Wall clock time and date at job start Wed Apr 1 2020 05:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38287 * 119.53331 * 2 1 4 4 C 1.38488 * 119.24510 * 180.25612 * 3 2 1 5 5 C 1.50688 * 120.82554 * 179.77651 * 4 3 2 6 6 C 1.39343 * 118.34865 * 359.49876 * 4 3 2 7 7 N 1.39760 * 120.48807 * 180.27533 * 6 4 3 8 8 C 1.34774 * 119.99709 * 295.71420 * 7 6 4 9 9 O 1.21370 * 120.00626 * 3.59004 * 8 7 6 10 10 C 1.49357 * 119.99574 * 183.59695 * 8 7 6 11 11 O 1.21361 * 119.99997 * 354.26362 * 10 8 7 12 12 N 1.34774 * 119.99867 * 174.27149 * 10 8 7 13 13 C 1.46500 * 120.00358 * 4.17205 * 12 10 8 14 14 C 1.50702 * 109.46869 * 83.27681 * 13 12 10 15 15 H 1.07994 * 120.00052 * 359.97438 * 14 13 12 16 16 C 1.37876 * 119.99908 * 180.02562 * 14 13 12 17 17 N 1.31517 * 120.00030 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00028 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47242 * 89.99974 * 18 16 14 20 20 H 1.48503 * 109.47069 * 209.99645 * 18 16 14 21 21 H 1.48499 * 109.47021 * 329.99471 * 18 16 14 22 22 C 1.46508 * 119.99726 * 184.17674 * 12 10 8 23 23 C 1.52994 * 109.47051 * 94.78932 * 22 12 10 24 24 C 1.53008 * 117.49739 * 245.87640 * 23 22 12 25 25 C 1.53007 * 117.49821 * 177.25438 * 23 22 12 26 26 C 1.38897 * 119.01724 * 0.25466 * 6 4 3 27 27 C 1.50708 * 119.67252 * 179.97438 * 26 6 4 28 28 N 1.31811 * 120.65821 * 0.02562 * 26 6 4 29 29 H 1.08999 * 109.46885 * 270.24735 * 1 2 3 30 30 H 1.09000 * 109.47273 * 30.25431 * 1 2 3 31 31 H 1.09004 * 109.46669 * 150.25471 * 1 2 3 32 32 H 1.08005 * 120.37443 * 0.02562 * 3 2 1 33 33 H 1.09004 * 109.47372 * 273.67728 * 5 4 3 34 34 H 1.09000 * 109.47782 * 153.67480 * 5 4 3 35 35 H 1.08999 * 109.47181 * 33.67631 * 5 4 3 36 36 H 0.96996 * 119.99566 * 115.71241 * 7 6 4 37 37 H 1.09002 * 109.47573 * 203.27713 * 13 12 10 38 38 H 1.08998 * 109.47132 * 323.27882 * 13 12 10 39 39 H 0.96997 * 120.00050 * 179.97438 * 17 16 14 40 40 H 1.09000 * 109.46866 * 214.78492 * 22 12 10 41 41 H 1.08993 * 109.47136 * 334.78501 * 22 12 10 42 42 H 1.09002 * 115.55654 * 31.58324 * 23 22 12 43 43 H 1.08995 * 117.49596 * 0.02562 * 24 23 22 44 44 H 1.08996 * 117.49666 * 145.02313 * 24 23 22 45 45 H 1.09000 * 117.50052 * 214.97406 * 25 23 22 46 46 H 1.08995 * 117.49693 * 359.97438 * 25 23 22 47 47 H 1.09002 * 109.46887 * 94.79391 * 27 26 6 48 48 H 1.08998 * 109.47106 * 214.79545 * 27 26 6 49 49 H 1.09004 * 109.46822 * 334.79493 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1887 1.2032 0.0000 4 6 3.5735 1.1962 -0.0054 5 6 4.3522 2.4863 -0.0106 6 6 4.2290 -0.0334 0.0001 7 7 5.6254 -0.0925 0.0008 8 6 6.3204 0.3804 -1.0527 9 8 5.7380 0.9165 -1.9727 10 6 7.8073 0.2446 -1.0880 11 8 8.3994 -0.1963 -0.1247 12 7 8.4916 0.6118 -2.1895 13 6 7.7884 1.2288 -3.3170 14 6 7.6228 2.7043 -3.0590 15 1 8.0029 3.1389 -2.1463 16 6 6.9851 3.4992 -3.9877 17 7 6.5217 2.9698 -5.0988 18 14 6.7792 5.3280 -3.6676 19 1 7.9504 6.0608 -4.2121 20 1 5.5413 5.8104 -4.3311 21 1 6.6820 5.5667 -2.2051 22 6 9.9387 0.3939 -2.2595 23 6 10.2209 -0.9333 -2.9661 24 6 10.8604 -2.0514 -2.1402 25 6 11.6850 -1.3134 -3.1969 26 6 3.4742 -1.1993 0.0053 27 6 4.1679 -2.5372 0.0106 28 7 2.1571 -1.1473 0.0045 29 1 -0.3633 0.0044 1.0277 30 1 -0.3634 0.8877 -0.5178 31 1 -0.3633 -0.8923 -0.5099 32 1 1.6471 2.1377 0.0004 33 1 4.4795 2.8298 -1.0373 34 1 5.3303 2.3223 0.4415 35 1 3.8100 3.2403 0.5600 36 1 6.0942 -0.4739 0.7594 37 1 8.3659 1.0821 -4.2297 38 1 6.8073 0.7673 -3.4297 39 1 6.0727 3.5290 -5.7520 40 1 10.4021 1.2080 -2.8168 41 1 10.3506 0.3634 -1.2509 42 1 9.4996 -1.2216 -3.7308 43 1 11.0795 -1.8414 -1.0934 44 1 10.5597 -3.0754 -2.3614 45 1 11.9267 -1.8521 -4.1132 46 1 12.4469 -0.6176 -2.8457 47 1 4.2592 -2.8950 1.0362 48 1 3.5857 -3.2507 -0.5726 49 1 5.1604 -2.4336 -0.4279 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411401391.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:41 Heat of formation + Delta-G solvation = 1.444877 kcal Electronic energy + Delta-G solvation = -31372.995414 eV Core-core repulsion = 27301.522767 eV Total energy + Delta-G solvation = -4071.472647 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 35.31 seconds Orbital eigenvalues (eV) -40.95772 -39.78422 -38.11090 -36.92458 -35.61670 -34.41004 -33.93693 -32.42410 -32.05207 -28.96000 -28.06472 -27.54610 -27.06325 -26.20648 -23.64329 -22.73429 -22.15224 -21.50007 -20.97104 -20.21705 -19.37623 -17.65834 -16.92184 -16.73881 -16.51890 -16.15857 -15.19409 -14.95404 -14.85848 -14.75398 -14.44609 -14.22371 -14.03309 -13.71353 -13.32462 -13.25523 -13.04767 -13.01875 -12.80564 -12.45874 -12.33485 -12.15293 -12.03678 -12.01637 -11.68961 -11.62381 -11.47298 -11.44604 -11.33556 -10.94001 -10.88893 -10.48559 -10.28720 -10.02916 -9.94919 -9.74255 -9.62340 -9.36464 -9.06370 -8.77304 -8.30732 -8.26063 -7.84650 -6.05180 -4.08004 1.08307 1.37083 2.11582 2.88448 3.26700 3.33897 3.36252 3.73163 3.86818 3.92962 4.15016 4.28009 4.42647 4.69154 4.75347 4.95923 5.01623 5.13888 5.14925 5.24972 5.31164 5.35477 5.48799 5.51406 5.53351 5.58427 5.62787 5.66437 5.69268 5.77699 5.85363 5.94160 5.96944 6.05245 6.08447 6.11228 6.20884 6.28091 6.32915 6.46390 6.47619 6.54854 6.69463 6.92577 7.32992 7.42961 7.53362 7.83767 8.07121 8.09380 8.18184 8.38779 8.67017 8.94249 9.54751 11.03611 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.008517 B = 0.004520 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3286.858549 B = 6192.708774 C = 8680.108016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.126 3.874 3 C -0.173 4.173 4 C -0.015 4.015 5 C -0.117 4.117 6 C 0.086 3.914 7 N -0.664 5.664 8 C 0.493 3.507 9 O -0.437 6.437 10 C 0.510 3.490 11 O -0.559 6.559 12 N -0.555 5.555 13 C 0.221 3.779 14 C -0.518 4.518 15 H 0.054 0.946 16 C 0.070 3.930 17 N -0.888 5.888 18 Si 0.890 3.110 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.275 1.275 22 C 0.144 3.856 23 C -0.163 4.163 24 C -0.176 4.176 25 C -0.177 4.177 26 C 0.133 3.867 27 C -0.103 4.103 28 N -0.483 5.483 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.135 0.865 33 H 0.097 0.903 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.414 0.586 37 H 0.031 0.969 38 H 0.076 0.924 39 H 0.262 0.738 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.106 0.894 43 H 0.095 0.905 44 H 0.088 0.912 45 H 0.092 0.908 46 H 0.093 0.907 47 H 0.077 0.923 48 H 0.078 0.922 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.268 -7.670 9.580 12.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.012 4.012 3 C -0.193 4.193 4 C -0.024 4.024 5 C -0.174 4.174 6 C -0.009 4.009 7 N -0.318 5.318 8 C 0.275 3.725 9 O -0.305 6.305 10 C 0.293 3.707 11 O -0.441 6.441 12 N -0.285 5.285 13 C 0.102 3.898 14 C -0.556 4.556 15 H 0.072 0.928 16 C -0.132 4.132 17 N -0.527 5.527 18 Si 0.718 3.282 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.200 1.200 22 C 0.021 3.979 23 C -0.182 4.182 24 C -0.213 4.213 25 C -0.214 4.214 26 C -0.007 4.007 27 C -0.160 4.160 28 N -0.195 5.195 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.153 0.847 33 H 0.115 0.885 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.252 0.748 37 H 0.049 0.951 38 H 0.093 0.907 39 H 0.071 0.929 40 H 0.105 0.895 41 H 0.099 0.901 42 H 0.124 0.876 43 H 0.114 0.886 44 H 0.106 0.894 45 H 0.110 0.890 46 H 0.112 0.888 47 H 0.096 0.904 48 H 0.097 0.903 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.908 -8.185 9.124 12.866 hybrid contribution 0.540 1.809 0.271 1.907 sum -3.369 -6.376 9.395 11.843 Atomic orbital electron populations 1.20667 0.88869 1.03414 1.02758 1.21191 0.96833 0.88149 0.94978 1.21722 0.93488 0.99327 1.04772 1.20518 0.93829 0.95343 0.92698 1.20858 0.99261 0.92743 1.04511 1.18142 0.83823 0.93140 1.05751 1.43001 1.03367 1.63973 1.21483 1.20461 0.89091 0.80156 0.82807 1.90941 1.70432 1.35902 1.33186 1.19721 0.87566 0.79679 0.83782 1.90642 1.70361 1.47878 1.35198 1.48209 1.07562 1.55382 1.17332 1.20120 0.94016 0.93561 0.82091 1.21200 1.37531 0.92232 1.04681 0.92825 1.24795 0.95137 0.98304 0.95009 1.69917 1.38308 1.35624 1.08819 0.86635 0.77616 0.85598 0.78371 1.20708 1.21153 1.19974 1.21029 0.81149 0.94960 1.00768 1.22754 0.96063 0.96773 1.02637 1.22991 1.04409 0.96860 0.97080 1.22899 0.94027 1.03823 1.00694 1.21348 0.89189 0.94848 0.95299 1.20668 1.00087 0.92266 1.02970 1.67318 1.08380 1.29218 1.14552 0.90634 0.90758 0.90581 0.84728 0.88461 0.91410 0.91499 0.74773 0.95064 0.90663 0.92850 0.89525 0.90134 0.87571 0.88645 0.89369 0.88997 0.88817 0.90405 0.90324 0.90613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.98 10.16 36.01 0.37 -0.62 16 2 C 0.13 1.73 6.78 -82.56 -0.56 1.17 16 3 C -0.17 -2.43 9.45 -39.47 -0.37 -2.80 16 4 C -0.01 -0.24 5.57 -104.12 -0.58 -0.82 16 5 C -0.12 -1.91 8.59 36.00 0.31 -1.60 16 6 C 0.09 1.40 5.61 -83.59 -0.47 0.93 16 7 N -0.66 -10.72 3.53 -10.20 -0.04 -10.76 16 8 C 0.49 9.74 6.63 -11.63 -0.08 9.66 16 9 O -0.44 -10.12 10.57 5.48 0.06 -10.07 16 10 C 0.51 10.34 7.67 -11.63 -0.09 10.25 16 11 O -0.56 -11.20 15.98 5.49 0.09 -11.11 16 12 N -0.56 -11.53 2.48 -175.60 -0.43 -11.96 16 13 C 0.22 5.38 4.79 -5.19 -0.02 5.36 16 14 C -0.52 -13.75 8.37 -34.44 -0.29 -14.04 16 15 H 0.05 1.44 7.81 -52.49 -0.41 1.03 16 16 C 0.07 1.91 5.46 -17.82 -0.10 1.82 16 17 N -0.89 -25.44 13.29 55.43 0.74 -24.70 16 18 Si 0.89 21.16 29.54 -169.99 -5.02 16.13 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 22 C 0.14 2.53 5.74 -4.04 -0.02 2.51 16 23 C -0.16 -2.50 6.01 -90.62 -0.54 -3.05 16 24 C -0.18 -2.33 10.18 -26.72 -0.27 -2.60 16 25 C -0.18 -2.19 10.25 -26.72 -0.27 -2.46 16 26 C 0.13 2.01 6.80 -82.35 -0.56 1.45 16 27 C -0.10 -1.25 10.01 36.01 0.36 -0.89 16 28 N -0.48 -7.34 10.18 -5.57 -0.06 -7.39 16 29 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.62 8.08 -51.93 -0.42 0.20 16 31 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.13 1.55 8.06 -52.48 -0.42 1.12 16 33 H 0.10 1.89 7.53 -51.93 -0.39 1.50 16 34 H 0.07 1.14 7.01 -51.93 -0.36 0.77 16 35 H 0.07 0.89 8.12 -51.93 -0.42 0.47 16 36 H 0.41 5.82 8.30 -40.82 -0.34 5.48 16 37 H 0.03 0.80 8.02 -51.93 -0.42 0.38 16 38 H 0.08 2.01 5.37 -51.93 -0.28 1.74 16 39 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 40 H 0.09 1.52 8.11 -51.93 -0.42 1.10 16 41 H 0.08 1.38 6.98 -51.93 -0.36 1.02 16 42 H 0.11 1.75 8.14 -51.93 -0.42 1.33 16 43 H 0.10 1.28 8.04 -51.93 -0.42 0.86 16 44 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 45 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 46 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 47 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 48 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 49 H 0.08 0.95 7.30 -51.93 -0.38 0.57 16 LS Contribution 407.12 15.07 6.14 6.14 Total: -1.00 -31.09 407.12 -9.29 -40.38 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -7.56 Total: 9.08 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: -3.20 Total: 4.26 kcal Atomic # 7 Polarization: -55.02 SS G_CDS: 0.21 Total: -54.81 kcal Atomic # 8 Polarization: -21.32 SS G_CDS: 0.15 Total: -21.17 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -31.09 -9.29 -40.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411401391.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.821 kcal (2) G-P(sol) polarization free energy of solvation -31.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 35.31 seconds