Wall clock time and date at job start Wed Apr 1 2020 06:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 110.27670 * 2 1 4 4 C 1.34783 * 119.99872 * 299.36457 * 3 2 1 5 5 O 1.21278 * 120.00050 * 0.02562 * 4 3 2 6 6 C 1.50698 * 119.99566 * 179.97438 * 4 3 2 7 7 C 1.50293 * 109.46213 * 180.02562 * 6 4 3 8 8 C 1.32295 * 121.59394 * 303.06407 * 7 6 4 9 9 C 1.45204 * 123.02713 * 1.25752 * 8 7 6 10 10 C 1.32945 * 125.19365 * 319.55196 * 9 8 7 11 11 C 1.45195 * 125.20330 * 0.02562 * 10 9 8 12 12 C 1.32297 * 123.02192 * 40.46114 * 11 10 9 13 13 C 1.54602 * 110.30941 * 237.91296 * 2 1 3 14 14 C 1.54936 * 102.91849 * 219.03140 * 13 2 1 15 15 N 1.48528 * 103.23269 * 37.41102 * 14 13 2 16 16 C 1.46898 * 111.00373 * 200.28143 * 15 14 13 17 17 C 1.50700 * 109.46938 * 290.12690 * 16 15 14 18 18 O 1.21294 * 119.99838 * 359.97438 * 17 16 15 19 19 N 1.34777 * 119.99870 * 179.97438 * 17 16 15 20 20 C 1.37095 * 119.99644 * 179.97438 * 19 17 16 21 21 H 1.08004 * 120.00613 * 0.02562 * 20 19 17 22 22 C 1.38950 * 120.00064 * 179.97438 * 20 19 17 23 23 N 1.31413 * 119.99708 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00388 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.46993 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47224 * 120.00408 * 24 22 20 27 27 H 1.48505 * 109.46976 * 240.00147 * 24 22 20 28 28 C 1.47909 * 105.81909 * 320.79535 * 15 14 13 29 29 H 1.09008 * 109.46820 * 59.29620 * 1 2 3 30 30 H 1.08994 * 109.47407 * 179.29684 * 1 2 3 31 31 H 1.08996 * 109.46871 * 299.30306 * 1 2 3 32 32 H 0.96993 * 120.00110 * 119.36180 * 3 2 1 33 33 H 1.09002 * 109.46396 * 299.98361 * 6 4 3 34 34 H 1.08002 * 119.20660 * 123.34846 * 7 6 4 35 35 H 1.08001 * 118.49211 * 181.28717 * 8 7 6 36 36 H 1.08001 * 117.40514 * 139.56527 * 9 8 7 37 37 H 1.08005 * 117.39456 * 180.02562 * 10 9 8 38 38 H 1.07998 * 118.49012 * 220.43297 * 11 10 9 39 39 H 1.08007 * 119.20312 * 178.99528 * 12 11 10 40 40 H 1.08999 * 110.71839 * 337.38273 * 13 2 1 41 41 H 1.08994 * 110.72638 * 100.49156 * 13 2 1 42 42 H 1.09006 * 110.66575 * 155.84983 * 14 13 2 43 43 H 1.09000 * 110.66566 * 278.80540 * 14 13 2 44 44 H 1.08998 * 109.47172 * 50.12209 * 16 15 14 45 45 H 1.09001 * 109.47410 * 170.12499 * 16 15 14 46 46 H 0.96994 * 119.99969 * 0.02562 * 19 17 16 47 47 H 0.97006 * 120.00212 * 179.97438 * 23 22 20 48 48 H 1.09005 * 109.91152 * 265.97792 * 28 15 14 49 49 H 1.08997 * 109.91983 * 144.68099 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0377 1.3742 0.0000 4 6 1.7343 2.2047 -1.0173 5 8 1.0407 1.8145 -1.9324 6 6 2.2561 3.6185 -1.0169 7 6 1.7775 4.3292 -2.2517 8 6 2.0339 3.8632 -3.4630 9 6 2.7647 2.6308 -3.6985 10 6 3.8350 2.2327 -3.0178 11 6 4.4516 2.9634 -1.9251 12 6 3.7534 3.5929 -0.9942 13 6 2.0666 -0.7702 -1.2284 14 6 3.2870 -1.5322 -0.6535 15 7 2.8345 -1.9221 0.7064 16 6 3.9795 -2.2234 1.5760 17 6 4.6304 -3.5050 1.1233 18 8 4.1841 -4.1082 0.1703 19 7 5.7085 -3.9808 1.7774 20 6 6.3004 -5.1469 1.3659 21 1 5.9030 -5.6841 0.5173 22 6 7.4121 -5.6373 2.0398 23 7 7.8959 -4.9835 3.0720 24 14 8.2191 -7.2259 1.4787 25 1 7.4882 -7.7640 0.3034 26 1 9.6310 -6.9585 1.1043 27 1 8.1791 -8.2182 2.5828 28 6 2.0665 -0.7680 1.2221 29 1 -0.3633 0.5248 -0.8837 30 1 -0.3634 -1.0275 -0.0126 31 1 -0.3633 0.5030 0.8961 32 1 2.5921 1.6864 0.7321 33 1 1.8901 4.1405 -0.1328 34 1 1.2145 5.2450 -2.1477 35 1 1.6839 4.4254 -4.3161 36 1 2.4108 1.9864 -4.4896 37 1 4.2815 1.2907 -3.3002 38 1 5.5297 2.9941 -1.8693 39 1 4.2759 4.1043 -0.1992 40 1 1.3179 -1.4680 -1.6033 41 1 2.3746 -0.0789 -2.0128 42 1 3.5068 -2.4152 -1.2537 43 1 4.1578 -0.8789 -0.5994 44 1 4.7022 -1.4094 1.5203 45 1 3.6355 -2.3341 2.6044 46 1 6.0651 -3.4986 2.5397 47 1 8.6719 -5.3260 3.5428 48 1 2.7180 -0.1215 1.8103 49 1 1.2357 -1.1185 1.8344 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716841979.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:06:36 Heat of formation + Delta-G solvation = -24.694071 kcal Electronic energy + Delta-G solvation = -30977.046059 eV Core-core repulsion = 26904.439942 eV Total energy + Delta-G solvation = -4072.606117 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 3.05 seconds Orbital eigenvalues (eV) -41.83605 -40.54388 -39.49552 -37.91789 -36.05301 -35.43229 -33.73096 -33.25838 -33.19107 -32.06647 -30.69702 -28.89644 -27.41643 -26.83881 -25.38459 -24.47951 -23.08985 -22.30838 -21.05584 -20.56198 -19.87329 -19.57698 -18.45645 -18.05740 -17.95530 -17.51880 -17.05798 -16.64963 -16.24224 -16.09930 -15.89486 -15.63948 -15.32218 -15.13145 -14.91236 -14.67074 -14.42618 -14.11584 -14.06974 -13.61303 -13.42257 -13.39684 -13.30308 -13.01300 -12.94036 -12.90366 -12.86120 -12.41551 -12.35957 -12.30844 -12.12158 -11.97048 -11.87735 -11.76665 -11.48539 -11.11437 -10.71555 -10.30540 -10.15643 -10.00349 -9.96144 -9.34230 -9.10349 -8.46544 -5.94563 0.34396 1.09663 1.35805 1.41046 1.54951 1.77165 2.06757 2.20111 2.28382 2.36610 2.87075 3.20236 3.32414 3.50504 3.73293 3.82853 3.90459 3.95630 4.05975 4.13606 4.21001 4.23246 4.28999 4.32695 4.36220 4.46097 4.51835 4.55264 4.60172 4.77896 4.82116 4.84599 4.90325 4.96488 5.02297 5.05332 5.11081 5.12864 5.33430 5.41453 5.55486 5.61861 5.68087 5.83434 5.83721 5.87630 5.93316 5.96143 6.10044 6.61834 6.69122 7.14279 7.41795 7.57670 8.14414 8.71195 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017521 B = 0.002453 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.686268 B =11410.257960 C =12016.626110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.176 3.824 3 N -0.710 5.710 4 C 0.522 3.478 5 O -0.554 6.554 6 C -0.050 4.050 7 C -0.126 4.126 8 C -0.121 4.121 9 C -0.085 4.085 10 C -0.156 4.156 11 C -0.124 4.124 12 C -0.137 4.137 13 C -0.111 4.111 14 C 0.049 3.951 15 N -0.509 5.509 16 C 0.050 3.950 17 C 0.441 3.559 18 O -0.617 6.617 19 N -0.575 5.575 20 C -0.330 4.330 21 H 0.076 0.924 22 C -0.012 4.012 23 N -0.920 5.920 24 Si 0.990 3.010 25 H -0.276 1.276 26 H -0.270 1.270 27 H -0.270 1.270 28 C 0.039 3.961 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.410 0.590 33 H 0.138 0.862 34 H 0.143 0.857 35 H 0.128 0.872 36 H 0.099 0.901 37 H 0.096 0.904 38 H 0.126 0.874 39 H 0.152 0.848 40 H 0.065 0.935 41 H 0.072 0.928 42 H 0.055 0.945 43 H 0.038 0.962 44 H 0.072 0.928 45 H 0.115 0.885 46 H 0.396 0.604 47 H 0.277 0.723 48 H 0.075 0.925 49 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.413 24.157 -2.698 26.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.089 3.911 3 N -0.363 5.363 4 C 0.309 3.691 5 O -0.431 6.431 6 C -0.071 4.071 7 C -0.144 4.144 8 C -0.139 4.139 9 C -0.103 4.103 10 C -0.174 4.174 11 C -0.142 4.142 12 C -0.154 4.154 13 C -0.150 4.150 14 C -0.079 4.079 15 N -0.234 5.234 16 C -0.082 4.082 17 C 0.229 3.771 18 O -0.503 6.503 19 N -0.213 5.213 20 C -0.459 4.459 21 H 0.094 0.906 22 C -0.212 4.212 23 N -0.561 5.561 24 Si 0.814 3.186 25 H -0.200 1.200 26 H -0.196 1.196 27 H -0.195 1.195 28 C -0.089 4.089 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.247 0.753 33 H 0.156 0.844 34 H 0.161 0.839 35 H 0.146 0.854 36 H 0.117 0.883 37 H 0.114 0.886 38 H 0.144 0.856 39 H 0.170 0.830 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.074 0.926 43 H 0.056 0.944 44 H 0.090 0.910 45 H 0.133 0.867 46 H 0.230 0.770 47 H 0.087 0.913 48 H 0.093 0.907 49 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -11.365 22.944 -3.860 25.894 hybrid contribution 1.679 -0.294 0.126 1.709 sum -9.686 22.650 -3.734 24.915 Atomic orbital electron populations 1.22058 0.92862 1.02543 1.02927 1.20914 0.94678 0.81272 0.94198 1.46080 1.53828 1.11235 1.25150 1.20817 0.79267 0.87775 0.81200 1.90673 1.39035 1.77393 1.36020 1.19293 0.94602 0.92413 1.00760 1.23006 0.98984 1.00763 0.91672 1.21179 0.99147 0.95161 0.98441 1.21094 0.94165 0.95895 0.99142 1.21092 0.98306 0.99529 0.98449 1.21269 1.00495 0.97770 0.94674 1.23049 0.92573 0.99973 0.99853 1.22711 0.96668 0.97976 0.97642 1.23063 0.96371 0.97787 0.90663 1.64456 1.20551 1.36496 1.01895 1.21952 0.92983 0.94416 0.98817 1.20792 0.82226 0.88902 0.85207 1.90492 1.65803 1.62571 1.31427 1.41915 1.26582 1.22809 1.29972 1.19647 1.10812 1.01117 1.14374 0.90630 1.25988 0.97009 1.02403 0.95807 1.69670 1.25095 1.40889 1.20480 0.84914 0.77970 0.77520 0.78198 1.20040 1.19561 1.19525 1.23275 0.98978 0.90800 0.95859 0.92122 0.91795 0.90858 0.75342 0.84417 0.83910 0.85428 0.88285 0.88609 0.85573 0.83021 0.91650 0.90958 0.92631 0.94369 0.91046 0.86698 0.76974 0.91324 0.90722 0.87891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.07 8.17 71.98 0.59 -2.48 16 2 C 0.18 3.85 0.95 4.48 0.00 3.86 16 3 N -0.71 -12.22 5.04 -418.94 -2.11 -14.33 16 4 C 0.52 10.17 4.67 87.66 0.41 10.58 16 5 O -0.55 -14.68 10.54 -3.02 -0.03 -14.71 16 6 C -0.05 -0.66 2.87 -13.45 -0.04 -0.70 16 7 C -0.13 -1.87 8.78 24.49 0.22 -1.66 16 8 C -0.12 -2.22 9.10 22.99 0.21 -2.01 16 9 C -0.08 -1.88 7.37 22.89 0.17 -1.71 16 10 C -0.16 -3.43 8.53 22.89 0.20 -3.23 16 11 C -0.12 -2.15 9.58 22.99 0.22 -1.93 16 12 C -0.14 -1.72 8.84 24.33 0.22 -1.50 16 13 C -0.11 -3.20 5.82 31.80 0.18 -3.01 16 14 C 0.05 1.65 5.86 86.65 0.51 2.16 16 15 N -0.51 -16.40 4.95 -887.57 -4.40 -20.80 16 16 C 0.05 1.68 5.18 85.56 0.44 2.12 16 17 C 0.44 21.15 7.58 87.66 0.66 21.82 16 18 O -0.62 -34.84 14.42 -3.07 -0.04 -34.88 16 19 N -0.57 -29.54 5.29 -306.98 -1.62 -31.17 16 20 C -0.33 -18.88 9.68 84.04 0.81 -18.06 16 21 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 22 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 23 N -0.92 -49.50 13.05 21.66 0.28 -49.22 16 24 Si 0.99 43.29 29.55 68.60 2.03 45.32 16 25 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 26 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 27 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 28 C 0.04 0.84 6.14 86.44 0.53 1.38 16 29 H 0.06 1.50 6.27 -2.38 -0.01 1.49 16 30 H 0.06 1.41 8.13 -2.39 -0.02 1.39 16 31 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.41 4.89 7.96 -92.71 -0.74 4.16 16 33 H 0.14 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.14 1.37 8.06 -2.91 -0.02 1.35 16 35 H 0.13 1.90 8.06 -2.91 -0.02 1.87 16 36 H 0.10 2.33 8.06 -2.91 -0.02 2.31 16 37 H 0.10 2.32 8.06 -2.91 -0.02 2.29 16 38 H 0.13 1.91 8.06 -2.91 -0.02 1.89 16 39 H 0.15 1.02 8.06 -2.91 -0.02 0.99 16 40 H 0.06 2.05 7.86 -2.39 -0.02 2.03 16 41 H 0.07 2.20 6.57 -2.39 -0.02 2.18 16 42 H 0.06 2.35 6.92 -2.38 -0.02 2.34 16 43 H 0.04 1.24 7.86 -2.39 -0.02 1.23 16 44 H 0.07 2.11 7.90 -2.39 -0.02 2.09 16 45 H 0.12 3.31 8.11 -2.39 -0.02 3.30 16 46 H 0.40 19.15 7.90 -92.71 -0.73 18.42 16 47 H 0.28 13.91 8.31 -92.70 -0.77 13.14 16 48 H 0.07 1.25 7.10 -2.38 -0.02 1.23 16 49 H 0.10 2.05 7.69 -2.39 -0.02 2.03 16 Total: -1.00 -73.99 389.14 -0.60 -74.59 By element: Atomic # 1 Polarization: 40.29 SS G_CDS: -0.50 Total: 39.79 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: 5.80 Total: 5.40 kcal Atomic # 7 Polarization: -107.67 SS G_CDS: -7.85 Total: -115.52 kcal Atomic # 8 Polarization: -49.51 SS G_CDS: -0.08 Total: -49.59 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -73.99 -0.60 -74.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716841979.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.897 kcal (2) G-P(sol) polarization free energy of solvation -73.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.05 seconds