Wall clock time and date at job start Wed Apr 1 2020 03:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53073 * 109.44121 * 2 1 4 4 C 1.53194 * 109.29412 * 181.23877 * 3 2 1 5 5 N 1.46921 * 108.89268 * 305.58225 * 4 3 2 6 6 C 1.34779 * 120.62742 * 233.51044 * 5 4 3 7 7 O 1.21604 * 120.00473 * 356.08738 * 6 5 4 8 8 C 1.47437 * 119.99983 * 176.08178 * 6 5 4 9 9 C 1.39734 * 120.20547 * 54.00613 * 8 6 5 10 10 C 1.37745 * 119.92281 * 179.97438 * 9 8 6 11 11 C 1.38612 * 120.35565 * 0.02562 * 10 9 8 12 12 C 1.37953 * 120.42152 * 359.97438 * 11 10 9 13 13 C 1.38953 * 120.06466 * 359.74312 * 12 11 10 14 14 N 1.38868 * 120.17488 * 180.27474 * 13 12 11 15 15 C 1.46500 * 120.00465 * 5.52675 * 14 13 12 16 16 C 1.50697 * 109.47386 * 179.97438 * 15 14 13 17 17 O 1.21293 * 119.99986 * 0.02562 * 16 15 14 18 18 N 1.34778 * 120.00054 * 179.97438 * 16 15 14 19 19 C 1.37093 * 119.99957 * 180.02562 * 18 16 15 20 20 H 1.08002 * 120.00302 * 0.02562 * 19 18 16 21 21 C 1.38949 * 120.00034 * 180.02562 * 19 18 16 22 22 N 1.31415 * 120.00151 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00256 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47166 * 59.99755 * 23 21 19 25 25 H 1.48504 * 109.47167 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47333 * 299.99831 * 23 21 19 27 27 C 1.46921 * 118.74065 * 53.53884 * 5 4 3 28 28 C 1.53032 * 109.46267 * 120.20821 * 2 1 3 29 29 H 1.09002 * 109.46242 * 299.79432 * 1 2 3 30 30 H 1.09000 * 109.46972 * 59.79299 * 1 2 3 31 31 H 1.08993 * 109.47060 * 179.79769 * 1 2 3 32 32 H 1.08999 * 109.45653 * 240.18096 * 2 1 3 33 33 H 1.08995 * 109.39143 * 61.36386 * 3 2 1 34 34 H 1.09001 * 109.62586 * 301.25316 * 3 2 1 35 35 H 1.08996 * 109.58567 * 185.71789 * 4 3 2 36 36 H 1.09004 * 109.58736 * 65.43761 * 4 3 2 37 37 H 1.07997 * 120.03552 * 0.02562 * 9 8 6 38 38 H 1.08004 * 119.82505 * 179.97438 * 10 9 8 39 39 H 1.08005 * 119.79179 * 179.97438 * 11 10 9 40 40 H 1.08007 * 119.96571 * 180.02562 * 12 11 10 41 41 H 0.97005 * 120.00015 * 185.52151 * 14 13 12 42 42 H 1.09001 * 109.46972 * 299.99934 * 15 14 13 43 43 H 1.08998 * 109.46884 * 59.99747 * 15 14 13 44 44 H 0.97002 * 119.99959 * 0.02562 * 18 16 15 45 45 H 0.97003 * 120.00402 * 179.97438 * 22 21 19 46 46 H 1.08997 * 109.59204 * 66.17748 * 27 5 4 47 47 H 1.09007 * 109.58567 * 186.45940 * 27 5 4 48 48 H 1.09002 * 109.49943 * 58.67467 * 28 2 1 49 49 H 1.08999 * 109.52650 * 298.58977 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0395 1.4435 0.0000 4 6 3.5711 1.4396 -0.0313 5 7 4.0677 0.6215 1.0835 6 6 4.9618 1.1232 1.9583 7 8 5.4190 2.2372 1.7891 8 6 5.3856 0.3213 3.1208 9 6 5.8911 -0.9686 2.9383 10 6 6.2857 -1.7124 4.0284 11 6 6.1840 -1.1888 5.3078 12 6 5.6870 0.0830 5.5045 13 6 5.2892 0.8509 4.4169 14 7 4.7940 2.1335 4.6119 15 6 4.8021 2.7262 5.9516 16 6 4.2158 4.1131 5.8910 17 8 3.8287 4.5622 4.8328 18 7 4.1206 4.8542 7.0127 19 6 3.5867 6.1157 6.9576 20 1 3.2420 6.5156 6.0154 21 6 3.4891 6.8799 8.1140 22 7 3.9080 6.3932 9.2605 23 14 2.7610 8.5985 8.0391 24 1 1.3644 8.5231 7.5399 25 1 2.7690 9.1991 9.3973 26 1 3.5702 9.4394 7.1208 27 6 3.5715 -0.7540 1.2261 28 6 2.0399 -0.7260 1.2469 29 1 -0.3632 0.5107 0.8919 30 1 -0.3633 0.5170 -0.8881 31 1 -0.3633 -1.0276 -0.0036 32 1 1.8931 -0.5111 -0.8917 33 1 1.6953 1.9487 0.9024 34 1 1.6591 1.9660 -0.8777 35 1 3.9412 2.4598 0.0709 36 1 3.9163 1.0186 -0.9756 37 1 5.9730 -1.3814 1.9438 38 1 6.6759 -2.7094 3.8857 39 1 6.4957 -1.7802 6.1561 40 1 5.6113 0.4839 6.5046 41 1 4.4426 2.6372 3.8609 42 1 4.2077 2.1092 6.6254 43 1 5.8271 2.7812 6.3183 44 1 4.4298 4.4949 7.8590 45 1 3.8402 6.9268 10.0678 46 1 3.9145 -1.3554 0.3843 47 1 3.9439 -1.1822 2.1568 48 1 1.6575 -1.7467 1.2556 49 1 1.6978 -0.2017 2.1392 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175120940.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:00 Heat of formation + Delta-G solvation = -53.021463 kcal Electronic energy + Delta-G solvation = -30497.179491 eV Core-core repulsion = 26423.345006 eV Total energy + Delta-G solvation = -4073.834485 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.67070 -39.05536 -38.21948 -37.46784 -35.23516 -34.06732 -33.89182 -31.88400 -31.38442 -30.63108 -29.71794 -28.40378 -26.75377 -24.48144 -24.43726 -23.54203 -22.64124 -21.52082 -20.67428 -19.55090 -19.19454 -18.06317 -17.55511 -17.16384 -16.13794 -15.99247 -15.54666 -15.04427 -14.88394 -14.78901 -14.75145 -14.49122 -14.41233 -14.06242 -13.83075 -13.71855 -13.45241 -13.38630 -13.22672 -12.95771 -12.72889 -12.22939 -12.08230 -12.02615 -11.98293 -11.77199 -11.59900 -11.41642 -11.21165 -11.10576 -11.05568 -10.69112 -10.58192 -10.49576 -10.29812 -10.01802 -9.71291 -9.60825 -8.85395 -8.68034 -8.60717 -8.09090 -7.26944 -6.50879 -3.92407 1.16583 1.66373 2.75871 3.01027 3.14884 3.21944 3.25961 3.59466 3.74230 3.89579 4.13585 4.43704 4.49957 4.57610 4.70110 4.84709 4.87591 4.91372 5.04688 5.07470 5.16656 5.19777 5.26974 5.37497 5.39895 5.44546 5.49568 5.56165 5.59160 5.60638 5.69780 5.72754 5.76770 5.85793 5.86934 5.91711 5.95210 5.96638 6.10587 6.21406 6.25903 6.37245 6.50598 6.58506 6.85525 7.32827 7.46918 7.48332 7.92712 8.03344 8.25713 8.47118 9.06202 9.39683 9.88909 10.66168 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010322 B = 0.002929 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2712.099103 B = 9556.138295 C =11366.928883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.091 4.091 3 C -0.131 4.131 4 C 0.111 3.889 5 N -0.609 5.609 6 C 0.567 3.433 7 O -0.529 6.529 8 C -0.221 4.221 9 C -0.041 4.041 10 C -0.198 4.198 11 C -0.048 4.048 12 C -0.208 4.208 13 C 0.275 3.725 14 N -0.708 5.708 15 C 0.108 3.892 16 C 0.429 3.571 17 O -0.588 6.588 18 N -0.551 5.551 19 C -0.304 4.304 20 H 0.104 0.896 21 C 0.026 3.974 22 N -0.897 5.897 23 Si 0.933 3.067 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.272 1.272 27 C 0.101 3.899 28 C -0.131 4.131 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.094 0.906 36 H 0.064 0.936 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.122 0.878 40 H 0.129 0.871 41 H 0.417 0.583 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.395 0.605 45 H 0.274 0.726 46 H 0.066 0.934 47 H 0.097 0.903 48 H 0.074 0.926 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.950 -20.414 -12.751 24.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.110 4.110 3 C -0.169 4.169 4 C -0.011 4.011 5 N -0.343 5.343 6 C 0.357 3.643 7 O -0.406 6.406 8 C -0.230 4.230 9 C -0.060 4.060 10 C -0.219 4.219 11 C -0.067 4.067 12 C -0.231 4.231 13 C 0.163 3.837 14 N -0.335 5.335 15 C -0.021 4.021 16 C 0.214 3.786 17 O -0.474 6.474 18 N -0.186 5.186 19 C -0.433 4.433 20 H 0.122 0.878 21 C -0.177 4.177 22 N -0.538 5.538 23 Si 0.760 3.240 24 H -0.198 1.198 25 H -0.208 1.208 26 H -0.197 1.197 27 C -0.022 4.022 28 C -0.169 4.169 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.112 0.888 36 H 0.082 0.918 37 H 0.139 0.861 38 H 0.138 0.862 39 H 0.140 0.860 40 H 0.146 0.854 41 H 0.258 0.742 42 H 0.097 0.903 43 H 0.098 0.902 44 H 0.228 0.772 45 H 0.084 0.916 46 H 0.084 0.916 47 H 0.115 0.885 48 H 0.092 0.908 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.987 -19.240 -13.144 23.322 hybrid contribution -0.315 0.762 0.362 0.901 sum -1.302 -18.478 -12.782 22.506 Atomic orbital electron populations 1.21828 0.95012 1.01613 1.02006 1.21120 0.95754 0.95993 0.98137 1.22006 0.95117 0.96726 1.03093 1.21571 0.93738 0.97327 0.88459 1.48000 1.43330 1.14349 1.28577 1.18308 0.78400 0.85854 0.81776 1.90844 1.54893 1.20096 1.74719 1.19128 1.15019 0.97269 0.91552 1.20881 0.94845 0.91401 0.98861 1.20692 1.07968 1.00824 0.92404 1.20993 0.94511 0.94165 0.97035 1.20693 1.08890 0.95890 0.97634 1.17682 0.89261 0.84740 0.91986 1.44617 1.64897 1.13170 1.10852 1.21049 1.01540 0.94581 0.84884 1.19697 0.86282 0.87156 0.85464 1.90541 1.54413 1.72867 1.29560 1.41764 1.53856 1.14680 1.08330 1.19685 1.37135 0.90165 0.96352 0.87800 1.25297 0.97353 1.00398 0.94603 1.69600 1.46445 1.38595 0.99133 0.85880 0.79586 0.81279 0.77286 1.19792 1.20832 1.19746 1.21956 0.94353 0.82774 1.03139 1.21993 0.95131 1.01025 0.98772 0.92518 0.92675 0.92717 0.91204 0.91149 0.90702 0.88796 0.91778 0.86083 0.86220 0.85986 0.85358 0.74194 0.90299 0.90211 0.77164 0.91591 0.91596 0.88494 0.90769 0.91222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.19 37.16 0.34 -0.77 16 2 C -0.09 -0.75 2.68 -90.56 -0.24 -0.99 16 3 C -0.13 -1.31 5.37 -26.59 -0.14 -1.45 16 4 C 0.11 1.28 6.42 -3.71 -0.02 1.26 16 5 N -0.61 -7.64 2.97 -174.03 -0.52 -8.15 16 6 C 0.57 9.15 6.48 -12.51 -0.08 9.07 16 7 O -0.53 -10.79 15.37 5.27 0.08 -10.71 16 8 C -0.22 -3.24 4.90 -104.80 -0.51 -3.76 16 9 C -0.04 -0.46 7.42 -39.20 -0.29 -0.75 16 10 C -0.20 -2.01 10.02 -39.62 -0.40 -2.40 16 11 C -0.05 -0.51 10.03 -39.55 -0.40 -0.91 16 12 C -0.21 -2.74 9.30 -39.42 -0.37 -3.11 16 13 C 0.27 4.35 6.64 -83.62 -0.56 3.79 16 14 N -0.71 -13.18 5.53 -59.62 -0.33 -13.51 16 15 C 0.11 1.97 5.42 -5.20 -0.03 1.94 16 16 C 0.43 10.27 7.85 -10.99 -0.09 10.18 16 17 O -0.59 -16.35 15.24 5.55 0.08 -16.27 16 18 N -0.55 -13.88 5.29 -10.96 -0.06 -13.94 16 19 C -0.30 -8.46 9.68 -14.94 -0.14 -8.60 16 20 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 21 C 0.03 0.69 5.50 -17.47 -0.10 0.59 16 22 N -0.90 -24.04 13.05 55.50 0.72 -23.32 16 23 Si 0.93 20.94 29.55 -169.99 -5.02 15.91 16 24 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 25 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 26 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 27 C 0.10 0.93 5.52 -3.71 -0.02 0.91 16 28 C -0.13 -1.12 5.36 -26.61 -0.14 -1.26 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.09 1.31 7.03 -51.93 -0.36 0.95 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.12 1.10 7.36 -52.49 -0.39 0.72 16 38 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 39 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 40 H 0.13 1.55 6.72 -52.48 -0.35 1.20 16 41 H 0.42 8.96 5.58 -40.82 -0.23 8.73 16 42 H 0.08 1.25 7.73 -51.93 -0.40 0.85 16 43 H 0.08 1.32 8.12 -51.93 -0.42 0.90 16 44 H 0.39 9.36 7.90 -40.82 -0.32 9.03 16 45 H 0.27 6.95 8.31 -40.82 -0.34 6.62 16 46 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.10 0.90 4.73 -51.93 -0.25 0.66 16 48 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 394.26 15.07 5.94 5.94 Total: -1.00 -33.17 394.26 -9.59 -42.76 By element: Atomic # 1 Polarization: 24.86 SS G_CDS: -7.31 Total: 17.55 kcal Atomic # 6 Polarization: 6.93 SS G_CDS: -3.19 Total: 3.74 kcal Atomic # 7 Polarization: -58.75 SS G_CDS: -0.18 Total: -58.93 kcal Atomic # 8 Polarization: -27.14 SS G_CDS: 0.17 Total: -26.97 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.17 -9.59 -42.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175120940.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.266 kcal (2) G-P(sol) polarization free energy of solvation -33.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds