Wall clock time and date at job start Wed Apr 1 2020 03:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53073 * 109.44121 * 2 1 4 4 C 1.53194 * 109.29412 * 181.23877 * 3 2 1 5 5 N 1.46921 * 108.89268 * 305.58225 * 4 3 2 6 6 C 1.34779 * 120.62742 * 233.51044 * 5 4 3 7 7 O 1.21604 * 120.00473 * 356.08738 * 6 5 4 8 8 C 1.47437 * 119.99983 * 176.08178 * 6 5 4 9 9 C 1.39734 * 120.20547 * 54.00613 * 8 6 5 10 10 C 1.37745 * 119.92281 * 179.97438 * 9 8 6 11 11 C 1.38612 * 120.35565 * 0.02562 * 10 9 8 12 12 C 1.37953 * 120.42152 * 359.97438 * 11 10 9 13 13 C 1.38953 * 120.06466 * 359.74312 * 12 11 10 14 14 N 1.38868 * 120.17488 * 180.27474 * 13 12 11 15 15 C 1.46500 * 120.00465 * 5.52675 * 14 13 12 16 16 C 1.50697 * 109.47386 * 179.97438 * 15 14 13 17 17 O 1.21293 * 119.99986 * 0.02562 * 16 15 14 18 18 N 1.34778 * 120.00054 * 179.97438 * 16 15 14 19 19 C 1.37093 * 119.99957 * 180.02562 * 18 16 15 20 20 H 1.08002 * 120.00302 * 0.02562 * 19 18 16 21 21 C 1.38949 * 120.00034 * 180.02562 * 19 18 16 22 22 N 1.31415 * 120.00151 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00256 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47166 * 59.99755 * 23 21 19 25 25 H 1.48504 * 109.47167 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47333 * 299.99831 * 23 21 19 27 27 C 1.46921 * 118.74065 * 53.53884 * 5 4 3 28 28 C 1.53032 * 109.46267 * 120.20821 * 2 1 3 29 29 H 1.09002 * 109.46242 * 299.79432 * 1 2 3 30 30 H 1.09000 * 109.46972 * 59.79299 * 1 2 3 31 31 H 1.08993 * 109.47060 * 179.79769 * 1 2 3 32 32 H 1.08999 * 109.45653 * 240.18096 * 2 1 3 33 33 H 1.08995 * 109.39143 * 61.36386 * 3 2 1 34 34 H 1.09001 * 109.62586 * 301.25316 * 3 2 1 35 35 H 1.08996 * 109.58567 * 185.71789 * 4 3 2 36 36 H 1.09004 * 109.58736 * 65.43761 * 4 3 2 37 37 H 1.07997 * 120.03552 * 0.02562 * 9 8 6 38 38 H 1.08004 * 119.82505 * 179.97438 * 10 9 8 39 39 H 1.08005 * 119.79179 * 179.97438 * 11 10 9 40 40 H 1.08007 * 119.96571 * 180.02562 * 12 11 10 41 41 H 0.97005 * 120.00015 * 185.52151 * 14 13 12 42 42 H 1.09001 * 109.46972 * 299.99934 * 15 14 13 43 43 H 1.08998 * 109.46884 * 59.99747 * 15 14 13 44 44 H 0.97002 * 119.99959 * 0.02562 * 18 16 15 45 45 H 0.97003 * 120.00402 * 179.97438 * 22 21 19 46 46 H 1.08997 * 109.59204 * 66.17748 * 27 5 4 47 47 H 1.09007 * 109.58567 * 186.45940 * 27 5 4 48 48 H 1.09002 * 109.49943 * 58.67467 * 28 2 1 49 49 H 1.08999 * 109.52650 * 298.58977 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0395 1.4435 0.0000 4 6 3.5711 1.4396 -0.0313 5 7 4.0677 0.6215 1.0835 6 6 4.9618 1.1232 1.9583 7 8 5.4190 2.2372 1.7891 8 6 5.3856 0.3213 3.1208 9 6 5.8911 -0.9686 2.9383 10 6 6.2857 -1.7124 4.0284 11 6 6.1840 -1.1888 5.3078 12 6 5.6870 0.0830 5.5045 13 6 5.2892 0.8509 4.4169 14 7 4.7940 2.1335 4.6119 15 6 4.8021 2.7262 5.9516 16 6 4.2158 4.1131 5.8910 17 8 3.8287 4.5622 4.8328 18 7 4.1206 4.8542 7.0127 19 6 3.5867 6.1157 6.9576 20 1 3.2420 6.5156 6.0154 21 6 3.4891 6.8799 8.1140 22 7 3.9080 6.3932 9.2605 23 14 2.7610 8.5985 8.0391 24 1 1.3644 8.5231 7.5399 25 1 2.7690 9.1991 9.3973 26 1 3.5702 9.4394 7.1208 27 6 3.5715 -0.7540 1.2261 28 6 2.0399 -0.7260 1.2469 29 1 -0.3632 0.5107 0.8919 30 1 -0.3633 0.5170 -0.8881 31 1 -0.3633 -1.0276 -0.0036 32 1 1.8931 -0.5111 -0.8917 33 1 1.6953 1.9487 0.9024 34 1 1.6591 1.9660 -0.8777 35 1 3.9412 2.4598 0.0709 36 1 3.9163 1.0186 -0.9756 37 1 5.9730 -1.3814 1.9438 38 1 6.6759 -2.7094 3.8857 39 1 6.4957 -1.7802 6.1561 40 1 5.6113 0.4839 6.5046 41 1 4.4426 2.6372 3.8609 42 1 4.2077 2.1092 6.6254 43 1 5.8271 2.7812 6.3183 44 1 4.4298 4.4949 7.8590 45 1 3.8402 6.9268 10.0678 46 1 3.9145 -1.3554 0.3843 47 1 3.9439 -1.1822 2.1568 48 1 1.6575 -1.7467 1.2556 49 1 1.6978 -0.2017 2.1392 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175120940.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:59 Heat of formation + Delta-G solvation = -75.132388 kcal Electronic energy + Delta-G solvation = -30498.138292 eV Core-core repulsion = 26423.345006 eV Total energy + Delta-G solvation = -4074.793286 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.73393 -40.48472 -39.64722 -38.53223 -36.61528 -35.89248 -34.94209 -33.44253 -32.76946 -31.53980 -30.91771 -29.24834 -28.23575 -26.28779 -25.38401 -24.36171 -23.55915 -22.63493 -21.55873 -21.20291 -20.30061 -20.03128 -18.74637 -18.30001 -17.35264 -17.26681 -17.06865 -16.50194 -16.42188 -16.06438 -15.74448 -15.62710 -15.51305 -15.18673 -14.94378 -14.77661 -14.58619 -14.53820 -14.39820 -14.12857 -13.89657 -13.68024 -13.58006 -13.23469 -12.95326 -12.82345 -12.75577 -12.66504 -12.53317 -12.24386 -12.16855 -12.06216 -11.86812 -11.63490 -11.46733 -11.36186 -11.09532 -10.87040 -10.61769 -10.14900 -9.82982 -9.65232 -8.56146 -8.42887 -6.06351 0.20103 0.69788 1.33266 1.37695 1.48646 1.61617 1.86078 2.03799 2.16011 2.37041 2.93096 3.07422 3.10486 3.53092 3.77599 3.81506 3.89630 3.96513 4.09089 4.11405 4.23187 4.29072 4.31548 4.39286 4.41615 4.51638 4.55139 4.57939 4.68051 4.71069 4.74713 4.80633 4.89416 4.92589 5.03228 5.05843 5.07482 5.17603 5.28496 5.32222 5.33148 5.49725 5.50523 5.57539 5.68475 5.82005 5.96705 6.22711 6.38403 6.46516 6.59199 6.99389 7.11352 7.38235 7.92402 8.60524 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010322 B = 0.002929 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2712.099103 B = 9556.138295 C =11366.928883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 C -0.127 4.127 4 C 0.107 3.893 5 N -0.603 5.603 6 C 0.557 3.443 7 O -0.590 6.590 8 C -0.237 4.237 9 C -0.038 4.038 10 C -0.181 4.181 11 C -0.042 4.042 12 C -0.216 4.216 13 C 0.241 3.759 14 N -0.731 5.731 15 C 0.125 3.875 16 C 0.424 3.576 17 O -0.634 6.634 18 N -0.555 5.555 19 C -0.343 4.343 20 H 0.077 0.923 21 C -0.005 4.005 22 N -0.912 5.912 23 Si 0.994 3.006 24 H -0.271 1.271 25 H -0.265 1.265 26 H -0.273 1.273 27 C 0.096 3.904 28 C -0.128 4.128 29 H 0.038 0.962 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.035 0.965 34 H 0.090 0.910 35 H 0.057 0.943 36 H 0.093 0.907 37 H 0.146 0.854 38 H 0.159 0.841 39 H 0.157 0.843 40 H 0.135 0.865 41 H 0.398 0.602 42 H 0.106 0.894 43 H 0.098 0.902 44 H 0.401 0.599 45 H 0.282 0.718 46 H 0.099 0.901 47 H 0.098 0.902 48 H 0.103 0.897 49 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.676 -24.127 -12.780 27.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.105 4.105 3 C -0.165 4.165 4 C -0.015 4.015 5 N -0.335 5.335 6 C 0.348 3.652 7 O -0.471 6.471 8 C -0.246 4.246 9 C -0.057 4.057 10 C -0.201 4.201 11 C -0.061 4.061 12 C -0.239 4.239 13 C 0.133 3.867 14 N -0.359 5.359 15 C -0.002 4.002 16 C 0.212 3.788 17 O -0.522 6.522 18 N -0.191 5.191 19 C -0.472 4.472 20 H 0.095 0.905 21 C -0.206 4.206 22 N -0.551 5.551 23 Si 0.817 3.183 24 H -0.196 1.196 25 H -0.189 1.189 26 H -0.199 1.199 27 C -0.025 4.025 28 C -0.166 4.166 29 H 0.057 0.943 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.112 0.888 33 H 0.054 0.946 34 H 0.108 0.892 35 H 0.076 0.924 36 H 0.111 0.889 37 H 0.164 0.836 38 H 0.177 0.823 39 H 0.175 0.825 40 H 0.153 0.847 41 H 0.235 0.765 42 H 0.124 0.876 43 H 0.116 0.884 44 H 0.236 0.764 45 H 0.091 0.909 46 H 0.117 0.883 47 H 0.116 0.884 48 H 0.121 0.879 49 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -0.714 -23.059 -13.148 26.553 hybrid contribution -0.374 1.768 0.316 1.834 sum -1.088 -21.291 -12.831 24.883 Atomic orbital electron populations 1.21810 0.94458 1.02519 1.01468 1.21124 0.96161 0.94290 0.98903 1.21982 0.93949 0.98490 1.02103 1.21656 0.94713 0.95766 0.89361 1.48152 1.41921 1.15715 1.27723 1.18750 0.78621 0.85322 0.82558 1.90798 1.57485 1.22649 1.76207 1.19275 1.16132 0.98606 0.90538 1.21189 0.93785 0.89919 1.00788 1.21185 1.05459 1.01938 0.91496 1.21439 0.92778 0.93135 0.98702 1.20926 1.09006 0.96825 0.97137 1.18062 0.91040 0.84035 0.93524 1.44585 1.67044 1.14551 1.09738 1.20923 1.02321 0.91045 0.85939 1.20686 0.84923 0.88955 0.84277 1.90510 1.56016 1.74447 1.31191 1.41775 1.54074 1.14303 1.08978 1.19639 1.39558 0.91971 0.96070 0.90487 1.26066 0.97011 1.03707 0.93865 1.69648 1.46132 1.39855 0.99509 0.84977 0.78624 0.76682 0.77984 1.19618 1.18871 1.19855 1.22255 0.94729 0.80944 1.04598 1.21995 0.94675 1.02284 0.97693 0.94309 0.92034 0.91039 0.88842 0.94577 0.89188 0.92434 0.88900 0.83598 0.82345 0.82520 0.84680 0.76484 0.87588 0.88413 0.76402 0.90860 0.88297 0.88361 0.87882 0.94094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.19 71.98 0.66 -1.34 16 2 C -0.09 -1.27 2.68 -10.76 -0.03 -1.30 16 3 C -0.13 -2.63 5.37 30.68 0.16 -2.46 16 4 C 0.11 2.58 6.42 86.36 0.55 3.14 16 5 N -0.60 -15.44 2.97 -822.78 -2.45 -17.88 16 6 C 0.56 19.00 6.48 86.67 0.56 19.57 16 7 O -0.59 -26.37 15.37 -4.04 -0.06 -26.43 16 8 C -0.24 -6.99 4.90 -19.98 -0.10 -7.09 16 9 C -0.04 -0.76 7.42 22.51 0.17 -0.59 16 10 C -0.18 -2.84 10.02 22.24 0.22 -2.62 16 11 C -0.04 -0.74 10.03 22.29 0.22 -0.51 16 12 C -0.22 -5.35 9.30 22.37 0.21 -5.14 16 13 C 0.24 7.75 6.64 38.71 0.26 8.01 16 14 N -0.73 -28.90 5.53 -342.55 -1.89 -30.79 16 15 C 0.13 4.75 5.42 85.63 0.46 5.22 16 16 C 0.42 21.50 7.85 87.66 0.69 22.19 16 17 O -0.63 -37.94 15.24 -3.07 -0.05 -37.99 16 18 N -0.56 -29.23 5.29 -306.99 -1.62 -30.85 16 19 C -0.34 -19.94 9.68 84.04 0.81 -19.13 16 20 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 21 C -0.01 -0.29 5.50 84.93 0.47 0.18 16 22 N -0.91 -48.90 13.05 21.66 0.28 -48.62 16 23 Si 0.99 43.30 29.55 68.60 2.03 45.33 16 24 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 25 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 26 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 27 C 0.10 1.58 5.52 86.36 0.48 2.05 16 28 C -0.13 -1.99 5.36 30.67 0.16 -1.83 16 29 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.06 1.81 7.03 -2.39 -0.02 1.79 16 36 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 37 H 0.15 2.12 7.36 -2.91 -0.02 2.10 16 38 H 0.16 1.36 8.06 -2.91 -0.02 1.33 16 39 H 0.16 1.69 8.06 -2.91 -0.02 1.67 16 40 H 0.14 3.05 6.72 -2.91 -0.02 3.03 16 41 H 0.40 18.77 5.58 -92.70 -0.52 18.26 16 42 H 0.11 3.37 7.73 -2.39 -0.02 3.35 16 43 H 0.10 3.30 8.12 -2.39 -0.02 3.28 16 44 H 0.40 19.59 7.90 -92.71 -0.73 18.86 16 45 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16 46 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 47 H 0.10 1.61 4.73 -2.38 -0.01 1.60 16 48 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 49 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -79.42 394.26 1.94 -77.48 By element: Atomic # 1 Polarization: 51.67 SS G_CDS: -0.27 Total: 51.41 kcal Atomic # 6 Polarization: 12.38 SS G_CDS: 5.97 Total: 18.35 kcal Atomic # 7 Polarization: -122.47 SS G_CDS: -5.68 Total: -128.15 kcal Atomic # 8 Polarization: -64.31 SS G_CDS: -0.11 Total: -64.42 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -79.42 1.94 -77.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175120940.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.351 kcal (2) G-P(sol) polarization free energy of solvation -79.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds