Wall clock time and date at job start Wed Apr 1 2020 03:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.50044 * 2 1 4 4 N 1.46496 * 109.47010 * 59.99703 * 3 2 1 5 5 C 1.34773 * 119.99978 * 179.97438 * 4 3 2 6 6 O 1.21367 * 119.99954 * 0.02562 * 5 4 3 7 7 C 1.49356 * 120.00384 * 179.97438 * 5 4 3 8 8 O 1.21377 * 119.99722 * 0.02562 * 7 5 4 9 9 N 1.34777 * 119.99993 * 179.97438 * 7 5 4 10 10 C 1.39725 * 119.99626 * 184.45892 * 9 7 5 11 11 C 1.38935 * 120.07911 * 324.58115 * 10 9 7 12 12 C 1.38098 * 119.92073 * 179.71922 * 11 10 9 13 13 C 1.38292 * 120.07581 * 0.57316 * 12 11 10 14 14 C 1.38286 * 120.15451 * 359.67994 * 13 12 11 15 15 C 1.38095 * 120.07858 * 0.04682 * 14 13 12 16 16 C 1.53038 * 109.49692 * 239.93320 * 2 1 3 17 17 C 1.53042 * 109.53823 * 301.35009 * 16 2 1 18 18 C 1.53189 * 109.34100 * 298.68341 * 17 16 2 19 19 N 1.46927 * 108.77781 * 54.61793 * 18 17 16 20 20 C 1.36937 * 120.63158 * 126.41300 * 19 18 17 21 21 H 1.08001 * 119.99321 * 327.99170 * 20 19 18 22 22 C 1.38812 * 119.99967 * 147.98783 * 20 19 18 23 23 N 1.31611 * 119.99446 * 165.78230 * 22 20 19 24 24 Si 1.86790 * 119.99984 * 345.78541 * 22 20 19 25 25 H 1.48502 * 109.47337 * 90.78016 * 24 22 20 26 26 H 1.48498 * 109.47116 * 210.77938 * 24 22 20 27 27 H 1.48501 * 109.47599 * 330.78229 * 24 22 20 28 28 C 1.46933 * 118.73610 * 306.39496 * 19 18 17 29 29 H 1.09005 * 109.47162 * 60.00203 * 1 2 3 30 30 H 1.08996 * 109.47529 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47124 * 300.00075 * 1 2 3 32 32 H 1.09004 * 109.46895 * 300.00108 * 3 2 1 33 33 H 1.09004 * 109.47103 * 179.97438 * 3 2 1 34 34 H 0.97002 * 120.00249 * 0.02562 * 4 3 2 35 35 H 0.96994 * 120.00434 * 4.74784 * 9 7 5 36 36 H 1.07999 * 120.03734 * 0.02562 * 11 10 9 37 37 H 1.08002 * 119.96208 * 180.25823 * 12 11 10 38 38 H 1.07999 * 119.91984 * 179.69874 * 13 12 11 39 39 H 1.08006 * 119.96350 * 180.02562 * 14 13 12 40 40 H 1.07995 * 120.04416 * 179.97438 * 15 14 13 41 41 H 1.08992 * 109.46093 * 61.40435 * 16 2 1 42 42 H 1.09008 * 109.46059 * 181.36426 * 16 2 1 43 43 H 1.09005 * 109.49507 * 178.71834 * 17 16 2 44 44 H 1.09003 * 109.47350 * 58.63868 * 17 16 2 45 45 H 1.09010 * 109.58752 * 294.83449 * 18 17 16 46 46 H 1.08992 * 109.58817 * 174.41042 * 18 17 16 47 47 H 0.97007 * 119.99420 * 179.97438 * 23 22 20 48 48 H 1.08996 * 109.58249 * 293.81541 * 28 19 18 49 49 H 1.09004 * 109.58275 * 173.39033 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0407 1.4422 0.0000 4 7 1.5526 2.1331 1.1961 5 6 1.8793 3.4231 1.4097 6 8 2.5774 4.0125 0.6108 7 6 1.3813 4.1276 2.6288 8 8 0.6827 3.5383 3.4275 9 7 1.7084 5.4175 2.8425 10 6 1.3212 6.0493 4.0271 11 6 0.1018 5.7382 4.6158 12 6 -0.2751 6.3604 5.7896 13 6 0.5543 7.3009 6.3728 14 6 1.7663 7.6168 5.7867 15 6 2.1521 6.9944 4.6159 16 6 2.0407 -0.7228 -1.2485 17 6 1.5042 -2.1560 -1.2657 18 6 2.0151 -2.9038 -0.0303 19 7 1.6521 -2.1380 1.1699 20 6 0.9644 -2.7314 2.1947 21 1 0.2565 -3.5196 1.9847 22 6 1.1773 -2.3200 3.5033 23 7 0.3360 -2.6769 4.4503 24 14 2.6578 -1.2600 3.9198 25 1 2.2869 0.1738 3.8095 26 1 3.1006 -1.5513 5.3070 27 1 3.7630 -1.5594 2.9742 28 6 2.0413 -0.7234 1.2498 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6775 1.9562 -0.8900 33 1 3.1307 1.4417 0.0005 34 1 0.9950 1.6619 1.8348 35 1 2.2090 5.9084 2.1723 36 1 -0.5483 5.0070 4.1585 37 1 -1.2210 6.1160 6.2500 38 1 0.2548 7.7895 7.2882 39 1 2.4119 8.3515 6.2450 40 1 3.0986 7.2419 4.1585 41 1 1.6982 -0.1956 -2.1389 42 1 3.1305 -0.7436 -1.2357 43 1 1.8498 -2.6630 -2.1666 44 1 0.4144 -2.1362 -1.2541 45 1 3.0992 -3.0036 -0.0859 46 1 1.5570 -3.8918 0.0142 47 1 0.4849 -2.3896 5.3648 48 1 3.1273 -0.6455 1.2986 49 1 1.6002 -0.2728 2.1390 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716895790.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:34 Heat of formation + Delta-G solvation = -36.930658 kcal Electronic energy + Delta-G solvation = -30887.535433 eV Core-core repulsion = 26814.398698 eV Total energy + Delta-G solvation = -4073.136735 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.28226 -40.93554 -40.02656 -39.19600 -36.81883 -35.98311 -34.92763 -33.24711 -32.30040 -31.90895 -30.86982 -28.29763 -27.89852 -27.16671 -25.70400 -24.20343 -23.82940 -22.96094 -22.01959 -21.46244 -20.29809 -19.67826 -18.66432 -18.62821 -17.90352 -17.37286 -17.28244 -16.99658 -16.57095 -16.19558 -15.86972 -15.56119 -15.46679 -15.29533 -15.14690 -15.02464 -14.85805 -14.66046 -14.34856 -13.99123 -13.87867 -13.76555 -13.57537 -13.26321 -13.14894 -12.90277 -12.64942 -12.47933 -12.35756 -12.28320 -12.14363 -11.99891 -11.60238 -11.54685 -11.53624 -11.34049 -11.09363 -10.85050 -10.68392 -10.39068 -9.93382 -9.30984 -8.82637 -8.18426 -5.54434 -0.15618 0.40019 0.49262 1.11239 1.22916 1.32696 1.40536 1.91463 2.35546 2.42443 2.80852 3.06193 3.18504 3.30256 3.71523 3.83866 3.84908 3.93101 4.00475 4.25831 4.30325 4.34690 4.41936 4.43709 4.47881 4.51857 4.52748 4.63742 4.70736 4.76199 4.87035 4.95416 5.00253 5.05063 5.06722 5.15077 5.16199 5.19615 5.22357 5.30803 5.35209 5.44093 5.45586 5.55770 5.68052 5.76061 5.90142 5.99781 6.10721 6.13956 6.50096 6.70309 6.93238 7.61886 8.04240 9.01629 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013033 B = 0.003185 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.938926 B = 8790.049392 C =10155.679271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.085 4.085 3 C 0.130 3.870 4 N -0.694 5.694 5 C 0.513 3.487 6 O -0.530 6.530 7 C 0.502 3.498 8 O -0.525 6.525 9 N -0.631 5.631 10 C 0.114 3.886 11 C -0.145 4.145 12 C -0.114 4.114 13 C -0.130 4.130 14 C -0.101 4.101 15 C -0.139 4.139 16 C -0.092 4.092 17 C -0.128 4.128 18 C 0.138 3.862 19 N -0.615 5.615 20 C -0.236 4.236 21 H 0.054 0.946 22 C -0.027 4.027 23 N -0.958 5.958 24 Si 0.939 3.061 25 H -0.281 1.281 26 H -0.317 1.317 27 H -0.259 1.259 28 C 0.132 3.868 29 H 0.074 0.926 30 H 0.054 0.946 31 H 0.031 0.969 32 H 0.099 0.901 33 H 0.078 0.922 34 H 0.410 0.590 35 H 0.433 0.567 36 H 0.116 0.884 37 H 0.138 0.862 38 H 0.152 0.848 39 H 0.160 0.840 40 H 0.151 0.849 41 H 0.090 0.910 42 H 0.068 0.932 43 H 0.089 0.911 44 H 0.059 0.941 45 H 0.031 0.969 46 H 0.052 0.948 47 H 0.259 0.741 48 H 0.025 0.975 49 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.077 21.211 -7.226 22.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.087 4.087 3 C 0.008 3.992 4 N -0.346 5.346 5 C 0.293 3.707 6 O -0.408 6.408 7 C 0.284 3.716 8 O -0.400 6.400 9 N -0.278 5.278 10 C 0.020 3.980 11 C -0.165 4.165 12 C -0.132 4.132 13 C -0.148 4.148 14 C -0.120 4.120 15 C -0.159 4.159 16 C -0.130 4.130 17 C -0.166 4.166 18 C 0.014 3.986 19 N -0.339 5.339 20 C -0.366 4.366 21 H 0.071 0.929 22 C -0.222 4.222 23 N -0.604 5.604 24 Si 0.769 3.231 25 H -0.208 1.208 26 H -0.247 1.247 27 H -0.184 1.184 28 C 0.007 3.993 29 H 0.093 0.907 30 H 0.073 0.927 31 H 0.050 0.950 32 H 0.117 0.883 33 H 0.096 0.904 34 H 0.247 0.753 35 H 0.273 0.727 36 H 0.134 0.866 37 H 0.156 0.844 38 H 0.169 0.831 39 H 0.177 0.823 40 H 0.168 0.832 41 H 0.108 0.892 42 H 0.087 0.913 43 H 0.107 0.893 44 H 0.078 0.922 45 H 0.049 0.951 46 H 0.071 0.929 47 H 0.068 0.932 48 H 0.043 0.957 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 4.083 21.116 -7.158 22.667 hybrid contribution 0.239 -0.180 1.035 1.078 sum 4.321 20.936 -6.122 22.237 Atomic orbital electron populations 1.21715 0.93710 1.02133 1.00799 1.21261 0.97003 0.92793 0.97622 1.21742 0.99672 0.91211 0.86584 1.46102 1.51272 1.10945 1.26243 1.19738 0.81699 0.83204 0.86074 1.90739 1.37538 1.66199 1.46312 1.20466 0.81192 0.83076 0.86845 1.90832 1.36153 1.66582 1.46459 1.42995 1.54921 1.10199 1.19699 1.18019 0.94520 0.97011 0.88407 1.21360 0.95569 1.01228 0.98337 1.21337 1.00967 0.96257 0.94648 1.21576 0.94659 0.97565 1.01015 1.21396 0.96808 0.99455 0.94297 1.21266 0.99572 0.97915 0.97106 1.21392 1.00653 0.95367 0.95552 1.21951 1.00985 0.95904 0.97784 1.21194 0.97164 0.94489 0.85799 1.44377 1.65784 1.05660 1.18104 1.18812 1.15001 1.17388 0.85426 0.92866 1.25887 0.99866 1.00746 0.95732 1.69889 1.38118 1.50807 1.01596 0.86063 0.82614 0.78746 0.75632 1.20828 1.24689 1.18356 1.21442 0.96338 0.84945 0.96595 0.90682 0.92653 0.95016 0.88281 0.90386 0.75312 0.72735 0.86623 0.84425 0.83067 0.82258 0.83168 0.89173 0.91303 0.89305 0.92216 0.95075 0.92931 0.93200 0.95713 0.93912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.92 7.81 71.98 0.56 -3.36 16 2 C -0.08 -2.53 0.53 -52.11 -0.03 -2.56 16 3 C 0.13 3.45 4.57 86.38 0.39 3.85 16 4 N -0.69 -21.25 4.99 -464.50 -2.32 -23.57 16 5 C 0.51 15.20 7.89 87.24 0.69 15.89 16 6 O -0.53 -15.72 16.48 -3.30 -0.05 -15.77 16 7 C 0.50 15.09 7.73 87.24 0.67 15.77 16 8 O -0.53 -19.29 13.94 -3.33 -0.05 -19.34 16 9 N -0.63 -14.85 5.32 -304.82 -1.62 -16.47 16 10 C 0.11 2.68 6.29 38.22 0.24 2.92 16 11 C -0.14 -3.78 8.69 22.40 0.19 -3.59 16 12 C -0.11 -2.36 10.04 22.25 0.22 -2.13 16 13 C -0.13 -2.06 10.04 22.29 0.22 -1.83 16 14 C -0.10 -1.47 10.04 22.25 0.22 -1.24 16 15 C -0.14 -2.41 9.97 22.40 0.22 -2.19 16 16 C -0.09 -2.21 4.71 30.62 0.14 -2.07 16 17 C -0.13 -3.43 5.74 30.67 0.18 -3.25 16 18 C 0.14 4.98 6.52 86.36 0.56 5.54 16 19 N -0.62 -27.73 2.17 -699.07 -1.52 -29.25 16 20 C -0.24 -13.20 10.04 84.03 0.84 -12.36 16 21 H 0.05 3.26 8.06 -2.91 -0.02 3.24 16 22 C -0.03 -1.62 5.32 84.86 0.45 -1.17 16 23 N -0.96 -61.14 13.97 21.65 0.30 -60.84 16 24 Si 0.94 48.34 24.29 68.60 1.67 50.00 16 25 H -0.28 -14.07 6.63 99.48 0.66 -13.41 16 26 H -0.32 -16.91 7.11 99.48 0.71 -16.20 16 27 H -0.26 -12.64 6.40 99.48 0.64 -12.01 16 28 C 0.13 5.33 2.58 86.36 0.22 5.56 16 29 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 30 H 0.05 1.98 5.97 -2.39 -0.01 1.97 16 31 H 0.03 1.07 6.86 -2.39 -0.02 1.05 16 32 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.41 14.27 5.69 -92.71 -0.53 13.74 16 35 H 0.43 7.88 8.30 -92.71 -0.77 7.11 16 36 H 0.12 3.51 6.25 -2.91 -0.02 3.50 16 37 H 0.14 2.40 8.06 -2.91 -0.02 2.38 16 38 H 0.15 1.51 8.06 -2.91 -0.02 1.48 16 39 H 0.16 1.25 8.06 -2.91 -0.02 1.23 16 40 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 41 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 43 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 44 H 0.06 1.72 6.34 -2.39 -0.02 1.71 16 45 H 0.03 1.08 8.14 -2.38 -0.02 1.06 16 46 H 0.05 1.97 7.93 -2.39 -0.02 1.95 16 47 H 0.26 15.96 8.31 -92.70 -0.77 15.19 16 48 H 0.03 1.02 6.83 -2.39 -0.02 1.00 16 49 H 0.04 1.97 3.54 -2.38 -0.01 1.96 16 Total: -1.00 -73.69 383.10 2.01 -71.68 By element: Atomic # 1 Polarization: 30.20 SS G_CDS: -0.43 Total: 29.78 kcal Atomic # 6 Polarization: 7.75 SS G_CDS: 6.02 Total: 13.77 kcal Atomic # 7 Polarization: -124.98 SS G_CDS: -5.15 Total: -130.13 kcal Atomic # 8 Polarization: -35.01 SS G_CDS: -0.10 Total: -35.11 kcal Atomic # 14 Polarization: 48.34 SS G_CDS: 1.67 Total: 50.00 kcal Total: -73.69 2.01 -71.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716895790.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.754 kcal (2) G-P(sol) polarization free energy of solvation -73.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds