Wall clock time and date at job start Wed Apr 1 2020 06:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 110.37101 * 2 1 4 4 C 1.34775 * 119.99834 * 60.72587 * 3 2 1 5 5 O 1.21281 * 120.00159 * 0.02562 * 4 3 2 6 6 C 1.50705 * 120.00442 * 179.97438 * 4 3 2 7 7 C 1.50286 * 109.46555 * 300.01591 * 6 4 3 8 8 C 1.32309 * 121.60946 * 303.32645 * 7 6 4 9 9 C 1.45205 * 123.00319 * 1.01514 * 8 7 6 10 10 C 1.32942 * 125.19642 * 319.52965 * 9 8 7 11 11 C 1.45207 * 125.19618 * 0.02562 * 10 9 8 12 12 C 1.32293 * 123.02475 * 40.43707 * 11 10 9 13 13 C 1.54263 * 110.32487 * 122.18520 * 2 1 3 14 14 C 1.54379 * 105.06318 * 118.89440 * 13 2 1 15 15 N 1.48565 * 104.59317 * 23.85343 * 14 13 2 16 16 C 1.46898 * 110.99781 * 200.95973 * 15 14 13 17 17 C 1.50703 * 109.46883 * 176.49419 * 16 15 14 18 18 O 1.21291 * 120.00326 * 6.05618 * 17 16 15 19 19 N 1.34780 * 119.99941 * 186.06084 * 17 16 15 20 20 C 1.37094 * 120.00044 * 179.97438 * 19 17 16 21 21 H 1.08005 * 119.99890 * 359.97438 * 20 19 17 22 22 C 1.38949 * 119.99917 * 180.02562 * 20 19 17 23 23 N 1.31412 * 120.00064 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00012 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47292 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47375 * 119.99949 * 24 22 20 27 27 H 1.48503 * 109.47334 * 239.99779 * 24 22 20 28 28 C 1.48564 * 104.22327 * 320.51684 * 15 14 13 29 29 H 1.08991 * 109.46961 * 299.27224 * 1 2 3 30 30 H 1.09002 * 109.46883 * 59.27362 * 1 2 3 31 31 H 1.09002 * 109.46875 * 179.26856 * 1 2 3 32 32 H 0.96997 * 120.00134 * 240.72933 * 3 2 1 33 33 H 1.09007 * 109.46066 * 60.00011 * 6 4 3 34 34 H 1.08003 * 119.20273 * 123.31240 * 7 6 4 35 35 H 1.08003 * 118.51214 * 181.01608 * 8 7 6 36 36 H 1.07993 * 117.40569 * 139.54801 * 9 8 7 37 37 H 1.07993 * 117.40477 * 180.02562 * 10 9 8 38 38 H 1.08003 * 118.48562 * 220.45899 * 11 10 9 39 39 H 1.07995 * 119.20776 * 179.04664 * 12 11 10 40 40 H 1.09001 * 110.32338 * 359.97438 * 13 2 1 41 41 H 1.08997 * 110.32188 * 237.79201 * 13 2 1 42 42 H 1.08998 * 110.40746 * 142.63059 * 14 13 2 43 43 H 1.08993 * 110.41173 * 265.07486 * 14 13 2 44 44 H 1.09009 * 109.47089 * 296.49028 * 16 15 14 45 45 H 1.09000 * 109.47165 * 56.49183 * 16 15 14 46 46 H 0.97002 * 119.99904 * 359.97438 * 19 17 16 47 47 H 0.96999 * 120.00205 * 179.97438 * 23 22 20 48 48 H 1.08998 * 110.40957 * 280.70778 * 28 15 14 49 49 H 1.08996 * 110.40877 * 158.26094 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0399 1.3734 0.0000 4 6 1.7394 2.2037 1.0181 5 8 1.0472 1.8139 1.9346 6 6 2.2644 3.6164 1.0186 7 6 3.7670 3.5922 1.0007 8 6 4.4615 2.9577 1.9311 9 6 3.8401 2.2240 3.0192 10 6 2.7688 2.6219 3.6983 11 6 2.0408 3.8565 3.4647 12 6 1.7887 4.3269 2.2542 13 6 2.0658 -0.7705 1.2243 14 6 2.8806 -1.9423 0.6357 15 7 3.2693 -1.4829 -0.7226 16 6 3.6068 -2.6217 -1.5869 17 6 3.9117 -2.1246 -2.9765 18 8 3.9614 -0.9329 -3.1971 19 7 4.1290 -3.0042 -3.9743 20 6 4.4058 -2.5520 -5.2386 21 1 4.4494 -1.4908 -5.4351 22 6 4.6293 -3.4588 -6.2674 23 7 4.5758 -4.7499 -6.0284 24 14 5.0073 -2.8427 -7.9898 25 1 5.0103 -1.3576 -7.9948 26 1 6.3401 -3.3423 -8.4130 27 1 3.9712 -3.3382 -8.9313 28 6 2.0662 -0.7710 -1.2254 29 1 -0.3633 0.5024 0.8964 30 1 -0.3633 0.5251 -0.8834 31 1 -0.3633 -1.0276 -0.0131 32 1 2.5938 1.6851 -0.7328 33 1 1.8990 4.1399 0.1350 34 1 4.2929 4.1052 0.2090 35 1 5.5399 2.9866 1.8790 36 1 4.2838 1.2801 3.2994 37 1 2.4114 1.9757 4.4862 38 1 1.6893 4.4166 4.3186 39 1 1.2280 5.2441 2.1515 40 1 1.2388 -1.1484 1.8255 41 1 2.7081 -0.1269 1.8252 42 1 3.7670 -2.1309 1.2414 43 1 2.2648 -2.8393 0.5719 44 1 4.4798 -3.1364 -1.1854 45 1 2.7637 -3.3116 -1.6246 46 1 4.0895 -3.9572 -3.7979 47 1 4.7315 -5.3830 -6.7466 48 1 1.3229 -1.4848 -1.5804 49 1 2.3394 -0.0779 -2.0209 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716841980.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:07:12 Heat of formation + Delta-G solvation = -3.193701 kcal Electronic energy + Delta-G solvation = -31105.127275 eV Core-core repulsion = 27033.453484 eV Total energy + Delta-G solvation = -4071.673791 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.76028 -39.25558 -37.91921 -36.83830 -34.50080 -33.86174 -32.74485 -32.38334 -31.31526 -30.94089 -29.46448 -27.38187 -26.53380 -25.39081 -23.92684 -23.65239 -21.75070 -21.26666 -19.49144 -19.16628 -18.64533 -17.87296 -17.59523 -17.24466 -16.62648 -16.34044 -15.60465 -15.26402 -14.96243 -14.79705 -14.52347 -14.35026 -14.20392 -13.79794 -13.64286 -13.46381 -13.11843 -12.95027 -12.59419 -12.47958 -12.29264 -12.17441 -12.03854 -11.94339 -11.86835 -11.55718 -11.39069 -11.19965 -11.01691 -10.92558 -10.75961 -10.66606 -10.36664 -10.26245 -10.25243 -9.73789 -9.52283 -9.30946 -8.91505 -8.47384 -8.24125 -8.06481 -7.96205 -6.44451 -3.85275 1.17762 1.92772 2.72887 3.13094 3.13967 3.24845 3.31504 3.37879 3.87704 4.04648 4.26141 4.54185 4.63233 4.73600 4.77233 4.83845 5.00127 5.01555 5.06605 5.12188 5.20594 5.26597 5.32132 5.34603 5.49394 5.54645 5.72252 5.75772 5.76631 5.81715 5.83796 5.85988 5.87109 5.98930 6.04070 6.18074 6.24658 6.27475 6.37036 6.42109 6.44887 6.65744 6.68379 6.75765 6.77360 7.10892 7.21480 7.52579 7.71816 8.03442 8.40156 8.58596 9.15238 9.51572 10.02793 10.73358 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018423 B = 0.002512 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.450617 B =11142.029817 C =11596.438633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.174 3.826 3 N -0.707 5.707 4 C 0.526 3.474 5 O -0.532 6.532 6 C -0.049 4.049 7 C -0.146 4.146 8 C -0.105 4.105 9 C -0.141 4.141 10 C -0.077 4.077 11 C -0.103 4.103 12 C -0.127 4.127 13 C -0.116 4.116 14 C 0.027 3.973 15 N -0.482 5.482 16 C 0.033 3.967 17 C 0.444 3.556 18 O -0.580 6.580 19 N -0.564 5.564 20 C -0.298 4.298 21 H 0.104 0.896 22 C 0.022 3.978 23 N -0.901 5.901 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.281 1.281 27 H -0.282 1.282 28 C 0.036 3.964 29 H 0.077 0.923 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.404 0.596 33 H 0.104 0.896 34 H 0.122 0.878 35 H 0.118 0.882 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.114 0.886 39 H 0.117 0.883 40 H 0.071 0.929 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.041 0.959 44 H 0.091 0.909 45 H 0.048 0.952 46 H 0.392 0.608 47 H 0.271 0.729 48 H 0.050 0.950 49 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.292 11.929 17.184 21.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.087 3.913 3 N -0.358 5.358 4 C 0.312 3.688 5 O -0.409 6.409 6 C -0.071 4.071 7 C -0.164 4.164 8 C -0.123 4.123 9 C -0.159 4.159 10 C -0.095 4.095 11 C -0.121 4.121 12 C -0.145 4.145 13 C -0.155 4.155 14 C -0.101 4.101 15 N -0.206 5.206 16 C -0.099 4.099 17 C 0.229 3.771 18 O -0.464 6.464 19 N -0.200 5.200 20 C -0.427 4.427 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.207 1.207 27 H -0.208 1.208 28 C -0.092 4.092 29 H 0.096 0.904 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.240 0.760 33 H 0.122 0.878 34 H 0.140 0.860 35 H 0.136 0.864 36 H 0.128 0.872 37 H 0.128 0.872 38 H 0.132 0.868 39 H 0.135 0.865 40 H 0.090 0.910 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.060 0.940 44 H 0.109 0.891 45 H 0.066 0.934 46 H 0.225 0.775 47 H 0.081 0.919 48 H 0.069 0.931 49 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -5.243 12.603 17.549 22.233 hybrid contribution -0.117 -0.993 -1.257 1.607 sum -5.360 11.609 16.292 20.711 Atomic orbital electron populations 1.22181 0.94015 1.02176 1.03143 1.20986 0.93283 0.81506 0.95522 1.46080 1.53191 1.11856 1.24655 1.20278 0.79858 0.86807 0.81868 1.90638 1.38276 1.76801 1.35157 1.19232 0.94362 0.94179 0.99299 1.22898 0.92749 1.01024 0.99775 1.21111 0.99754 0.96822 0.94582 1.21009 0.98053 0.99478 0.97395 1.20974 0.93868 0.95274 0.99400 1.20979 0.98632 0.95399 0.97074 1.22667 0.99615 1.00080 0.92150 1.22624 0.99409 0.96510 0.96928 1.23223 0.98867 0.96500 0.91540 1.65200 1.32880 1.21689 1.00826 1.22096 1.01233 0.92600 0.93926 1.19696 0.84668 0.87165 0.85570 1.90472 1.56705 1.15827 1.83427 1.41881 1.61657 1.08441 1.08040 1.19734 1.44488 0.94583 0.83932 0.87858 1.25267 0.97477 0.94944 1.00297 1.69619 1.49843 1.00832 1.33978 0.85809 0.77920 0.79115 0.81552 1.19213 1.20738 1.20781 1.23465 0.91014 0.98271 0.96475 0.90425 0.92580 0.92058 0.76033 0.87768 0.85968 0.86427 0.87182 0.87204 0.86815 0.86523 0.91010 0.90433 0.90274 0.94034 0.89076 0.93392 0.77496 0.91906 0.93133 0.87351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 8.17 37.16 0.30 -1.67 16 2 C 0.17 2.32 1.01 -130.44 -0.13 2.19 16 3 N -0.71 -8.97 5.00 -46.33 -0.23 -9.20 16 4 C 0.53 6.55 4.65 -10.98 -0.05 6.49 16 5 O -0.53 -7.67 10.96 5.56 0.06 -7.61 16 6 C -0.05 -0.50 2.89 -94.48 -0.27 -0.77 16 7 C -0.15 -1.44 8.89 -36.44 -0.32 -1.76 16 8 C -0.10 -1.10 9.58 -38.74 -0.37 -1.47 16 9 C -0.14 -1.56 8.39 -38.65 -0.32 -1.89 16 10 C -0.08 -0.85 7.35 -38.65 -0.28 -1.13 16 11 C -0.10 -1.05 9.09 -38.74 -0.35 -1.40 16 12 C -0.13 -1.25 8.77 -36.44 -0.32 -1.57 16 13 C -0.12 -1.51 5.49 -25.35 -0.14 -1.65 16 14 C 0.03 0.36 6.49 -2.18 -0.01 0.35 16 15 N -0.48 -7.88 5.18 -231.40 -1.20 -9.08 16 16 C 0.03 0.59 5.39 -4.98 -0.03 0.56 16 17 C 0.44 10.16 7.43 -10.98 -0.08 10.08 16 18 O -0.58 -14.88 14.01 5.55 0.08 -14.80 16 19 N -0.56 -14.00 5.29 -10.96 -0.06 -14.06 16 20 C -0.30 -8.14 9.68 -14.94 -0.14 -8.28 16 21 H 0.10 2.96 7.16 -52.48 -0.38 2.58 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -24.29 13.05 55.50 0.72 -23.56 16 24 Si 0.93 20.76 29.55 -169.99 -5.02 15.73 16 25 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 26 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 27 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 28 C 0.04 0.57 4.78 -2.18 -0.01 0.56 16 29 H 0.08 1.05 6.32 -51.93 -0.33 0.72 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.71 8.12 -51.93 -0.42 0.29 16 32 H 0.40 5.09 8.15 -40.82 -0.33 4.75 16 33 H 0.10 0.87 8.14 -51.92 -0.42 0.45 16 34 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 35 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 36 H 0.11 1.18 8.06 -52.49 -0.42 0.76 16 37 H 0.11 1.16 8.06 -52.49 -0.42 0.74 16 38 H 0.11 0.94 8.06 -52.48 -0.42 0.52 16 39 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 40 H 0.07 0.89 7.71 -51.93 -0.40 0.49 16 41 H 0.08 1.08 7.17 -51.93 -0.37 0.71 16 42 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.04 0.52 7.92 -51.93 -0.41 0.10 16 44 H 0.09 1.49 8.14 -51.92 -0.42 1.06 16 45 H 0.05 0.78 7.98 -51.93 -0.41 0.36 16 46 H 0.39 9.38 7.90 -40.82 -0.32 9.06 16 47 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 48 H 0.05 0.80 7.66 -51.93 -0.40 0.40 16 49 H 0.11 1.99 6.14 -51.93 -0.32 1.67 16 LS Contribution 389.37 15.07 5.87 5.87 Total: -1.00 -31.11 389.37 -9.88 -41.00 By element: Atomic # 1 Polarization: 24.08 SS G_CDS: -7.46 Total: 16.62 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: -2.64 Total: -0.90 kcal Atomic # 7 Polarization: -55.14 SS G_CDS: -0.76 Total: -55.90 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: 0.14 Total: -22.41 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.11 -9.88 -41.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716841980.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.802 kcal (2) G-P(sol) polarization free energy of solvation -31.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds