Wall clock time and date at job start Wed Apr 1 2020 03:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.50044 * 2 1 4 4 N 1.46496 * 109.47010 * 59.99703 * 3 2 1 5 5 C 1.34773 * 119.99978 * 179.97438 * 4 3 2 6 6 O 1.21367 * 119.99954 * 0.02562 * 5 4 3 7 7 C 1.49356 * 120.00384 * 179.97438 * 5 4 3 8 8 O 1.21377 * 119.99722 * 0.02562 * 7 5 4 9 9 N 1.34777 * 119.99993 * 179.97438 * 7 5 4 10 10 C 1.39725 * 119.99626 * 184.45892 * 9 7 5 11 11 C 1.38935 * 120.07911 * 324.58115 * 10 9 7 12 12 C 1.38098 * 119.92073 * 179.71922 * 11 10 9 13 13 C 1.38292 * 120.07581 * 0.57316 * 12 11 10 14 14 C 1.38286 * 120.15451 * 359.67994 * 13 12 11 15 15 C 1.38095 * 120.07858 * 0.04682 * 14 13 12 16 16 C 1.53038 * 109.49692 * 239.93320 * 2 1 3 17 17 C 1.53042 * 109.53823 * 301.35009 * 16 2 1 18 18 C 1.53189 * 109.34100 * 298.68341 * 17 16 2 19 19 N 1.46927 * 108.77781 * 54.61793 * 18 17 16 20 20 C 1.36937 * 120.63158 * 126.41300 * 19 18 17 21 21 H 1.08001 * 119.99321 * 327.99170 * 20 19 18 22 22 C 1.38812 * 119.99967 * 147.98783 * 20 19 18 23 23 N 1.31611 * 119.99446 * 165.78230 * 22 20 19 24 24 Si 1.86790 * 119.99984 * 345.78541 * 22 20 19 25 25 H 1.48502 * 109.47337 * 90.78016 * 24 22 20 26 26 H 1.48498 * 109.47116 * 210.77938 * 24 22 20 27 27 H 1.48501 * 109.47599 * 330.78229 * 24 22 20 28 28 C 1.46933 * 118.73610 * 306.39496 * 19 18 17 29 29 H 1.09005 * 109.47162 * 60.00203 * 1 2 3 30 30 H 1.08996 * 109.47529 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47124 * 300.00075 * 1 2 3 32 32 H 1.09004 * 109.46895 * 300.00108 * 3 2 1 33 33 H 1.09004 * 109.47103 * 179.97438 * 3 2 1 34 34 H 0.97002 * 120.00249 * 0.02562 * 4 3 2 35 35 H 0.96994 * 120.00434 * 4.74784 * 9 7 5 36 36 H 1.07999 * 120.03734 * 0.02562 * 11 10 9 37 37 H 1.08002 * 119.96208 * 180.25823 * 12 11 10 38 38 H 1.07999 * 119.91984 * 179.69874 * 13 12 11 39 39 H 1.08006 * 119.96350 * 180.02562 * 14 13 12 40 40 H 1.07995 * 120.04416 * 179.97438 * 15 14 13 41 41 H 1.08992 * 109.46093 * 61.40435 * 16 2 1 42 42 H 1.09008 * 109.46059 * 181.36426 * 16 2 1 43 43 H 1.09005 * 109.49507 * 178.71834 * 17 16 2 44 44 H 1.09003 * 109.47350 * 58.63868 * 17 16 2 45 45 H 1.09010 * 109.58752 * 294.83449 * 18 17 16 46 46 H 1.08992 * 109.58817 * 174.41042 * 18 17 16 47 47 H 0.97007 * 119.99420 * 179.97438 * 23 22 20 48 48 H 1.08996 * 109.58249 * 293.81541 * 28 19 18 49 49 H 1.09004 * 109.58275 * 173.39033 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0407 1.4422 0.0000 4 7 1.5526 2.1331 1.1961 5 6 1.8793 3.4231 1.4097 6 8 2.5774 4.0125 0.6108 7 6 1.3813 4.1276 2.6288 8 8 0.6827 3.5383 3.4275 9 7 1.7084 5.4175 2.8425 10 6 1.3212 6.0493 4.0271 11 6 0.1018 5.7382 4.6158 12 6 -0.2751 6.3604 5.7896 13 6 0.5543 7.3009 6.3728 14 6 1.7663 7.6168 5.7867 15 6 2.1521 6.9944 4.6159 16 6 2.0407 -0.7228 -1.2485 17 6 1.5042 -2.1560 -1.2657 18 6 2.0151 -2.9038 -0.0303 19 7 1.6521 -2.1380 1.1699 20 6 0.9644 -2.7314 2.1947 21 1 0.2565 -3.5196 1.9847 22 6 1.1773 -2.3200 3.5033 23 7 0.3360 -2.6769 4.4503 24 14 2.6578 -1.2600 3.9198 25 1 2.2869 0.1738 3.8095 26 1 3.1006 -1.5513 5.3070 27 1 3.7630 -1.5594 2.9742 28 6 2.0413 -0.7234 1.2498 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6775 1.9562 -0.8900 33 1 3.1307 1.4417 0.0005 34 1 0.9950 1.6619 1.8348 35 1 2.2090 5.9084 2.1723 36 1 -0.5483 5.0070 4.1585 37 1 -1.2210 6.1160 6.2500 38 1 0.2548 7.7895 7.2882 39 1 2.4119 8.3515 6.2450 40 1 3.0986 7.2419 4.1585 41 1 1.6982 -0.1956 -2.1389 42 1 3.1305 -0.7436 -1.2357 43 1 1.8498 -2.6630 -2.1666 44 1 0.4144 -2.1362 -1.2541 45 1 3.0992 -3.0036 -0.0859 46 1 1.5570 -3.8918 0.0142 47 1 0.4849 -2.3896 5.3648 48 1 3.1273 -0.6455 1.2986 49 1 1.6002 -0.2728 2.1390 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716895790.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:35 Heat of formation + Delta-G solvation = -15.210451 kcal Electronic energy + Delta-G solvation = -30886.593574 eV Core-core repulsion = 26814.398698 eV Total energy + Delta-G solvation = -4072.194876 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.18172 -39.78016 -38.82663 -38.09224 -35.57489 -34.77365 -33.28133 -31.60059 -31.13665 -30.66113 -29.99066 -27.07591 -26.50343 -25.37071 -24.55489 -23.08350 -22.62907 -21.91003 -20.60588 -20.34280 -19.05826 -18.31371 -17.68842 -16.90999 -16.72789 -16.25826 -16.06317 -15.70652 -15.29406 -14.89971 -14.49905 -14.45441 -14.22355 -13.98108 -13.83276 -13.60015 -13.56519 -13.55866 -13.12156 -12.93105 -12.55693 -12.19986 -12.14612 -12.06669 -11.69746 -11.59743 -11.43370 -11.23046 -11.09916 -10.81362 -10.62669 -10.58120 -10.41894 -10.04551 -9.92426 -9.68684 -9.64511 -9.49306 -9.18619 -9.14477 -8.64095 -8.44654 -6.92042 -5.96146 -3.38887 0.84533 1.18229 1.47186 2.18545 3.06190 3.29338 3.45611 3.47793 3.49328 3.60905 4.32617 4.49462 4.66998 4.72977 4.73748 4.94162 5.02941 5.12778 5.16825 5.17685 5.27170 5.33762 5.40374 5.52516 5.66237 5.67260 5.78224 5.84091 5.88141 5.97793 6.01418 6.06322 6.14826 6.22553 6.22622 6.26399 6.31958 6.33203 6.33725 6.51622 6.54832 6.58541 6.67765 6.74582 6.79018 6.83921 6.98455 7.24681 7.58510 7.86824 7.98321 8.33059 8.92075 9.69319 10.08578 11.19815 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013033 B = 0.003185 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.938926 B = 8790.049392 C =10155.679271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.094 4.094 3 C 0.128 3.872 4 N -0.686 5.686 5 C 0.508 3.492 6 O -0.527 6.527 7 C 0.505 3.495 8 O -0.488 6.488 9 N -0.648 5.648 10 C 0.140 3.860 11 C -0.119 4.119 12 C -0.101 4.101 13 C -0.133 4.133 14 C -0.103 4.103 15 C -0.141 4.141 16 C -0.095 4.095 17 C -0.137 4.137 18 C 0.146 3.854 19 N -0.602 5.602 20 C -0.261 4.261 21 H 0.085 0.915 22 C 0.028 3.972 23 N -0.909 5.909 24 Si 0.882 3.118 25 H -0.286 1.286 26 H -0.303 1.303 27 H -0.271 1.271 28 C 0.135 3.865 29 H 0.043 0.957 30 H 0.079 0.921 31 H 0.048 0.952 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.418 0.582 35 H 0.422 0.578 36 H 0.140 0.860 37 H 0.128 0.872 38 H 0.123 0.877 39 H 0.126 0.874 40 H 0.127 0.873 41 H 0.055 0.945 42 H 0.058 0.942 43 H 0.055 0.945 44 H 0.067 0.933 45 H 0.021 0.979 46 H 0.063 0.937 47 H 0.263 0.737 48 H 0.027 0.973 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.102 18.451 -5.251 19.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.097 4.097 3 C 0.004 3.996 4 N -0.340 5.340 5 C 0.288 3.712 6 O -0.404 6.404 7 C 0.287 3.713 8 O -0.361 6.361 9 N -0.296 5.296 10 C 0.047 3.953 11 C -0.139 4.139 12 C -0.120 4.120 13 C -0.152 4.152 14 C -0.122 4.122 15 C -0.161 4.161 16 C -0.133 4.133 17 C -0.176 4.176 18 C 0.021 3.979 19 N -0.325 5.325 20 C -0.389 4.389 21 H 0.103 0.897 22 C -0.171 4.171 23 N -0.552 5.552 24 Si 0.713 3.287 25 H -0.214 1.214 26 H -0.232 1.232 27 H -0.196 1.196 28 C 0.009 3.991 29 H 0.062 0.938 30 H 0.098 0.902 31 H 0.067 0.933 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.257 0.743 35 H 0.260 0.740 36 H 0.158 0.842 37 H 0.145 0.855 38 H 0.141 0.859 39 H 0.144 0.856 40 H 0.145 0.855 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.074 0.926 44 H 0.085 0.915 45 H 0.039 0.961 46 H 0.081 0.919 47 H 0.073 0.927 48 H 0.045 0.955 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.063 18.308 -5.105 19.118 hybrid contribution 0.897 0.665 0.449 1.203 sum 2.960 18.973 -4.656 19.759 Atomic orbital electron populations 1.21775 0.93468 1.03537 1.00065 1.21395 0.97350 0.92017 0.98919 1.21672 0.99370 0.92344 0.86165 1.45984 1.51317 1.10698 1.25983 1.19752 0.81955 0.83381 0.86124 1.90750 1.37307 1.66170 1.46176 1.20443 0.81371 0.82314 0.87212 1.90838 1.34316 1.65608 1.45298 1.43104 1.55927 1.11192 1.19342 1.17777 0.93925 0.95687 0.87960 1.21372 0.94936 1.00590 0.96995 1.21111 0.99952 0.95788 0.95106 1.21191 0.94965 0.98631 1.00426 1.20943 0.96692 0.99584 0.94980 1.20944 0.99173 0.99097 0.96899 1.21352 1.00049 0.96247 0.95643 1.22054 1.01461 0.95320 0.98762 1.20970 0.96583 0.94640 0.85741 1.44253 1.65944 1.04269 1.18064 1.18885 1.16564 1.19177 0.84286 0.89723 1.25360 0.97575 0.98595 0.95580 1.69758 1.36074 1.47954 1.01390 0.86989 0.85171 0.79810 0.76724 1.21395 1.23164 1.19567 1.21465 0.96730 0.85870 0.95056 0.93842 0.90249 0.93290 0.90764 0.90947 0.74324 0.74005 0.84195 0.85452 0.85866 0.85563 0.85494 0.92648 0.92323 0.92636 0.91469 0.96065 0.91861 0.92682 0.95533 0.91219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.12 7.81 37.15 0.29 -1.83 16 2 C -0.09 -1.52 0.53 -154.39 -0.08 -1.60 16 3 C 0.13 1.87 4.57 -4.04 -0.02 1.85 16 4 N -0.69 -10.82 4.99 -60.76 -0.30 -11.12 16 5 C 0.51 7.75 7.89 -11.63 -0.09 7.65 16 6 O -0.53 -8.31 16.48 5.48 0.09 -8.22 16 7 C 0.50 7.50 7.73 -11.63 -0.09 7.41 16 8 O -0.49 -8.56 13.94 5.47 0.08 -8.49 16 9 N -0.65 -7.76 5.32 -10.29 -0.05 -7.81 16 10 C 0.14 1.68 6.29 -83.74 -0.53 1.15 16 11 C -0.12 -1.50 8.69 -39.37 -0.34 -1.85 16 12 C -0.10 -1.06 10.04 -39.61 -0.40 -1.46 16 13 C -0.13 -1.21 10.04 -39.54 -0.40 -1.61 16 14 C -0.10 -0.91 10.04 -39.62 -0.40 -1.30 16 15 C -0.14 -1.38 9.97 -39.38 -0.39 -1.77 16 16 C -0.09 -1.34 4.71 -26.69 -0.13 -1.47 16 17 C -0.14 -2.06 5.74 -26.61 -0.15 -2.21 16 18 C 0.15 2.74 6.52 -3.71 -0.02 2.72 16 19 N -0.60 -13.59 2.17 -172.31 -0.37 -13.96 16 20 C -0.26 -7.05 10.04 -15.06 -0.15 -7.20 16 21 H 0.09 2.46 8.06 -52.49 -0.42 2.04 16 22 C 0.03 0.81 5.32 -17.43 -0.09 0.72 16 23 N -0.91 -27.69 13.97 55.49 0.78 -26.91 16 24 Si 0.88 22.61 24.29 -169.99 -4.13 18.48 16 25 H -0.29 -7.13 6.63 56.52 0.37 -6.76 16 26 H -0.30 -8.03 7.11 56.52 0.40 -7.63 16 27 H -0.27 -6.79 6.40 56.52 0.36 -6.43 16 28 C 0.13 2.78 2.58 -3.71 -0.01 2.77 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 1.44 5.97 -51.93 -0.31 1.13 16 31 H 0.05 0.83 6.86 -51.93 -0.36 0.47 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.42 7.17 5.69 -40.82 -0.23 6.94 16 35 H 0.42 4.09 8.30 -40.82 -0.34 3.75 16 36 H 0.14 1.95 6.25 -52.49 -0.33 1.62 16 37 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 38 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 39 H 0.13 0.78 8.06 -52.48 -0.42 0.36 16 40 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 41 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 43 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.07 1.05 6.34 -51.93 -0.33 0.72 16 45 H 0.02 0.39 8.14 -51.92 -0.42 -0.03 16 46 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 47 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 48 H 0.03 0.57 6.83 -51.93 -0.35 0.21 16 49 H 0.07 1.59 3.54 -51.93 -0.18 1.41 16 LS Contribution 383.10 15.07 5.77 5.77 Total: -1.00 -32.17 383.10 -8.27 -40.44 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: -7.12 Total: 9.86 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: -3.00 Total: 1.97 kcal Atomic # 7 Polarization: -59.85 SS G_CDS: 0.04 Total: -59.81 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: 0.17 Total: -16.71 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -4.13 Total: 18.48 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.17 -8.27 -40.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716895790.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.226 kcal (2) G-P(sol) polarization free energy of solvation -32.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds