Wall clock time and date at job start Wed Apr 1 2020 03:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.50019 * 2 1 4 4 N 1.46500 * 109.47393 * 300.00453 * 3 2 1 5 5 C 1.34775 * 120.00042 * 179.97438 * 4 3 2 6 6 O 1.21357 * 120.00113 * 0.02562 * 5 4 3 7 7 C 1.49349 * 119.99978 * 179.97438 * 5 4 3 8 8 O 1.21374 * 120.00273 * 0.02562 * 7 5 4 9 9 N 1.34774 * 120.00371 * 180.02562 * 7 5 4 10 10 C 1.39728 * 120.00562 * 184.94458 * 9 7 5 11 11 C 1.38925 * 120.07714 * 212.61086 * 10 9 7 12 12 C 1.38099 * 119.92250 * 179.76755 * 11 10 9 13 13 C 1.38290 * 120.07337 * 0.51071 * 12 11 10 14 14 C 1.38296 * 120.15366 * 359.74719 * 13 12 11 15 15 C 1.38089 * 120.07802 * 359.97438 * 14 13 12 16 16 C 1.53035 * 109.49767 * 120.10300 * 2 1 3 17 17 C 1.53042 * 109.54195 * 58.58481 * 16 2 1 18 18 C 1.53190 * 109.31080 * 61.36295 * 17 16 2 19 19 N 1.46922 * 108.77606 * 305.36723 * 18 17 16 20 20 C 1.36937 * 120.62853 * 233.62970 * 19 18 17 21 21 H 1.08007 * 120.00396 * 27.15630 * 20 19 18 22 22 C 1.38810 * 120.00013 * 207.15558 * 20 19 18 23 23 N 1.31621 * 120.00311 * 16.73363 * 22 20 19 24 24 Si 1.86805 * 120.00150 * 196.73411 * 22 20 19 25 25 H 1.48503 * 109.47156 * 59.99867 * 24 22 20 26 26 H 1.48496 * 109.47297 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47053 * 299.99951 * 24 22 20 28 28 C 1.46918 * 118.74105 * 53.61089 * 19 18 17 29 29 H 1.09001 * 109.47041 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46736 * 300.06458 * 1 2 3 31 31 H 1.08996 * 109.47122 * 60.06011 * 1 2 3 32 32 H 1.09010 * 109.46978 * 60.00245 * 3 2 1 33 33 H 1.09001 * 109.47451 * 180.02562 * 3 2 1 34 34 H 0.96999 * 119.99907 * 359.97438 * 4 3 2 35 35 H 0.97003 * 120.00260 * 4.94531 * 9 7 5 36 36 H 1.08002 * 120.04071 * 0.03106 * 11 10 9 37 37 H 1.07997 * 119.96354 * 180.23810 * 12 11 10 38 38 H 1.08007 * 119.92548 * 179.76550 * 13 12 11 39 39 H 1.08006 * 119.96163 * 179.97438 * 14 13 12 40 40 H 1.08002 * 120.04507 * 179.97438 * 15 14 13 41 41 H 1.09008 * 109.46054 * 178.60549 * 16 2 1 42 42 H 1.08997 * 109.46184 * 298.56254 * 16 2 1 43 43 H 1.09000 * 109.49404 * 301.41221 * 17 16 2 44 44 H 1.09000 * 109.49714 * 181.32034 * 17 16 2 45 45 H 1.09007 * 109.58507 * 185.57759 * 18 17 16 46 46 H 1.08994 * 109.70470 * 65.22978 * 18 17 16 47 47 H 0.96996 * 120.00587 * 180.02562 * 23 22 20 48 48 H 1.09003 * 109.59192 * 186.59866 * 28 19 18 49 49 H 1.09003 * 109.59005 * 66.17415 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0407 1.4422 0.0000 4 7 1.5527 2.1331 -1.1961 5 6 1.8785 3.4234 -1.4091 6 8 2.5766 4.0128 -0.6102 7 6 1.3814 4.1276 -2.6287 8 8 0.6837 3.5381 -3.4279 9 7 1.7076 5.4178 -2.8420 10 6 1.1598 6.1068 -3.9271 11 6 1.8970 7.0942 -4.5688 12 6 1.3542 7.7699 -5.6440 13 6 0.0745 7.4720 -6.0753 14 6 -0.6641 6.4934 -5.4354 15 6 -0.1254 5.8098 -4.3633 16 6 2.0408 -0.7235 1.2480 17 6 1.5030 -2.1563 1.2652 18 6 2.0139 -2.9040 0.0297 19 7 1.6514 -2.1377 -1.1703 20 6 0.9630 -2.7304 -2.1950 21 1 0.3134 -3.5698 -1.9948 22 6 1.1000 -2.2525 -3.4910 23 7 2.1116 -1.4693 -3.8001 24 14 -0.1513 -2.7210 -4.7964 25 1 -1.4982 -2.2526 -4.3818 26 1 0.2178 -2.0853 -6.0867 27 1 -0.1688 -4.1970 -4.9584 28 6 2.0412 -0.7235 -1.2499 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5149 0.8894 31 1 -0.3633 0.5129 -0.8905 32 1 1.6776 1.9562 0.8901 33 1 3.1307 1.4417 -0.0005 34 1 0.9950 1.6619 -1.8348 35 1 2.3228 5.8681 -2.2422 36 1 2.8949 7.3301 -4.2300 37 1 1.9281 8.5349 -6.1458 38 1 -0.3490 8.0046 -6.9141 39 1 -1.6634 6.2635 -5.7746 40 1 -0.7028 5.0460 -3.8637 41 1 3.1306 -0.7449 1.2350 42 1 1.6988 -0.1966 2.1388 43 1 0.4133 -2.1359 1.2534 44 1 1.8480 -2.6636 2.1662 45 1 1.5553 -3.8919 -0.0151 46 1 3.0977 -3.0066 0.0843 47 1 2.2072 -1.1350 -4.7057 48 1 1.6007 -0.2724 -2.1391 49 1 3.1274 -0.6459 -1.2983 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716895789.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:29 Heat of formation + Delta-G solvation = -38.889736 kcal Electronic energy + Delta-G solvation = -30745.433538 eV Core-core repulsion = 26672.211851 eV Total energy + Delta-G solvation = -4073.221687 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.21609 -40.79569 -39.87476 -39.13218 -36.70345 -35.91020 -34.89229 -33.01753 -31.89221 -31.62112 -30.82270 -28.21648 -27.73123 -27.13175 -25.56519 -23.97715 -23.78430 -22.94826 -22.02871 -21.36782 -20.17927 -19.32923 -18.61414 -18.51934 -17.84168 -17.23779 -17.01731 -16.87162 -16.52512 -16.01479 -15.74967 -15.48731 -15.36767 -15.24215 -14.94242 -14.86363 -14.76079 -14.37851 -14.29634 -13.89259 -13.80574 -13.73540 -13.17111 -13.07308 -13.02466 -12.72379 -12.58688 -12.45246 -12.30268 -12.23748 -12.19647 -11.86417 -11.73639 -11.55849 -11.40401 -11.22370 -10.98375 -10.78204 -10.50961 -10.28463 -9.91368 -9.24394 -8.63440 -7.84927 -5.28588 -0.11948 0.42233 0.57173 1.17280 1.44599 1.48090 1.53373 1.98714 2.49453 2.51641 2.84446 3.25360 3.29281 3.59146 3.92076 3.94578 4.01929 4.02016 4.03492 4.27696 4.37198 4.45175 4.49403 4.50163 4.52751 4.53639 4.67835 4.72938 4.80191 4.98497 5.04332 5.06392 5.06910 5.13815 5.19116 5.21960 5.24084 5.31225 5.38212 5.44505 5.47973 5.49371 5.57910 5.62398 5.72341 5.79180 5.83203 6.02540 6.20107 6.40410 6.57013 6.77542 7.17715 7.90356 8.40617 9.19313 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011359 B = 0.003139 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2464.367244 B = 8918.056158 C =10765.294896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.093 4.093 3 C 0.137 3.863 4 N -0.684 5.684 5 C 0.511 3.489 6 O -0.538 6.538 7 C 0.506 3.494 8 O -0.522 6.522 9 N -0.633 5.633 10 C 0.118 3.882 11 C -0.142 4.142 12 C -0.100 4.100 13 C -0.132 4.132 14 C -0.111 4.111 15 C -0.146 4.146 16 C -0.093 4.093 17 C -0.124 4.124 18 C 0.136 3.864 19 N -0.605 5.605 20 C -0.253 4.253 21 H 0.065 0.935 22 C -0.045 4.045 23 N -0.930 5.930 24 Si 0.953 3.047 25 H -0.279 1.279 26 H -0.300 1.300 27 H -0.276 1.276 28 C 0.192 3.808 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.031 0.969 32 H 0.092 0.908 33 H 0.066 0.934 34 H 0.412 0.588 35 H 0.431 0.569 36 H 0.149 0.851 37 H 0.159 0.841 38 H 0.152 0.848 39 H 0.139 0.861 40 H 0.113 0.887 41 H 0.056 0.944 42 H 0.084 0.916 43 H 0.063 0.937 44 H 0.082 0.918 45 H 0.050 0.950 46 H 0.009 0.991 47 H 0.246 0.754 48 H 0.061 0.939 49 H -0.015 1.015 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.273 17.859 4.496 18.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.095 4.095 3 C 0.014 3.986 4 N -0.335 5.335 5 C 0.291 3.709 6 O -0.416 6.416 7 C 0.288 3.712 8 O -0.397 6.397 9 N -0.280 5.280 10 C 0.025 3.975 11 C -0.162 4.162 12 C -0.118 4.118 13 C -0.151 4.151 14 C -0.129 4.129 15 C -0.166 4.166 16 C -0.131 4.131 17 C -0.163 4.163 18 C 0.011 3.989 19 N -0.327 5.327 20 C -0.384 4.384 21 H 0.083 0.917 22 C -0.240 4.240 23 N -0.576 5.576 24 Si 0.782 3.218 25 H -0.205 1.205 26 H -0.227 1.227 27 H -0.202 1.202 28 C 0.066 3.934 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.051 0.949 32 H 0.110 0.890 33 H 0.084 0.916 34 H 0.249 0.751 35 H 0.271 0.729 36 H 0.167 0.833 37 H 0.177 0.823 38 H 0.170 0.830 39 H 0.157 0.843 40 H 0.131 0.869 41 H 0.074 0.926 42 H 0.102 0.898 43 H 0.082 0.918 44 H 0.100 0.900 45 H 0.069 0.931 46 H 0.027 0.973 47 H 0.055 0.945 48 H 0.080 0.920 49 H 0.003 0.997 Dipole moment (debyes) X Y Z Total from point charges -2.228 17.815 4.418 18.489 hybrid contribution -0.292 -0.730 -1.159 1.401 sum -2.521 17.084 3.259 17.574 Atomic orbital electron populations 1.21669 0.93773 1.01988 1.00427 1.21377 0.96924 0.92705 0.98469 1.21604 0.99036 0.91623 0.86353 1.46003 1.50935 1.10565 1.26010 1.19783 0.81703 0.83276 0.86180 1.90725 1.37846 1.66347 1.46697 1.20384 0.81291 0.82939 0.86580 1.90826 1.36957 1.66101 1.45786 1.43046 1.46454 1.10148 1.28361 1.18022 0.93123 0.95721 0.90613 1.21242 1.00454 0.97461 0.97064 1.21390 0.95673 0.99440 0.95294 1.21564 0.95021 0.97705 1.00767 1.21313 1.01023 0.95743 0.94837 1.21242 0.94287 1.01296 0.99813 1.21369 0.99984 0.95725 0.95977 1.21928 1.00963 0.95744 0.97650 1.21116 0.96078 0.94580 0.87164 1.44217 1.65250 1.06484 1.16792 1.19402 1.18009 1.14294 0.86661 0.91700 1.25604 0.98570 1.01182 0.98660 1.70146 1.29663 1.39108 1.18717 0.85547 0.79701 0.77873 0.78631 1.20474 1.22684 1.20174 1.20612 0.93986 0.83876 0.94919 0.92486 0.91273 0.94939 0.89030 0.91569 0.75050 0.72872 0.83281 0.82306 0.83038 0.84303 0.86895 0.92551 0.89752 0.91831 0.89955 0.93142 0.97272 0.94499 0.92041 0.99700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.97 7.81 71.98 0.56 -3.41 16 2 C -0.09 -3.12 0.53 -52.11 -0.03 -3.15 16 3 C 0.14 4.21 4.57 86.38 0.39 4.60 16 4 N -0.68 -22.90 4.99 -464.52 -2.32 -25.21 16 5 C 0.51 16.45 7.89 87.24 0.69 17.14 16 6 O -0.54 -17.62 16.48 -3.27 -0.05 -17.68 16 7 C 0.51 16.00 7.63 87.24 0.67 16.66 16 8 O -0.52 -19.70 14.11 -3.32 -0.05 -19.74 16 9 N -0.63 -15.85 5.33 -304.84 -1.62 -17.47 16 10 C 0.12 2.90 6.29 38.21 0.24 3.14 16 11 C -0.14 -2.60 9.96 22.40 0.22 -2.38 16 12 C -0.10 -1.50 10.04 22.25 0.22 -1.27 16 13 C -0.13 -2.12 10.04 22.30 0.22 -1.90 16 14 C -0.11 -2.30 10.04 22.25 0.22 -2.07 16 15 C -0.15 -3.86 8.66 22.40 0.19 -3.67 16 16 C -0.09 -2.65 4.71 30.62 0.14 -2.50 16 17 C -0.12 -3.73 5.74 30.67 0.18 -3.56 16 18 C 0.14 5.40 6.52 86.36 0.56 5.96 16 19 N -0.60 -29.18 2.44 -699.11 -1.70 -30.88 16 20 C -0.25 -13.64 9.60 84.03 0.81 -12.83 16 21 H 0.07 3.42 7.88 -2.91 -0.02 3.40 16 22 C -0.04 -2.48 4.93 84.86 0.42 -2.06 16 23 N -0.93 -55.02 11.11 21.65 0.24 -54.78 16 24 Si 0.95 45.56 29.59 68.60 2.03 47.59 16 25 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 26 H -0.30 -14.73 7.11 99.48 0.71 -14.03 16 27 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 28 C 0.19 8.79 3.73 86.37 0.32 9.11 16 29 H 0.06 2.07 5.97 -2.39 -0.01 2.06 16 30 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.03 1.13 6.87 -2.39 -0.02 1.12 16 32 H 0.09 2.41 8.14 -2.38 -0.02 2.39 16 33 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.41 15.37 5.69 -92.71 -0.53 14.85 16 35 H 0.43 8.68 8.29 -92.71 -0.77 7.91 16 36 H 0.15 1.98 8.06 -2.91 -0.02 1.96 16 37 H 0.16 1.34 8.06 -2.91 -0.02 1.31 16 38 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16 39 H 0.14 2.37 8.06 -2.91 -0.02 2.35 16 40 H 0.11 3.43 6.37 -2.91 -0.02 3.41 16 41 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 42 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.06 1.94 6.33 -2.39 -0.02 1.92 16 44 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 45 H 0.05 1.98 7.93 -2.38 -0.02 1.96 16 46 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 47 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 48 H 0.06 3.20 4.87 -2.39 -0.01 3.19 16 49 H -0.02 -0.77 8.14 -2.39 -0.02 -0.79 16 Total: -1.00 -68.95 389.93 2.25 -66.70 By element: Atomic # 1 Polarization: 34.00 SS G_CDS: -0.31 Total: 33.69 kcal Atomic # 6 Polarization: 11.75 SS G_CDS: 6.04 Total: 17.79 kcal Atomic # 7 Polarization: -122.94 SS G_CDS: -5.40 Total: -128.34 kcal Atomic # 8 Polarization: -37.32 SS G_CDS: -0.10 Total: -37.42 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -68.95 2.25 -66.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716895789.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.807 kcal (2) G-P(sol) polarization free energy of solvation -68.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds