Wall clock time and date at job start Wed Apr 1 2020 06:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 110.79938 * 2 1 4 4 N 1.46501 * 109.47034 * 303.29190 * 3 2 1 5 5 C 1.36938 * 119.99566 * 179.97438 * 4 3 2 6 6 H 1.07997 * 120.00130 * 0.02562 * 5 4 3 7 7 C 1.38812 * 119.99868 * 179.97438 * 5 4 3 8 8 N 1.31620 * 120.00166 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00089 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46786 * 60.00606 * 9 7 5 11 11 H 1.48497 * 109.46968 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47262 * 300.00450 * 9 7 5 13 13 C 1.54614 * 110.74189 * 123.29165 * 2 1 3 14 14 C 1.54007 * 105.04342 * 96.48562 * 13 2 1 15 15 N 1.47485 * 107.08191 * 358.69964 * 14 13 2 16 16 C 1.34780 * 127.02713 * 205.48047 * 15 14 13 17 17 O 1.21547 * 119.99689 * 179.97438 * 16 15 14 18 18 C 1.47928 * 120.00434 * 359.97438 * 16 15 14 19 19 C 1.39465 * 119.71557 * 179.72412 * 18 16 15 20 20 C 1.38419 * 119.06329 * 179.74206 * 19 18 16 21 21 C 1.38692 * 118.72297 * 0.36104 * 20 19 18 22 22 C 1.39548 * 119.04447 * 359.97438 * 21 20 19 23 23 N 1.31305 * 120.84260 * 359.81021 * 22 21 20 24 24 O 1.35525 * 121.71387 * 180.27786 * 21 20 19 25 25 C 1.42875 * 117.76407 * 342.58525 * 24 21 20 26 26 C 1.53392 * 108.53889 * 49.25142 * 25 24 21 27 27 C 1.50490 * 119.62287 * 179.97438 * 20 19 18 28 28 C 1.48114 * 105.93528 * 25.44416 * 15 14 13 29 29 H 1.09000 * 109.47351 * 296.71102 * 1 2 3 30 30 H 1.09005 * 109.47377 * 56.70313 * 1 2 3 31 31 H 1.08993 * 109.47288 * 176.70734 * 1 2 3 32 32 H 1.08998 * 109.46797 * 63.29297 * 3 2 1 33 33 H 1.08997 * 109.46926 * 183.29219 * 3 2 1 34 34 H 0.96995 * 120.00232 * 359.97438 * 4 3 2 35 35 H 0.96994 * 120.00565 * 179.97438 * 8 7 5 36 36 H 1.09004 * 110.32627 * 337.59495 * 13 2 1 37 37 H 1.09002 * 110.32983 * 215.38167 * 13 2 1 38 38 H 1.09003 * 109.90984 * 118.05902 * 14 13 2 39 39 H 1.08996 * 109.91220 * 239.13956 * 14 13 2 40 40 H 1.07998 * 120.46712 * 359.97162 * 19 18 16 41 41 H 1.08000 * 119.57891 * 179.79736 * 22 21 20 42 42 H 1.09001 * 109.61955 * 289.53849 * 25 24 21 43 43 H 1.08995 * 109.78278 * 169.05943 * 25 24 21 44 44 H 1.09007 * 109.68455 * 175.65143 * 26 25 24 45 45 H 1.08997 * 109.69304 * 55.08430 * 26 25 24 46 46 H 1.09006 * 109.45557 * 282.64688 * 27 20 19 47 47 H 1.09001 * 109.46315 * 42.60748 * 27 20 19 48 48 H 1.08998 * 110.66152 * 79.15179 * 28 15 14 49 49 H 1.08999 * 110.65867 * 202.09913 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0733 1.4304 0.0000 4 7 1.5379 2.1561 -1.1546 5 6 1.8872 3.4636 -1.3634 6 1 2.5577 3.9596 -0.6772 7 6 1.3804 4.1511 -2.4576 8 7 0.5638 3.5465 -3.2941 9 14 1.8563 5.9350 -2.7421 10 1 3.3288 6.0341 -2.9068 11 1 1.1858 6.4366 -3.9684 12 1 1.4323 6.7523 -1.5770 13 6 2.0775 -0.7937 1.2086 14 6 2.3762 -2.2014 0.6602 15 7 1.9871 -2.2038 -0.7624 16 6 1.6221 -3.2695 -1.5022 17 8 1.3242 -3.1242 -2.6717 18 6 1.5839 -4.6162 -0.8912 19 6 1.1997 -5.7140 -1.6608 20 6 1.1740 -6.9686 -1.0768 21 6 1.5250 -7.0891 0.2596 22 6 1.8921 -5.9451 0.9694 23 7 1.9110 -4.7685 0.3868 24 8 1.5263 -8.2886 0.8905 25 6 0.8075 -9.3621 0.2806 26 6 1.2156 -9.4458 -1.1957 27 6 0.7609 -8.1619 -1.8955 28 6 2.0787 -0.7953 -1.2113 29 1 -0.3634 0.4619 0.9180 30 1 -0.3634 0.5642 -0.8590 31 1 -0.3633 -1.0259 -0.0590 32 1 1.7705 1.9340 0.9180 33 1 3.1614 1.4057 -0.0590 34 1 0.9361 1.7105 -1.7710 35 1 0.2093 4.0269 -4.0585 36 1 1.3279 -0.8461 1.9982 37 1 2.9910 -0.3314 1.5828 38 1 3.4402 -2.4185 0.7544 39 1 1.7962 -2.9440 1.2081 40 1 0.9298 -5.5874 -2.6988 41 1 2.1639 -6.0285 2.0113 42 1 -0.2636 -9.1739 0.3543 43 1 1.0497 -10.2996 0.7811 44 1 0.7363 -10.3073 -1.6609 45 1 2.2986 -9.5416 -1.2725 46 1 -0.3239 -8.1713 -2.0017 47 1 1.2217 -8.1029 -2.8815 48 1 3.1145 -0.5225 -1.4132 49 1 1.4603 -0.6320 -2.0939 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716879453.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:21:37 Heat of formation + Delta-G solvation = -18.332225 kcal Electronic energy + Delta-G solvation = -30234.992860 eV Core-core repulsion = 26162.662614 eV Total energy + Delta-G solvation = -4072.330246 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 8.69 seconds Orbital eigenvalues (eV) -41.56645 -40.08151 -38.72749 -37.61555 -35.18358 -34.68865 -32.73470 -32.01694 -31.11203 -30.29362 -29.03479 -27.03638 -26.38167 -25.75639 -24.73039 -23.62519 -23.34797 -21.92083 -21.35537 -19.48376 -18.71131 -18.28903 -17.96369 -17.15999 -16.66008 -16.03382 -15.90477 -15.76252 -15.07253 -14.96443 -14.69195 -14.52603 -14.33096 -14.14058 -13.86193 -13.66963 -13.56279 -13.39776 -13.14157 -12.87891 -12.61638 -12.35366 -12.14600 -12.03339 -11.95490 -11.52384 -11.44706 -11.43095 -11.17743 -10.93987 -10.76136 -10.48066 -10.34899 -10.24004 -10.17247 -9.87408 -9.85206 -9.59678 -9.49872 -8.83843 -8.80950 -8.37968 -6.85042 -5.69394 -2.98063 0.44376 0.79022 2.58327 2.73295 3.04630 3.48758 3.52835 3.54174 3.63821 3.93418 3.99454 4.02891 4.15387 4.27023 4.53478 4.63031 4.68151 4.71881 4.88243 4.90882 4.94517 4.98875 5.12362 5.18367 5.28455 5.36761 5.46027 5.51425 5.55170 5.60501 5.66019 5.70758 5.81033 5.88632 5.99835 6.10296 6.15880 6.20820 6.24973 6.27260 6.41947 6.49705 6.64185 6.74297 6.77399 6.85476 6.94781 7.43514 7.72460 7.75624 8.25062 8.49266 9.60279 10.18497 10.53057 11.53293 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.027787 B = 0.002093 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.438082 B =13373.373582 C =14046.442268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.078 4.078 3 C 0.169 3.831 4 N -0.731 5.731 5 C -0.239 4.239 6 H 0.069 0.931 7 C -0.014 4.014 8 N -0.932 5.932 9 Si 0.907 3.093 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.287 1.287 13 C -0.127 4.127 14 C 0.104 3.896 15 N -0.598 5.598 16 C 0.586 3.414 17 O -0.537 6.537 18 C 0.053 3.947 19 C -0.073 4.073 20 C -0.130 4.130 21 C 0.100 3.900 22 C 0.077 3.923 23 N -0.419 5.419 24 O -0.305 6.305 25 C 0.058 3.942 26 C -0.161 4.161 27 C -0.082 4.082 28 C 0.119 3.881 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.043 0.957 32 H 0.023 0.977 33 H 0.021 0.979 34 H 0.385 0.615 35 H 0.255 0.745 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.062 0.938 39 H 0.100 0.900 40 H 0.152 0.848 41 H 0.171 0.829 42 H 0.068 0.932 43 H 0.112 0.888 44 H 0.090 0.910 45 H 0.080 0.920 46 H 0.087 0.913 47 H 0.091 0.909 48 H 0.076 0.924 49 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.975 -30.098 10.087 31.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.080 4.080 3 C 0.041 3.959 4 N -0.376 5.376 5 C -0.370 4.370 6 H 0.087 0.913 7 C -0.210 4.210 8 N -0.581 5.581 9 Si 0.738 3.262 10 H -0.213 1.213 11 H -0.218 1.218 12 H -0.214 1.214 13 C -0.166 4.166 14 C -0.019 4.019 15 N -0.329 5.329 16 C 0.373 3.627 17 O -0.414 6.414 18 C -0.084 4.084 19 C -0.093 4.093 20 C -0.138 4.138 21 C 0.052 3.948 22 C -0.085 4.085 23 N -0.131 5.131 24 O -0.218 6.218 25 C -0.017 4.017 26 C -0.198 4.198 27 C -0.118 4.118 28 C -0.003 4.003 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.062 0.938 32 H 0.041 0.959 33 H 0.039 0.961 34 H 0.220 0.780 35 H 0.065 0.935 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.080 0.920 39 H 0.118 0.882 40 H 0.169 0.831 41 H 0.188 0.812 42 H 0.086 0.914 43 H 0.130 0.870 44 H 0.109 0.891 45 H 0.099 0.901 46 H 0.105 0.895 47 H 0.110 0.890 48 H 0.094 0.906 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.186 -29.240 10.027 30.934 hybrid contribution -0.237 0.064 -1.026 1.055 sum 0.948 -29.176 9.000 30.547 Atomic orbital electron populations 1.21685 0.93567 1.00560 1.02753 1.21846 0.96494 0.95883 0.93738 1.20632 0.95613 0.87941 0.91720 1.42414 1.56755 1.10837 1.27586 1.19169 1.22833 0.87982 1.07054 0.91279 1.24739 1.00124 0.98273 0.97871 1.69648 1.36045 1.36322 1.16083 0.86274 0.77778 0.85071 0.77081 1.21335 1.21772 1.21363 1.22658 1.01716 0.94437 0.97792 1.22371 1.00440 0.98009 0.81042 1.48600 1.64480 1.07571 1.12253 1.17283 0.77865 0.82412 0.85172 1.90821 1.50100 1.84845 1.15661 1.21045 1.02414 0.94518 0.90458 1.21880 0.95331 0.90337 1.01790 1.20095 1.03913 0.96379 0.93409 1.20020 0.96912 0.86867 0.91007 1.22497 1.00583 0.84783 1.00627 1.67818 1.11081 1.23977 1.10221 1.85961 1.69655 1.17083 1.49051 1.23080 0.96072 0.88971 0.93615 1.22263 1.03131 0.98586 0.95845 1.20504 1.02170 0.90470 0.98700 1.22641 1.01758 0.77620 0.98262 0.92734 0.91209 0.93789 0.95887 0.96102 0.78024 0.93478 0.90743 0.90511 0.91951 0.88249 0.83081 0.81229 0.91361 0.86964 0.89146 0.90133 0.89513 0.89028 0.90566 0.89255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.20 8.33 37.16 0.31 -1.89 16 2 C -0.08 -1.31 0.65 -152.63 -0.10 -1.41 16 3 C 0.17 3.39 5.11 -4.04 -0.02 3.37 16 4 N -0.73 -18.58 5.16 -59.91 -0.31 -18.89 16 5 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 6 H 0.07 1.89 7.83 -52.49 -0.41 1.47 16 7 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 8 N -0.93 -28.76 13.06 55.49 0.72 -28.03 16 9 Si 0.91 22.81 29.55 -169.99 -5.02 17.78 16 10 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 11 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 12 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 13 C -0.13 -1.66 6.09 -25.36 -0.15 -1.82 16 14 C 0.10 1.35 6.06 -2.98 -0.02 1.33 16 15 N -0.60 -9.51 3.19 -170.84 -0.54 -10.05 16 16 C 0.59 9.78 7.87 -12.29 -0.10 9.69 16 17 O -0.54 -10.64 16.53 5.32 0.09 -10.55 16 18 C 0.05 0.71 6.73 -83.02 -0.56 0.15 16 19 C -0.07 -0.83 9.30 -39.06 -0.36 -1.19 16 20 C -0.13 -1.18 5.75 -104.49 -0.60 -1.78 16 21 C 0.10 0.92 6.50 -38.93 -0.25 0.67 16 22 C 0.08 0.74 11.12 -17.29 -0.19 0.55 16 23 N -0.42 -4.98 6.70 -9.61 -0.06 -5.04 16 24 O -0.31 -2.39 10.29 -18.27 -0.19 -2.57 16 25 C 0.06 0.26 7.01 37.36 0.26 0.52 16 26 C -0.16 -0.67 6.20 -26.46 -0.16 -0.83 16 27 C -0.08 -0.48 5.90 -27.92 -0.16 -0.64 16 28 C 0.12 2.11 5.68 -2.13 -0.01 2.10 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.07 1.40 6.69 -51.93 -0.35 1.05 16 31 H 0.04 0.71 8.07 -51.93 -0.42 0.30 16 32 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.02 0.42 8.10 -51.93 -0.42 0.00 16 34 H 0.39 10.37 6.21 -40.82 -0.25 10.11 16 35 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 36 H 0.07 0.88 7.86 -51.93 -0.41 0.47 16 37 H 0.08 0.92 7.85 -51.93 -0.41 0.52 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.10 1.21 5.87 -51.93 -0.30 0.91 16 40 H 0.15 1.68 7.64 -52.49 -0.40 1.28 16 41 H 0.17 1.19 8.06 -52.49 -0.42 0.77 16 42 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.11 0.27 8.14 -51.93 -0.42 -0.16 16 44 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 45 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 46 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.08 1.37 8.02 -51.93 -0.42 0.96 16 49 H 0.09 1.84 7.76 -51.93 -0.40 1.44 16 LS Contribution 391.11 15.07 5.89 5.89 Total: -1.00 -34.18 391.11 -9.35 -43.53 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -7.56 Total: 6.54 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: -2.37 Total: 1.40 kcal Atomic # 7 Polarization: -61.83 SS G_CDS: -0.19 Total: -62.02 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: -0.10 Total: -13.12 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.02 Total: 17.78 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.18 -9.35 -43.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716879453.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.194 kcal (2) G-P(sol) polarization free energy of solvation -34.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.70 seconds