Wall clock time and date at job start Wed Apr 1 2020 03:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53044 * 109.45940 * 2 1 4 4 C 1.53183 * 109.31405 * 181.37004 * 3 2 1 5 5 N 1.46924 * 108.77772 * 305.36782 * 4 3 2 6 6 C 1.34783 * 120.63123 * 233.58705 * 5 4 3 7 7 O 1.21346 * 119.99886 * 354.86579 * 6 5 4 8 8 C 1.49450 * 119.99936 * 174.85985 * 6 5 4 9 9 O 1.21351 * 119.99681 * 85.22594 * 8 6 5 10 10 N 1.34769 * 120.00179 * 265.21912 * 8 6 5 11 11 C 1.46502 * 120.00302 * 354.88558 * 10 8 6 12 12 C 1.50697 * 109.47318 * 275.09964 * 11 10 8 13 13 H 1.08005 * 119.99820 * 359.97438 * 12 11 10 14 14 C 1.37880 * 119.99951 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00112 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99771 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47355 * 59.99796 * 16 14 12 18 18 H 1.48498 * 109.47310 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47385 * 299.99687 * 16 14 12 20 20 C 1.46506 * 120.00031 * 174.88939 * 10 8 6 21 21 C 1.50693 * 109.47310 * 90.00214 * 20 10 8 22 22 C 1.38229 * 119.62321 * 94.97841 * 21 20 10 23 23 C 1.38624 * 119.16083 * 179.79049 * 22 21 20 24 24 C 1.38674 * 118.42369 * 0.47405 * 23 22 21 25 25 C 1.38180 * 119.16105 * 359.50212 * 24 23 22 26 26 N 1.31857 * 119.61376 * 274.99671 * 21 20 10 27 27 C 1.46925 * 118.74341 * 53.85352 * 5 4 3 28 28 C 1.53038 * 109.44828 * 120.05806 * 2 1 3 29 29 H 1.09002 * 109.46867 * 60.00672 * 1 2 3 30 30 H 1.09003 * 109.46936 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47591 * 300.00206 * 1 2 3 32 32 H 1.08995 * 109.46271 * 240.02504 * 2 1 3 33 33 H 1.08998 * 109.49445 * 61.41643 * 3 2 1 34 34 H 1.08999 * 109.49747 * 301.31985 * 3 2 1 35 35 H 1.09004 * 109.59148 * 185.57828 * 4 3 2 36 36 H 1.09001 * 109.70933 * 65.21971 * 4 3 2 37 37 H 1.08997 * 109.46862 * 35.09650 * 11 10 8 38 38 H 1.08998 * 109.47256 * 155.09017 * 11 10 8 39 39 H 0.96999 * 119.99389 * 180.02562 * 15 14 12 40 40 H 1.09000 * 109.47059 * 329.99232 * 20 10 8 41 41 H 1.09004 * 109.46734 * 209.99937 * 20 10 8 42 42 H 1.08000 * 120.41477 * 0.02562 * 22 21 20 43 43 H 1.08003 * 120.78711 * 180.22871 * 23 22 21 44 44 H 1.07993 * 120.41984 * 179.78646 * 24 23 22 45 45 H 1.08004 * 119.61833 * 180.25422 * 25 24 23 46 46 H 1.09004 * 109.58091 * 65.92824 * 27 5 4 47 47 H 1.08991 * 109.59415 * 186.35809 * 27 5 4 48 48 H 1.09000 * 109.49998 * 298.58024 * 28 2 1 49 49 H 1.09000 * 109.49693 * 58.67342 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4430 0.0000 4 6 3.5713 1.4393 -0.0346 5 7 4.0676 0.6239 1.0824 6 6 4.9616 1.1277 1.9562 7 8 5.4346 2.2300 1.7726 8 6 5.3702 0.3288 3.1513 9 8 6.2635 -0.4874 3.0590 10 7 4.7468 0.5149 4.3316 11 6 3.7469 1.5764 4.4726 12 6 4.4370 2.8769 4.7940 13 1 5.5127 2.9095 4.8847 14 6 3.6949 4.0251 4.9734 15 7 2.3850 3.9854 4.8636 16 14 4.5503 5.6371 5.3726 17 1 5.4890 5.9843 4.2755 18 1 3.5369 6.7131 5.5154 19 1 5.3051 5.4955 6.6436 20 6 5.0689 -0.3443 5.4737 21 6 6.1984 0.2686 6.2606 22 6 5.9158 1.0628 7.3561 23 6 6.9624 1.6182 8.0757 24 6 8.2598 1.3611 7.6589 25 6 8.4651 0.5570 6.5541 26 7 7.4450 0.0414 5.8959 27 6 3.5753 -0.7530 1.2254 28 6 2.0396 -0.7228 1.2490 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8932 -0.5134 -0.8902 33 1 1.6975 1.9497 0.9023 34 1 1.6575 1.9640 -0.8778 35 1 3.9416 2.4596 0.0651 36 1 3.9167 1.0157 -0.9777 37 1 3.1930 1.6799 3.5396 38 1 3.0579 1.3218 5.2779 39 1 1.8631 4.7932 4.9894 40 1 5.3684 -1.3289 5.1145 41 1 4.1917 -0.4423 6.1133 42 1 4.8927 1.2451 7.6499 43 1 6.7718 2.2398 8.9381 44 1 9.0991 1.7803 8.1937 45 1 9.4726 0.3485 6.2255 46 1 3.9188 -1.3531 0.3827 47 1 3.9481 -1.1796 2.1565 48 1 1.6972 -0.1957 2.1395 49 1 1.6570 -1.7434 1.2602 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274541281.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:15 Heat of formation + Delta-G solvation = -54.494736 kcal Electronic energy + Delta-G solvation = -32073.314631 eV Core-core repulsion = 27999.416261 eV Total energy + Delta-G solvation = -4073.898371 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.98457 -41.00623 -39.81827 -38.58648 -37.04311 -34.96065 -34.72777 -33.34566 -32.76093 -32.14881 -29.58786 -29.46643 -28.07631 -25.77415 -24.90016 -24.36157 -24.27353 -23.48636 -22.49566 -21.05818 -19.82066 -18.76831 -18.67065 -18.06562 -17.58726 -17.48457 -17.07704 -16.58142 -16.48283 -15.98903 -15.77480 -15.58733 -15.31869 -15.11564 -14.86963 -14.53143 -14.47218 -14.25125 -14.19155 -14.13271 -13.93284 -13.60341 -13.54970 -13.24097 -12.86584 -12.78713 -12.71580 -12.67026 -12.57168 -12.47263 -12.19759 -12.06710 -11.84438 -11.81144 -11.36484 -11.30444 -10.74334 -10.65333 -10.53301 -10.36186 -9.90739 -9.77579 -9.64279 -8.23756 -6.31665 0.18347 0.46300 1.15232 1.21327 1.30424 1.35143 1.42228 1.71885 2.34954 2.47734 3.00915 3.08915 3.28798 3.45078 3.74826 3.84332 3.87453 3.88642 4.04229 4.09425 4.22870 4.28890 4.30437 4.37549 4.45718 4.51064 4.54462 4.71179 4.74487 4.76940 4.78631 4.81953 4.90405 4.92331 4.95744 5.05218 5.10778 5.14741 5.22392 5.26075 5.32936 5.40329 5.49191 5.51285 5.58556 5.70358 5.86464 6.00568 6.09920 6.22737 6.69956 6.85158 6.92284 7.17507 7.36273 8.82467 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010390 B = 0.004621 C = 0.003712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2694.302662 B = 6058.142513 C = 7540.432865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.085 4.085 3 C -0.123 4.123 4 C 0.109 3.891 5 N -0.596 5.596 6 C 0.518 3.482 7 O -0.550 6.550 8 C 0.518 3.482 9 O -0.545 6.545 10 N -0.572 5.572 11 C 0.258 3.742 12 C -0.520 4.520 13 H 0.030 0.970 14 C 0.032 3.968 15 N -0.911 5.911 16 Si 0.936 3.064 17 H -0.294 1.294 18 H -0.273 1.273 19 H -0.263 1.263 20 C 0.166 3.834 21 C 0.095 3.905 22 C -0.146 4.146 23 C -0.088 4.088 24 C -0.168 4.168 25 C 0.071 3.929 26 N -0.497 5.497 27 C 0.105 3.895 28 C -0.124 4.124 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.040 0.960 32 H 0.094 0.906 33 H 0.040 0.960 34 H 0.097 0.903 35 H 0.061 0.939 36 H 0.097 0.903 37 H 0.017 0.983 38 H 0.047 0.953 39 H 0.267 0.733 40 H 0.093 0.907 41 H 0.121 0.879 42 H 0.140 0.860 43 H 0.158 0.842 44 H 0.166 0.834 45 H 0.169 0.831 46 H 0.100 0.900 47 H 0.067 0.933 48 H 0.048 0.952 49 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.565 -10.419 -2.223 10.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.103 4.103 3 C -0.161 4.161 4 C -0.012 4.012 5 N -0.331 5.331 6 C 0.301 3.699 7 O -0.427 6.427 8 C 0.300 3.700 9 O -0.423 6.423 10 N -0.303 5.303 11 C 0.138 3.862 12 C -0.559 4.559 13 H 0.049 0.951 14 C -0.169 4.169 15 N -0.551 5.551 16 Si 0.763 3.237 17 H -0.221 1.221 18 H -0.198 1.198 19 H -0.188 1.188 20 C 0.043 3.957 21 C -0.043 4.043 22 C -0.166 4.166 23 C -0.114 4.114 24 C -0.188 4.188 25 C -0.086 4.086 26 N -0.207 5.207 27 C -0.017 4.017 28 C -0.162 4.162 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.059 0.941 32 H 0.113 0.887 33 H 0.059 0.941 34 H 0.116 0.884 35 H 0.080 0.920 36 H 0.115 0.885 37 H 0.035 0.965 38 H 0.065 0.935 39 H 0.076 0.924 40 H 0.112 0.888 41 H 0.139 0.861 42 H 0.158 0.842 43 H 0.176 0.824 44 H 0.183 0.817 45 H 0.187 0.813 46 H 0.118 0.882 47 H 0.085 0.915 48 H 0.067 0.933 49 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.899 -10.682 -3.071 11.275 hybrid contribution 0.498 2.093 1.018 2.381 sum -1.400 -8.588 -2.053 8.941 Atomic orbital electron populations 1.21776 0.93867 1.02543 1.01721 1.21114 0.96579 0.94296 0.98342 1.21958 0.93077 0.98493 1.02621 1.21791 0.95346 0.95618 0.88447 1.48176 1.41250 1.15792 1.27845 1.20402 0.79722 0.85662 0.84148 1.90731 1.55124 1.20973 1.75836 1.20123 0.82604 0.82223 0.85023 1.90725 1.29923 1.36174 1.85519 1.48178 1.39699 1.33734 1.08703 1.19158 0.86049 0.83740 0.97273 1.21266 0.92301 0.94142 1.48183 0.95130 1.25354 0.95327 1.01028 0.95165 1.69946 1.05222 1.29728 1.50172 0.85945 0.78565 0.80561 0.78654 1.22070 1.19783 1.18786 1.20488 0.95435 0.93173 0.86560 1.21615 0.92534 0.96451 0.93732 1.22128 1.01505 0.96965 0.96043 1.21933 0.92537 0.97158 0.99749 1.22452 0.98694 0.99340 0.98320 1.23165 0.98373 0.94461 0.92639 1.67505 1.00218 1.23249 1.29751 1.22098 0.95976 0.80543 1.03086 1.22064 0.92799 1.02682 0.98666 0.91668 0.91076 0.94102 0.88747 0.94129 0.88449 0.92022 0.88512 0.96507 0.93535 0.92423 0.88829 0.86109 0.84212 0.82418 0.81677 0.81349 0.88222 0.91496 0.93332 0.87673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 9.19 71.98 0.66 -1.73 16 2 C -0.08 -1.64 2.68 -10.77 -0.03 -1.67 16 3 C -0.12 -3.10 5.36 30.67 0.16 -2.93 16 4 C 0.11 3.30 6.41 86.36 0.55 3.85 16 5 N -0.60 -21.12 2.97 -819.66 -2.43 -23.55 16 6 C 0.52 24.03 5.69 87.27 0.50 24.53 16 7 O -0.55 -30.24 16.53 -3.23 -0.05 -30.29 16 8 C 0.52 23.96 5.42 87.27 0.47 24.44 16 9 O -0.55 -26.42 16.70 -3.25 -0.05 -26.47 16 10 N -0.57 -24.92 2.45 -832.09 -2.04 -26.96 16 11 C 0.26 12.53 5.02 85.63 0.43 12.96 16 12 C -0.52 -28.69 9.34 25.60 0.24 -28.45 16 13 H 0.03 1.84 7.81 -2.91 -0.02 1.82 16 14 C 0.03 1.75 5.46 84.66 0.46 2.22 16 15 N -0.91 -50.72 13.29 21.45 0.28 -50.43 16 16 Si 0.94 45.06 29.54 68.60 2.03 47.09 16 17 H -0.29 -15.03 7.11 99.48 0.71 -14.32 16 18 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 19 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 20 C 0.17 6.10 5.72 85.63 0.49 6.59 16 21 C 0.09 3.66 6.36 42.55 0.27 3.93 16 22 C -0.15 -5.05 9.72 22.36 0.22 -4.83 16 23 C -0.09 -2.59 10.18 22.47 0.23 -2.36 16 24 C -0.17 -4.66 10.11 22.36 0.23 -4.43 16 25 C 0.07 2.32 11.18 84.67 0.95 3.27 16 26 N -0.50 -19.99 10.27 -183.88 -1.89 -21.88 16 27 C 0.10 2.81 6.38 86.51 0.55 3.37 16 28 C -0.12 -2.74 5.38 30.82 0.17 -2.57 16 29 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.06 2.27 7.04 -2.39 -0.02 2.25 16 36 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.02 0.89 6.98 -2.39 -0.02 0.87 16 38 H 0.05 2.21 7.83 -2.39 -0.02 2.19 16 39 H 0.27 14.17 8.31 -92.71 -0.77 13.40 16 40 H 0.09 3.34 7.50 -2.39 -0.02 3.32 16 41 H 0.12 3.63 7.76 -2.39 -0.02 3.61 16 42 H 0.14 4.58 8.06 -2.91 -0.02 4.56 16 43 H 0.16 3.62 8.06 -2.91 -0.02 3.60 16 44 H 0.17 3.20 8.06 -2.91 -0.02 3.18 16 45 H 0.17 4.52 8.06 -2.91 -0.02 4.49 16 46 H 0.10 2.13 8.14 -2.38 -0.02 2.11 16 47 H 0.07 2.02 6.29 -2.39 -0.02 2.00 16 48 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 49 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -77.02 405.85 3.33 -73.70 By element: Atomic # 1 Polarization: 21.69 SS G_CDS: 0.94 Total: 22.62 kcal Atomic # 6 Polarization: 29.63 SS G_CDS: 6.55 Total: 36.18 kcal Atomic # 7 Polarization: -116.74 SS G_CDS: -6.08 Total: -122.82 kcal Atomic # 8 Polarization: -56.66 SS G_CDS: -0.11 Total: -56.77 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -77.02 3.33 -73.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274541281.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.203 kcal (2) G-P(sol) polarization free energy of solvation -77.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds