Wall clock time and date at job start Wed Apr 1 2020 06:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 110.88601 * 2 1 4 4 N 1.46501 * 109.47365 * 303.87801 * 3 2 1 5 5 C 1.36938 * 120.00346 * 180.02562 * 4 3 2 6 6 H 1.07993 * 119.99844 * 359.97438 * 5 4 3 7 7 C 1.38807 * 119.99893 * 180.02562 * 5 4 3 8 8 N 1.31623 * 119.99869 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 120.00415 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.47131 * 89.99906 * 9 7 5 11 11 H 1.48504 * 109.47275 * 210.00324 * 9 7 5 12 12 H 1.48504 * 109.46826 * 329.99839 * 9 7 5 13 13 C 1.55156 * 110.99969 * 123.87696 * 2 1 3 14 14 C 1.54324 * 102.94204 * 82.57539 * 13 2 1 15 15 N 1.47024 * 107.27307 * 22.19025 * 14 13 2 16 16 C 1.34777 * 125.65169 * 181.02498 * 15 14 13 17 17 O 1.21512 * 119.99712 * 184.98245 * 16 15 14 18 18 C 1.48157 * 119.99962 * 4.98412 * 16 15 14 19 19 C 1.39613 * 120.89340 * 352.46265 * 18 16 15 20 20 C 1.38850 * 118.95128 * 179.97438 * 19 18 16 21 21 O 1.35687 * 119.62147 * 180.29579 * 20 19 18 22 22 N 1.32201 * 120.75383 * 0.02562 * 20 19 18 23 23 C 1.31877 * 121.97418 * 0.02562 * 22 20 19 24 24 C 1.50698 * 119.51458 * 179.97438 * 23 22 20 25 25 C 1.53000 * 117.50079 * 163.75129 * 24 23 22 26 26 C 1.52992 * 117.50035 * 95.08575 * 24 23 22 27 27 C 1.38022 * 120.97478 * 359.97438 * 23 22 20 28 28 C 1.47428 * 108.69842 * 1.28600 * 15 14 13 29 29 H 1.08998 * 109.47325 * 296.12304 * 1 2 3 30 30 H 1.09002 * 109.46919 * 56.11961 * 1 2 3 31 31 H 1.09001 * 109.47388 * 176.11715 * 1 2 3 32 32 H 1.09001 * 109.47354 * 63.87638 * 3 2 1 33 33 H 1.08997 * 109.47354 * 183.87835 * 3 2 1 34 34 H 0.97008 * 119.99503 * 0.02562 * 4 3 2 35 35 H 0.96998 * 119.99682 * 180.02562 * 8 7 5 36 36 H 1.08995 * 110.72216 * 324.21319 * 13 2 1 37 37 H 1.09001 * 110.87087 * 201.00767 * 13 2 1 38 38 H 1.08999 * 109.88407 * 262.77259 * 14 13 2 39 39 H 1.08998 * 110.01645 * 141.67662 * 14 13 2 40 40 H 1.08001 * 120.52135 * 0.02562 * 19 18 16 41 41 H 0.96703 * 113.99708 * 269.72260 * 21 20 19 42 42 H 1.09009 * 115.54745 * 309.42064 * 24 23 22 43 43 H 1.09002 * 117.49764 * 359.97438 * 25 24 23 44 44 H 1.09000 * 117.50008 * 145.02321 * 25 24 23 45 45 H 1.08998 * 117.50224 * 214.98060 * 26 24 23 46 46 H 1.09003 * 117.49797 * 0.02562 * 26 24 23 47 47 H 1.07994 * 120.43485 * 179.97438 * 27 23 22 48 48 H 1.08999 * 110.36705 * 94.48620 * 28 15 14 49 49 H 1.09004 * 110.36604 * 216.80580 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0755 1.4294 0.0000 4 7 1.5303 2.1602 -1.1467 5 6 1.8803 3.4677 -1.3548 6 1 2.5580 3.9602 -0.6733 7 6 1.3633 4.1601 -2.4410 8 7 1.7001 5.4167 -2.6413 9 14 0.1905 3.3084 -3.6194 10 1 -1.2059 3.4971 -3.1507 11 1 0.3406 3.8932 -4.9762 12 1 0.5046 1.8578 -3.6681 13 6 2.0860 -0.8074 1.2026 14 6 2.0285 -2.2643 0.6970 15 7 2.0139 -2.2162 -0.7724 16 6 1.9471 -3.2836 -1.5927 17 8 2.0328 -3.1318 -2.7952 18 6 1.7693 -4.6417 -1.0281 19 6 1.8249 -4.8581 0.3500 20 6 1.6522 -6.1475 0.8354 21 8 1.6976 -6.3723 2.1728 22 7 1.4387 -7.1577 0.0098 23 6 1.3809 -6.9913 -1.2971 24 6 1.1353 -8.1823 -2.1871 25 6 0.7004 -7.9096 -3.6284 26 6 -0.3073 -8.4587 -2.6153 27 6 1.5421 -5.7423 -1.8620 28 6 2.0908 -0.8074 -1.2000 29 1 -0.3634 0.4525 0.9227 30 1 -0.3633 0.5729 -0.8532 31 1 -0.3634 -1.0253 -0.0696 32 1 1.7823 1.9303 0.9227 33 1 3.1629 1.4034 -0.0695 34 1 0.9212 1.7179 -1.7586 35 1 1.3385 5.9007 -3.4001 36 1 1.4522 -0.6784 2.0799 37 1 3.1128 -0.5164 1.4242 38 1 1.1218 -2.7475 1.0610 39 1 2.9048 -2.8136 1.0411 40 1 1.9986 -4.0355 1.0278 41 1 2.5813 -6.5781 2.5072 42 1 1.7814 -9.0424 -2.0105 43 1 0.5916 -6.8686 -3.9328 44 1 1.0600 -8.5904 -4.4000 45 1 -0.6102 -9.5004 -2.7208 46 1 -1.0786 -7.7787 -2.2536 47 1 1.4935 -5.6160 -2.9334 48 1 3.1253 -0.5271 -1.3985 49 1 1.4764 -0.6457 -2.0857 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733426009.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:25:42 Heat of formation + Delta-G solvation = 30.133223 kcal Electronic energy + Delta-G solvation = -30329.172582 eV Core-core repulsion = 26258.943955 eV Total energy + Delta-G solvation = -4070.228627 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.44656 -40.16460 -38.38839 -38.13275 -36.55109 -35.25788 -33.44793 -32.45717 -30.91054 -30.55883 -29.50968 -27.17603 -26.28173 -25.45460 -24.19524 -23.43382 -22.63558 -21.96670 -21.60630 -20.11518 -19.20590 -18.66500 -17.74604 -17.50875 -17.03468 -16.40976 -16.36170 -15.85131 -15.53967 -15.35694 -14.86907 -14.61462 -14.49619 -14.23711 -13.90568 -13.65317 -13.26271 -13.17682 -13.04909 -12.75966 -12.43096 -12.28355 -12.26348 -12.20898 -11.92002 -11.88821 -11.60972 -11.43602 -11.13836 -10.95146 -10.87947 -10.72462 -10.59061 -10.53888 -10.32070 -10.22291 -10.10720 -9.71119 -9.59118 -9.22613 -8.93340 -8.82440 -7.26690 -5.79151 -3.15099 0.29510 0.50738 2.48497 2.63101 2.94339 3.30617 3.36601 3.39740 3.45189 3.46199 3.87869 4.00268 4.30762 4.40645 4.43291 4.47366 4.57458 4.61258 4.62440 4.67007 4.71629 4.94424 5.01996 5.06368 5.13062 5.22100 5.22793 5.29991 5.41852 5.43532 5.52435 5.58413 5.60022 5.68086 5.69836 5.71542 5.79422 5.83527 5.92687 5.96891 6.01492 6.10954 6.24315 6.41551 6.54699 6.60904 7.01326 7.23831 7.45447 7.84816 7.95876 8.39626 9.18002 9.90465 10.09266 11.39128 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015672 B = 0.002587 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.242058 B =10820.749678 C =12130.864486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.082 4.082 3 C 0.175 3.825 4 N -0.755 5.755 5 C -0.245 4.245 6 H 0.091 0.909 7 C 0.006 3.994 8 N -0.933 5.933 9 Si 0.880 3.120 10 H -0.284 1.284 11 H -0.290 1.290 12 H -0.277 1.277 13 C -0.122 4.122 14 C 0.088 3.912 15 N -0.605 5.605 16 C 0.569 3.431 17 O -0.524 6.524 18 C -0.060 4.060 19 C -0.194 4.194 20 C 0.312 3.688 21 O -0.478 6.478 22 N -0.485 5.485 23 C 0.180 3.820 24 C -0.112 4.112 25 C -0.171 4.171 26 C -0.160 4.160 27 C -0.124 4.124 28 C 0.118 3.882 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.047 0.953 32 H 0.035 0.965 33 H 0.031 0.969 34 H 0.361 0.639 35 H 0.260 0.740 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.177 0.823 41 H 0.402 0.598 42 H 0.126 0.874 43 H 0.103 0.897 44 H 0.105 0.895 45 H 0.103 0.897 46 H 0.096 0.904 47 H 0.153 0.847 48 H 0.079 0.921 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.239 -28.747 8.208 29.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.084 4.084 3 C 0.047 3.953 4 N -0.401 5.401 5 C -0.374 4.374 6 H 0.108 0.892 7 C -0.190 4.190 8 N -0.581 5.581 9 Si 0.710 3.290 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.203 1.203 13 C -0.161 4.161 14 C -0.034 4.034 15 N -0.338 5.338 16 C 0.357 3.643 17 O -0.401 6.401 18 C -0.071 4.071 19 C -0.214 4.214 20 C 0.133 3.867 21 O -0.285 6.285 22 N -0.205 5.205 23 C 0.043 3.957 24 C -0.130 4.130 25 C -0.209 4.209 26 C -0.197 4.197 27 C -0.145 4.145 28 C -0.003 4.003 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.053 0.947 33 H 0.049 0.951 34 H 0.195 0.805 35 H 0.070 0.930 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.194 0.806 41 H 0.259 0.741 42 H 0.143 0.857 43 H 0.121 0.879 44 H 0.124 0.876 45 H 0.121 0.879 46 H 0.114 0.886 47 H 0.171 0.829 48 H 0.098 0.902 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.298 -29.166 7.924 30.224 hybrid contribution -0.227 0.175 -1.009 1.049 sum -0.525 -28.991 6.915 29.809 Atomic orbital electron populations 1.21706 0.93328 1.00935 1.03029 1.22072 0.96502 0.96270 0.93517 1.20552 0.96079 0.87089 0.91582 1.42756 1.56574 1.11589 1.29178 1.19024 1.23572 0.85840 1.09012 0.89156 1.24655 1.00113 0.95770 0.98415 1.69697 1.48067 1.08957 1.31347 0.86623 0.81730 0.79120 0.81526 1.21024 1.21598 1.20273 1.22776 1.02892 0.92151 0.98252 1.22580 1.01358 0.98991 0.80463 1.48391 1.71626 1.06952 1.06831 1.17737 0.77708 0.83071 0.85796 1.90819 1.49853 1.85379 1.14005 1.20216 0.99452 0.94194 0.93248 1.23635 1.01806 0.99723 0.96279 1.18965 0.95621 0.87735 0.84402 1.84817 1.35681 1.91921 1.16057 1.66661 1.12943 1.36421 1.04463 1.19980 0.94698 0.92766 0.88285 1.20784 1.00119 0.97236 0.94898 1.23182 1.03010 1.03236 0.91433 1.23009 0.91559 1.02716 1.02459 1.22111 0.98768 0.91303 1.02318 1.22512 1.02167 0.77432 0.98183 0.91842 0.91773 0.93344 0.94737 0.95132 0.80499 0.93023 0.89358 0.89731 0.90330 0.90474 0.80630 0.74058 0.85663 0.87890 0.87619 0.87865 0.88570 0.82932 0.90249 0.89974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.81 8.42 37.16 0.31 -1.50 16 2 C -0.08 -1.12 0.63 -152.25 -0.10 -1.22 16 3 C 0.17 3.06 5.25 -4.04 -0.02 3.04 16 4 N -0.75 -17.15 4.98 -59.91 -0.30 -17.45 16 5 C -0.24 -6.77 10.47 -15.06 -0.16 -6.93 16 6 H 0.09 2.67 8.06 -52.49 -0.42 2.24 16 7 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 8 N -0.93 -29.16 13.97 55.49 0.78 -28.39 16 9 Si 0.88 22.18 27.73 -169.99 -4.71 17.46 16 10 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 11 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 12 H -0.28 -6.64 6.52 56.52 0.37 -6.27 16 13 C -0.12 -1.16 5.91 -24.90 -0.15 -1.31 16 14 C 0.09 0.79 4.57 -3.06 -0.01 0.77 16 15 N -0.60 -7.66 3.31 -171.61 -0.57 -8.23 16 16 C 0.57 8.02 7.83 -12.19 -0.10 7.93 16 17 O -0.52 -9.26 16.76 5.36 0.09 -9.17 16 18 C -0.06 -0.70 5.90 -104.68 -0.62 -1.32 16 19 C -0.19 -1.84 8.61 -38.84 -0.33 -2.17 16 20 C 0.31 3.09 7.74 -17.17 -0.13 2.96 16 21 O -0.48 -3.77 13.56 -18.76 -0.25 -4.02 16 22 N -0.49 -5.40 10.27 -9.60 -0.10 -5.50 16 23 C 0.18 1.86 6.46 -82.65 -0.53 1.32 16 24 C -0.11 -0.89 6.21 -91.78 -0.57 -1.46 16 25 C -0.17 -1.13 9.79 -26.69 -0.26 -1.40 16 26 C -0.16 -1.11 10.24 -26.69 -0.27 -1.38 16 27 C -0.12 -1.37 8.92 -39.03 -0.35 -1.71 16 28 C 0.12 1.76 5.61 -2.41 -0.01 1.75 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 1.03 6.65 -51.93 -0.35 0.69 16 31 H 0.05 0.60 7.91 -51.93 -0.41 0.19 16 32 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.03 0.54 8.07 -51.93 -0.42 0.13 16 34 H 0.36 8.16 4.09 -40.82 -0.17 7.99 16 35 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 36 H 0.09 0.70 8.04 -51.93 -0.42 0.28 16 37 H 0.08 0.74 8.04 -51.93 -0.42 0.32 16 38 H 0.08 0.62 6.68 -51.93 -0.35 0.27 16 39 H 0.08 0.53 6.81 -51.93 -0.35 0.17 16 40 H 0.18 1.30 2.96 -52.80 -0.16 1.15 16 41 H 0.40 1.10 9.06 45.56 0.41 1.52 16 42 H 0.13 0.88 8.14 -51.92 -0.42 0.45 16 43 H 0.10 0.74 6.38 -51.93 -0.33 0.40 16 44 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 46 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.15 1.62 5.94 -52.49 -0.31 1.31 16 48 H 0.08 1.23 7.99 -51.93 -0.41 0.81 16 49 H 0.08 1.43 8.00 -51.93 -0.42 1.01 16 LS Contribution 391.24 15.07 5.90 5.90 Total: -1.00 -35.61 391.24 -8.80 -44.41 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -6.22 Total: 7.51 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: -3.40 Total: -2.53 kcal Atomic # 7 Polarization: -59.37 SS G_CDS: -0.19 Total: -59.56 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: -0.16 Total: -13.19 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.71 Total: 17.46 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.61 -8.80 -44.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733426009.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.544 kcal (2) G-P(sol) polarization free energy of solvation -35.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds