 C 1.47843 * 120.14472 * 179.70587 * 22 21 20 24 24 N 1.34778 * 119.99728 * 0.02562 * 23 22 21 25 25 O 1.21547 * 120.00022 * 180.02562 * 23 22 21 26 26 C 1.39577 * 119.70642 * 359.72930 * 22 21 20 27 27 C 1.37950 * 119.85817 * 359.97438 * 26 22 21 28 28 C 1.48146 * 104.39133 * 39.45765 * 15 14 13 29 29 H 1.09004 * 109.46749 * 180.77405 * 1 2 3 30 30 H 1.09000 * 109.46913 * 300.77477 * 1 2 3 31 31 H 1.08993 * 109.46943 * 60.77923 * 1 2 3 32 32 H 1.08999 * 109.47461 * 59.22741 * 3 2 1 33 33 H 1.09004 * 109.47274 * 179.21933 * 3 2 1 34 34 H 0.96997 * 119.99823 * 0.02562 * 4 3 2 35 35 H 0.97002 * 120.00143 * 180.02562 * 8 7 5 36 36 H 1.09002 * 110.34406 * 359.97438 * 13 2 1 37 37 H 1.09000 * 110.34365 * 122.15120 * 13 2 1 38 38 H 1.09000 * 110.40460 * 94.96891 * 14 13 2 39 39 H 1.08992 * 110.40933 * 217.40455 * 14 13 2 40 40 H 1.09004 * 109.47034 * 300.00001 * 18 16 15 41 41 H 1.08998 * 109.47124 * 60.00094 * 18 16 15 42 42 H 1.07994 * 119.92874 * 0.02562 * 20 19 18 43 43 H 1.07998 * 120.07390 * 180.29777 * 21 20 19 44 44 H 0.96997 * 120.00237 * 0.02562 * 24 23 22 45 45 H 0.97007 * 119.99720 * 180.02562 * 24 23 22 46 46 H 1.08004 * 120.06453 * 179.97438 * 26 22 21 47 47 H 1.07998 * 119.92698 * 180.02562 * 27 26 22 48 48 H 1.09000 * 110.40949 * 201.69443 * 28 15 14 49 49 H 1.09000 * 110.50841 * 79.31045 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0630 1.4342 0.0000 4 7 1.6011 2.1268 -1.2055 5 6 1.9552 3.4315 -1.4235 6 1 2.5753 3.9498 -0.7070 7 6 1.5179 4.0877 -2.5660 8 7 1.8587 5.3416 -2.7759 9 14 0.4460 3.1911 -3.8055 10 1 -0.9837 3.3790 -3.4510 11 1 0.6955 3.7384 -5.1632 12 1 0.7743 1.7429 -3.7878 13 6 2.0664 -0.7715 -1.2237 14 6 2.8820 -1.9422 -0.6337 15 7 3.2665 -1.4817 0.7227 16 6 4.4424 -1.6664 1.3546 17 8 4.6061 -1.2251 2.4723 18 6 5.5537 -2.4223 0.6727 19 6 6.7505 -2.4882 1.5862 20 6 7.7125 -1.4951 1.5337 21 6 8.8077 -1.5466 2.3711 22 6 8.9498 -2.6095 3.2646 23 6 10.1242 -2.6745 4.1603 24 7 11.0602 -1.7058 4.1156 25 8 10.2456 -3.6015 4.9371 26 6 7.9786 -3.6110 3.3083 27 6 6.8851 -3.5443 2.4698 28 6 2.0668 -0.7721 1.2245 29 1 -0.3633 -1.0276 0.0139 30 1 -0.3633 0.5258 0.8830 31 1 -0.3633 0.5017 -0.8968 32 1 1.6967 1.9579 0.8829 33 1 3.1528 1.4168 0.0140 34 1 1.0439 1.6615 -1.8487 35 1 1.5528 5.8002 -3.5740 36 1 1.2399 -1.1509 -1.8246 37 1 2.7081 -0.1282 -1.8258 38 1 2.2668 -2.8397 -0.5697 39 1 3.7688 -2.1305 -1.2387 40 1 5.2172 -3.4330 0.4418 41 1 5.8281 -1.9109 -0.2499 42 1 7.6033 -0.6754 0.8391 43 1 9.5555 -0.7683 2.3326 44 1 10.9632 -0.9658 3.4960 45 1 11.8310 -1.7486 4.7031 46 1 8.0829 -4.4363 3.9971 47 1 6.1328 -4.3184 2.5030 48 1 2.3401 -0.0794 2.0206 49 1 1.3227 -1.4846 1.5806 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569695078.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:26:44 Heat of formation + Delta-G solvation = -60.729040 kcal Electronic energy + Delta-G solvation = -29611.257934 eV Core-core repulsion = 25537.089223 eV Total energy + Delta-G solvation = -4074.168710 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.46750 -40.97682 -39.71637 -38.80010 -36.54433 -35.02882 -34.43341 -33.65329 -32.57691 -31.89902 -30.54770 -29.48266 -27.81450 -26.97615 -24.61092 -23.87477 -23.76869 -23.68162 -21.49719 -20.52808 -20.09642 -19.46370 -19.17518 -18.04181 -17.92405 -17.09817 -16.81037 -16.53338 -16.22270 -16.02926 -15.94016 -15.82970 -15.63768 -15.18144 -15.13531 -14.81920 -14.62781 -14.32036 -14.30038 -14.25580 -13.61350 -13.45693 -13.38971 -13.10433 -13.06694 -12.88697 -12.83656 -12.67266 -12.45641 -12.15004 -12.00604 -11.92105 -11.71810 -11.53224 -11.34970 -11.25394 -10.99999 -10.95461 -10.78422 -9.96935 -9.79527 -9.70188 -9.30644 -8.02835 -5.36979 -0.23577 0.40208 1.36875 1.42932 1.50239 1.63642 1.70637 2.07514 2.48886 2.50444 2.84774 3.27723 3.35903 3.57127 3.67595 3.76662 3.79273 3.84840 3.89737 4.00089 4.07871 4.27348 4.30830 4.36275 4.37219 4.44731 4.56589 4.62063 4.67237 4.77820 4.80485 4.83533 4.89292 4.94632 5.01749 5.03322 5.07532 5.19515 5.24202 5.31095 5.32636 5.39616 5.51788 5.54500 5.74200 5.80470 5.88882 6.20401 6.34935 6.60535 7.07772 7.16501 7.22219 7.81840 8.05542 9.19066 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015970 B = 0.002165 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.912242 B =12928.203318 C =13964.543874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.077 4.077 3 C 0.173 3.827 4 N -0.746 5.746 5 C -0.237 4.237 6 H 0.045 0.955 7 C -0.066 4.066 8 N -0.986 5.986 9 Si 0.958 3.042 10 H -0.277 1.277 11 H -0.296 1.296 12 H -0.241 1.241 13 C -0.131 4.131 14 C 0.105 3.895 15 N -0.624 5.624 16 C 0.530 3.470 17 O -0.585 6.585 18 C -0.096 4.096 19 C -0.044 4.044 20 C -0.126 4.126 21 C -0.079 4.079 22 C -0.160 4.160 23 C 0.562 3.438 24 N -0.830 5.830 25 O -0.590 6.590 26 C -0.074 4.074 27 C -0.118 4.118 28 C 0.120 3.880 29 H 0.089 0.911 30 H 0.052 0.948 31 H 0.048 0.952 32 H 0.010 0.990 33 H 0.006 0.994 34 H 0.370 0.630 35 H 0.258 0.742 36 H 0.100 0.900 37 H 0.058 0.942 38 H 0.106 0.894 39 H 0.103 0.897 40 H 0.138 0.862 41 H 0.126 0.874 42 H 0.140 0.860 43 H 0.156 0.844 44 H 0.416 0.584 45 H 0.413 0.587 46 H 0.130 0.870 47 H 0.145 0.855 48 H 0.055 0.945 49 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.488 -23.496 4.701 25.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.079 4.079 3 C 0.046 3.954 4 N -0.393 5.393 5 C -0.368 4.368 6 H 0.063 0.937 7 C -0.257 4.257 8 N -0.637 5.637 9 Si 0.784 3.216 10 H -0.203 1.203 11 H -0.223 1.223 12 H -0.165 1.165 13 C -0.169 4.169 14 C -0.016 4.016 15 N -0.357 5.357 16 C 0.320 3.680 17 O -0.465 6.465 18 C -0.135 4.135 19 C -0.045 4.045 20 C -0.144 4.144 21 C -0.098 4.098 22 C -0.163 4.163 23 C 0.349 3.651 24 N -0.394 5.394 25 O -0.472 6.472 26 C -0.093 4.093 27 C -0.136 4.136 28 C -0.003 4.003 29 H 0.108 0.892 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.028 0.972 33 H 0.024 0.976 34 H 0.205 0.795 35 H 0.067 0.933 36 H 0.118 0.882 37 H 0.077 0.923 38 H 0.124 0.876 39 H 0.121 0.879 40 H 0.156 0.844 41 H 0.144 0.856 42 H 0.158 0.842 43 H 0.174 0.826 44 H 0.249 0.751 45 H 0.245 0.755 46 H 0.148 0.852 47 H 0.163 0.837 48 H 0.074 0.926 49 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 9.732 -23.725 5.817 26.295 hybrid contribution -0.200 1.109 -0.528 1.245 sum 9.532 -22.615 5.289 25.105 Atomic orbital electron populations 1.21798 0.92104 1.03034 1.01927 1.21621 0.97070 0.93235 0.95952 1.20698 0.95326 0.91313 0.88021 1.42573 1.62374 1.10251 1.24105 1.18982 1.25297 0.88337 1.04225 0.93656 1.25590 1.02676 0.96778 1.00661 1.69909 1.51926 1.12339 1.29481 0.85375 0.78758 0.79644 0.77854 1.20326 1.22299 1.16452 1.22706 1.00842 0.96782 0.96568 1.22710 1.00593 0.97131 0.81171 1.49131 1.12583 1.55191 1.18785 1.20695 0.82199 0.79713 0.85375 1.90729 1.81509 1.52676 1.21580 1.20789 0.90004 1.03988 0.98673 1.19790 0.94609 0.94280 0.95800 1.21273 0.94196 0.98686 1.00230 1.21510 0.98253 0.96616 0.93373 1.19960 0.96984 0.98848 1.00489 1.18474 0.83126 0.81688 0.81831 1.43598 1.25387 1.26456 1.43970 1.90779 1.78777 1.36011 1.41593 1.21327 0.92827 0.97697 0.97424 1.21179 0.97880 0.99173 0.95388 1.22327 0.86936 0.95490 0.95590 0.89240 0.92870 0.93276 0.97171 0.97564 0.79497 0.93303 0.88157 0.92275 0.87616 0.87906 0.84365 0.85564 0.84246 0.82602 0.75138 0.75456 0.85220 0.83722 0.92645 0.88256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 8.07 71.98 0.58 -2.38 16 2 C -0.08 -1.98 0.73 -51.27 -0.04 -2.02 16 3 C 0.17 6.59 4.90 86.38 0.42 7.01 16 4 N -0.75 -33.71 4.73 -343.44 -1.62 -35.33 16 5 C -0.24 -13.58 10.47 84.04 0.88 -12.70 16 6 H 0.05 2.92 8.06 -2.91 -0.02 2.89 16 7 C -0.07 -3.84 5.50 84.86 0.47 -3.38 16 8 N -0.99 -63.15 13.97 21.65 0.30 -62.85 16 9 Si 0.96 43.59 27.74 68.60 1.90 45.50 16 10 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 11 H -0.30 -13.73 7.11 99.48 0.71 -13.02 16 12 H -0.24 -9.39 6.52 99.48 0.65 -8.74 16 13 C -0.13 -2.69 5.78 31.50 0.18 -2.50 16 14 C 0.11 1.44 6.92 86.50 0.60 2.04 16 15 N -0.62 -13.07 3.32 -807.52 -2.68 -15.75 16 16 C 0.53 12.51 7.91 87.66 0.69 13.20 16 17 O -0.58 -19.60 16.30 -3.02 -0.05 -19.65 16 18 C -0.10 -1.38 4.80 29.10 0.14 -1.24 16 19 C -0.04 -0.81 4.38 -19.80 -0.09 -0.89 16 20 C -0.13 -2.26 9.68 22.23 0.22 -2.04 16 21 C -0.08 -1.28 9.54 22.53 0.21 -1.07 16 22 C -0.16 -3.22 5.87 -20.09 -0.12 -3.34 16 23 C 0.56 11.79 8.05 86.79 0.70 12.49 16 24 N -0.83 -9.51 8.82 -175.61 -1.55 -11.06 16 25 O -0.59 -17.28 17.18 -3.86 -0.07 -17.35 16 26 C -0.07 -1.56 9.60 22.52 0.22 -1.34 16 27 C -0.12 -2.19 9.68 22.23 0.22 -1.97 16 28 C 0.12 2.81 6.15 86.53 0.53 3.34 16 29 H 0.09 1.37 8.12 -2.38 -0.02 1.35 16 30 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.05 1.27 7.01 -2.39 -0.02 1.25 16 32 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.01 0.27 8.14 -2.38 -0.02 0.25 16 34 H 0.37 15.33 4.14 -92.71 -0.38 14.94 16 35 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 36 H 0.10 1.64 7.71 -2.39 -0.02 1.62 16 37 H 0.06 1.57 7.48 -2.39 -0.02 1.55 16 38 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.10 0.96 7.31 -2.39 -0.02 0.94 16 40 H 0.14 1.07 8.08 -2.38 -0.02 1.05 16 41 H 0.13 1.37 7.89 -2.39 -0.02 1.35 16 42 H 0.14 2.17 8.06 -2.91 -0.02 2.14 16 43 H 0.16 1.39 6.41 -2.91 -0.02 1.37 16 44 H 0.42 2.33 6.86 -92.71 -0.64 1.69 16 45 H 0.41 3.61 8.93 -92.70 -0.83 2.78 16 46 H 0.13 2.77 7.65 -2.91 -0.02 2.75 16 47 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 48 H 0.05 1.63 7.60 -2.39 -0.02 1.61 16 49 H 0.10 1.81 7.85 -2.39 -0.02 1.79 16 Total: -1.00 -87.05 398.92 1.14 -85.91 By element: Atomic # 1 Polarization: 28.29 SS G_CDS: -0.91 Total: 27.38 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: 5.81 Total: 3.21 kcal Atomic # 7 Polarization: -119.45 SS G_CDS: -5.55 Total: -125.00 kcal Atomic # 8 Polarization: -36.88 SS G_CDS: -0.12 Total: -36.99 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 1.90 Total: 45.50 kcal Total: -87.05 1.14 -85.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569695078.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.178 kcal (2) G-P(sol) polarization free energy of solvation -87.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds