Wall clock time and date at job start Wed Apr 1 2020 03:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53044 * 109.45940 * 2 1 4 4 C 1.53183 * 109.31405 * 181.37004 * 3 2 1 5 5 N 1.46924 * 108.77772 * 305.36782 * 4 3 2 6 6 C 1.34783 * 120.63123 * 233.58705 * 5 4 3 7 7 O 1.21346 * 119.99886 * 354.86579 * 6 5 4 8 8 C 1.49450 * 119.99936 * 174.85985 * 6 5 4 9 9 O 1.21351 * 119.99681 * 85.22594 * 8 6 5 10 10 N 1.34769 * 120.00179 * 265.21912 * 8 6 5 11 11 C 1.46502 * 120.00302 * 354.88558 * 10 8 6 12 12 C 1.50697 * 109.47318 * 275.09964 * 11 10 8 13 13 H 1.08005 * 119.99820 * 359.97438 * 12 11 10 14 14 C 1.37880 * 119.99951 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00112 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99771 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47355 * 59.99796 * 16 14 12 18 18 H 1.48498 * 109.47310 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47385 * 299.99687 * 16 14 12 20 20 C 1.46506 * 120.00031 * 174.88939 * 10 8 6 21 21 C 1.50693 * 109.47310 * 90.00214 * 20 10 8 22 22 C 1.38229 * 119.62321 * 94.97841 * 21 20 10 23 23 C 1.38624 * 119.16083 * 179.79049 * 22 21 20 24 24 C 1.38674 * 118.42369 * 0.47405 * 23 22 21 25 25 C 1.38180 * 119.16105 * 359.50212 * 24 23 22 26 26 N 1.31857 * 119.61376 * 274.99671 * 21 20 10 27 27 C 1.46925 * 118.74341 * 53.85352 * 5 4 3 28 28 C 1.53038 * 109.44828 * 120.05806 * 2 1 3 29 29 H 1.09002 * 109.46867 * 60.00672 * 1 2 3 30 30 H 1.09003 * 109.46936 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47591 * 300.00206 * 1 2 3 32 32 H 1.08995 * 109.46271 * 240.02504 * 2 1 3 33 33 H 1.08998 * 109.49445 * 61.41643 * 3 2 1 34 34 H 1.08999 * 109.49747 * 301.31985 * 3 2 1 35 35 H 1.09004 * 109.59148 * 185.57828 * 4 3 2 36 36 H 1.09001 * 109.70933 * 65.21971 * 4 3 2 37 37 H 1.08997 * 109.46862 * 35.09650 * 11 10 8 38 38 H 1.08998 * 109.47256 * 155.09017 * 11 10 8 39 39 H 0.96999 * 119.99389 * 180.02562 * 15 14 12 40 40 H 1.09000 * 109.47059 * 329.99232 * 20 10 8 41 41 H 1.09004 * 109.46734 * 209.99937 * 20 10 8 42 42 H 1.08000 * 120.41477 * 0.02562 * 22 21 20 43 43 H 1.08003 * 120.78711 * 180.22871 * 23 22 21 44 44 H 1.07993 * 120.41984 * 179.78646 * 24 23 22 45 45 H 1.08004 * 119.61833 * 180.25422 * 25 24 23 46 46 H 1.09004 * 109.58091 * 65.92824 * 27 5 4 47 47 H 1.08991 * 109.59415 * 186.35809 * 27 5 4 48 48 H 1.09000 * 109.49998 * 298.58024 * 28 2 1 49 49 H 1.09000 * 109.49693 * 58.67342 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4430 0.0000 4 6 3.5713 1.4393 -0.0346 5 7 4.0676 0.6239 1.0824 6 6 4.9616 1.1277 1.9562 7 8 5.4346 2.2300 1.7726 8 6 5.3702 0.3288 3.1513 9 8 6.2635 -0.4874 3.0590 10 7 4.7468 0.5149 4.3316 11 6 3.7469 1.5764 4.4726 12 6 4.4370 2.8769 4.7940 13 1 5.5127 2.9095 4.8847 14 6 3.6949 4.0251 4.9734 15 7 2.3850 3.9854 4.8636 16 14 4.5503 5.6371 5.3726 17 1 5.4890 5.9843 4.2755 18 1 3.5369 6.7131 5.5154 19 1 5.3051 5.4955 6.6436 20 6 5.0689 -0.3443 5.4737 21 6 6.1984 0.2686 6.2606 22 6 5.9158 1.0628 7.3561 23 6 6.9624 1.6182 8.0757 24 6 8.2598 1.3611 7.6589 25 6 8.4651 0.5570 6.5541 26 7 7.4450 0.0414 5.8959 27 6 3.5753 -0.7530 1.2254 28 6 2.0396 -0.7228 1.2490 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8932 -0.5134 -0.8902 33 1 1.6975 1.9497 0.9023 34 1 1.6575 1.9640 -0.8778 35 1 3.9416 2.4596 0.0651 36 1 3.9167 1.0157 -0.9777 37 1 3.1930 1.6799 3.5396 38 1 3.0579 1.3218 5.2779 39 1 1.8631 4.7932 4.9894 40 1 5.3684 -1.3289 5.1145 41 1 4.1917 -0.4423 6.1133 42 1 4.8927 1.2451 7.6499 43 1 6.7718 2.2398 8.9381 44 1 9.0991 1.7803 8.1937 45 1 9.4726 0.3485 6.2255 46 1 3.9188 -1.3531 0.3827 47 1 3.9481 -1.1796 2.1565 48 1 1.6972 -0.1957 2.1395 49 1 1.6570 -1.7434 1.2602 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274541281.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:16 Heat of formation + Delta-G solvation = -33.730085 kcal Electronic energy + Delta-G solvation = -32072.414209 eV Core-core repulsion = 27999.416261 eV Total energy + Delta-G solvation = -4072.997948 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.39243 -39.67154 -38.35899 -37.06056 -35.27724 -33.70192 -32.76522 -31.99021 -31.34293 -30.98013 -28.35475 -27.70921 -26.53721 -24.27306 -23.26579 -23.16702 -22.85664 -22.16387 -21.16732 -19.88402 -18.33032 -17.10590 -16.78539 -16.45692 -16.10251 -15.85877 -15.68082 -15.15450 -14.72366 -14.61260 -14.56227 -14.25940 -14.01318 -13.79898 -13.47362 -13.34973 -12.94310 -12.81287 -12.76898 -12.60002 -12.40947 -12.21938 -11.81007 -11.77379 -11.75275 -11.42681 -11.35782 -11.14606 -10.97909 -10.85551 -10.73942 -10.59347 -10.38462 -10.28867 -10.12468 -9.78142 -9.42796 -8.98546 -8.86145 -8.57204 -8.46879 -8.35862 -7.91934 -6.13881 -4.16988 1.49321 1.74868 2.79805 2.89274 3.29123 3.32609 3.34400 3.41908 3.97137 4.35998 4.41421 4.72483 4.77125 4.79624 4.85338 5.00314 5.15861 5.19797 5.21834 5.22460 5.35978 5.44536 5.47004 5.55606 5.56274 5.66521 5.70690 5.77623 5.83623 5.85861 5.88901 5.97283 6.04509 6.09029 6.17059 6.19854 6.21258 6.25309 6.51466 6.53165 6.55424 6.59576 6.77725 7.05429 7.11954 7.33924 7.60202 7.81538 8.03186 8.05838 8.49047 8.49643 8.61134 8.89453 9.49281 10.93775 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010390 B = 0.004621 C = 0.003712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2694.302662 B = 6058.142513 C = 7540.432865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 C -0.130 4.130 4 C 0.116 3.884 5 N -0.606 5.606 6 C 0.529 3.471 7 O -0.496 6.496 8 C 0.520 3.480 9 O -0.528 6.528 10 N -0.577 5.577 11 C 0.238 3.762 12 C -0.519 4.519 13 H 0.058 0.942 14 C 0.069 3.931 15 N -0.894 5.894 16 Si 0.892 3.108 17 H -0.275 1.275 18 H -0.287 1.287 19 H -0.277 1.277 20 C 0.171 3.829 21 C 0.120 3.880 22 C -0.133 4.133 23 C -0.083 4.083 24 C -0.179 4.179 25 C 0.088 3.912 26 N -0.459 5.459 27 C 0.112 3.888 28 C -0.131 4.131 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.093 0.907 36 H 0.063 0.937 37 H 0.037 0.963 38 H 0.042 0.958 39 H 0.264 0.736 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.136 0.864 43 H 0.129 0.871 44 H 0.126 0.874 45 H 0.148 0.852 46 H 0.069 0.931 47 H 0.081 0.919 48 H 0.075 0.925 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.969 -9.643 -2.258 10.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 C -0.169 4.169 4 C -0.007 4.007 5 N -0.343 5.343 6 C 0.312 3.688 7 O -0.367 6.367 8 C 0.302 3.698 9 O -0.405 6.405 10 N -0.309 5.309 11 C 0.118 3.882 12 C -0.558 4.558 13 H 0.076 0.924 14 C -0.133 4.133 15 N -0.533 5.533 16 Si 0.719 3.281 17 H -0.200 1.200 18 H -0.212 1.212 19 H -0.202 1.202 20 C 0.047 3.953 21 C -0.019 4.019 22 C -0.153 4.153 23 C -0.109 4.109 24 C -0.199 4.199 25 C -0.069 4.069 26 N -0.168 5.168 27 C -0.011 4.011 28 C -0.169 4.169 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.111 0.889 36 H 0.081 0.919 37 H 0.054 0.946 38 H 0.060 0.940 39 H 0.073 0.927 40 H 0.109 0.891 41 H 0.112 0.888 42 H 0.154 0.846 43 H 0.146 0.854 44 H 0.144 0.856 45 H 0.165 0.835 46 H 0.087 0.913 47 H 0.100 0.900 48 H 0.094 0.906 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.252 -9.856 -3.116 10.412 hybrid contribution 0.270 1.893 1.046 2.180 sum -0.982 -7.963 -2.070 8.286 Atomic orbital electron populations 1.21816 0.95084 1.01430 1.01983 1.21098 0.95657 0.96110 0.97995 1.21995 0.94977 0.96639 1.03254 1.21551 0.93786 0.97240 0.88083 1.47988 1.43255 1.14336 1.28718 1.20234 0.78997 0.86151 0.83445 1.90775 1.52599 1.18833 1.74486 1.20005 0.82820 0.82415 0.84576 1.90756 1.29289 1.35194 1.85212 1.48253 1.40465 1.34195 1.08001 1.19558 0.86037 0.84128 0.98431 1.21288 0.93694 0.92518 1.48263 0.92386 1.24812 0.94714 0.98779 0.95019 1.69896 1.04656 1.29031 1.49730 0.86637 0.79350 0.82991 0.79078 1.20017 1.21226 1.20235 1.20224 0.94124 0.93804 0.87175 1.21553 0.92540 0.95112 0.92706 1.21972 1.00570 0.96799 0.95964 1.21499 0.92683 0.97494 0.99247 1.22046 0.97665 1.00919 0.99304 1.22650 0.98013 0.94220 0.92036 1.67554 0.99312 1.21667 1.28278 1.21767 0.94390 0.82456 1.02483 1.22082 0.94703 1.00964 0.99133 0.92859 0.92884 0.92323 0.91353 0.90521 0.90956 0.88862 0.91909 0.94561 0.94011 0.92691 0.89102 0.88818 0.84567 0.85354 0.85562 0.83500 0.91293 0.90045 0.90646 0.90903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.19 37.16 0.34 -1.08 16 2 C -0.09 -0.98 2.68 -90.58 -0.24 -1.23 16 3 C -0.13 -1.69 5.36 -26.61 -0.14 -1.83 16 4 C 0.12 1.74 6.41 -3.72 -0.02 1.72 16 5 N -0.61 -10.55 2.97 -173.02 -0.51 -11.06 16 6 C 0.53 11.73 5.69 -11.58 -0.07 11.66 16 7 O -0.50 -12.83 16.53 5.50 0.09 -12.74 16 8 C 0.52 11.57 5.42 -11.59 -0.06 11.50 16 9 O -0.53 -12.38 16.70 5.50 0.09 -12.29 16 10 N -0.58 -12.16 2.45 -176.94 -0.43 -12.59 16 11 C 0.24 5.58 5.02 -5.19 -0.03 5.56 16 12 C -0.52 -13.92 9.34 -34.44 -0.32 -14.24 16 13 H 0.06 1.69 7.81 -52.48 -0.41 1.28 16 14 C 0.07 1.88 5.46 -17.82 -0.10 1.78 16 15 N -0.89 -24.64 13.29 55.43 0.74 -23.91 16 16 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 17 H -0.27 -7.01 7.11 56.52 0.40 -6.61 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 20 C 0.17 3.07 5.72 -5.19 -0.03 3.04 16 21 C 0.12 2.28 6.36 -82.59 -0.53 1.76 16 22 C -0.13 -2.32 9.72 -39.44 -0.38 -2.70 16 23 C -0.08 -1.30 10.18 -39.28 -0.40 -1.70 16 24 C -0.18 -2.67 10.11 -39.44 -0.40 -3.07 16 25 C 0.09 1.48 11.18 -17.55 -0.20 1.28 16 26 N -0.46 -9.11 10.27 -9.47 -0.10 -9.20 16 27 C 0.11 1.56 6.38 -3.49 -0.02 1.54 16 28 C -0.13 -1.55 5.38 -26.39 -0.14 -1.69 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.09 1.62 7.04 -51.93 -0.37 1.26 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.04 0.91 6.98 -51.93 -0.36 0.55 16 38 H 0.04 0.97 7.83 -51.93 -0.41 0.57 16 39 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 40 H 0.09 1.58 7.50 -51.93 -0.39 1.19 16 41 H 0.09 1.41 7.76 -51.93 -0.40 1.00 16 42 H 0.14 2.25 8.06 -52.49 -0.42 1.82 16 43 H 0.13 1.67 8.06 -52.48 -0.42 1.24 16 44 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 45 H 0.15 2.04 8.06 -52.48 -0.42 1.62 16 46 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.08 1.23 6.29 -51.93 -0.33 0.90 16 48 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 49 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 405.85 15.07 6.12 6.12 Total: -1.00 -33.81 405.85 -9.49 -43.30 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -7.72 Total: 3.22 kcal Atomic # 6 Polarization: 15.05 SS G_CDS: -2.74 Total: 12.32 kcal Atomic # 7 Polarization: -56.46 SS G_CDS: -0.31 Total: -56.77 kcal Atomic # 8 Polarization: -25.21 SS G_CDS: 0.18 Total: -25.03 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.81 -9.49 -43.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274541281.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.566 kcal (2) G-P(sol) polarization free energy of solvation -33.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds