Wall clock time and date at job start Wed Apr 1 2020 05:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38287 * 119.53331 * 2 1 4 4 C 1.38488 * 119.24510 * 180.25612 * 3 2 1 5 5 C 1.50688 * 120.82554 * 179.77651 * 4 3 2 6 6 C 1.39343 * 118.34865 * 359.49876 * 4 3 2 7 7 N 1.39760 * 120.48807 * 180.27533 * 6 4 3 8 8 C 1.34774 * 119.99709 * 295.71420 * 7 6 4 9 9 O 1.21370 * 120.00626 * 3.59004 * 8 7 6 10 10 C 1.49357 * 119.99574 * 183.59695 * 8 7 6 11 11 O 1.21361 * 119.99997 * 354.26362 * 10 8 7 12 12 N 1.34774 * 119.99867 * 174.27149 * 10 8 7 13 13 C 1.46500 * 120.00358 * 4.17205 * 12 10 8 14 14 C 1.50702 * 109.46869 * 83.27681 * 13 12 10 15 15 H 1.07994 * 120.00052 * 359.97438 * 14 13 12 16 16 C 1.37876 * 119.99908 * 180.02562 * 14 13 12 17 17 N 1.31517 * 120.00030 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00028 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47242 * 89.99974 * 18 16 14 20 20 H 1.48503 * 109.47069 * 209.99645 * 18 16 14 21 21 H 1.48499 * 109.47021 * 329.99471 * 18 16 14 22 22 C 1.46508 * 119.99726 * 184.17674 * 12 10 8 23 23 C 1.52994 * 109.47051 * 94.78932 * 22 12 10 24 24 C 1.53008 * 117.49739 * 245.87640 * 23 22 12 25 25 C 1.53007 * 117.49821 * 177.25438 * 23 22 12 26 26 C 1.38897 * 119.01724 * 0.25466 * 6 4 3 27 27 C 1.50708 * 119.67252 * 179.97438 * 26 6 4 28 28 N 1.31811 * 120.65821 * 0.02562 * 26 6 4 29 29 H 1.08999 * 109.46885 * 270.24735 * 1 2 3 30 30 H 1.09000 * 109.47273 * 30.25431 * 1 2 3 31 31 H 1.09004 * 109.46669 * 150.25471 * 1 2 3 32 32 H 1.08005 * 120.37443 * 0.02562 * 3 2 1 33 33 H 1.09004 * 109.47372 * 273.67728 * 5 4 3 34 34 H 1.09000 * 109.47782 * 153.67480 * 5 4 3 35 35 H 1.08999 * 109.47181 * 33.67631 * 5 4 3 36 36 H 0.96996 * 119.99566 * 115.71241 * 7 6 4 37 37 H 1.09002 * 109.47573 * 203.27713 * 13 12 10 38 38 H 1.08998 * 109.47132 * 323.27882 * 13 12 10 39 39 H 0.96997 * 120.00050 * 179.97438 * 17 16 14 40 40 H 1.09000 * 109.46866 * 214.78492 * 22 12 10 41 41 H 1.08993 * 109.47136 * 334.78501 * 22 12 10 42 42 H 1.09002 * 115.55654 * 31.58324 * 23 22 12 43 43 H 1.08995 * 117.49596 * 0.02562 * 24 23 22 44 44 H 1.08996 * 117.49666 * 145.02313 * 24 23 22 45 45 H 1.09000 * 117.50052 * 214.97406 * 25 23 22 46 46 H 1.08995 * 117.49693 * 359.97438 * 25 23 22 47 47 H 1.09002 * 109.46887 * 94.79391 * 27 26 6 48 48 H 1.08998 * 109.47106 * 214.79545 * 27 26 6 49 49 H 1.09004 * 109.46822 * 334.79493 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1887 1.2032 0.0000 4 6 3.5735 1.1962 -0.0054 5 6 4.3522 2.4863 -0.0106 6 6 4.2290 -0.0334 0.0001 7 7 5.6254 -0.0925 0.0008 8 6 6.3204 0.3804 -1.0527 9 8 5.7380 0.9165 -1.9727 10 6 7.8073 0.2446 -1.0880 11 8 8.3994 -0.1963 -0.1247 12 7 8.4916 0.6118 -2.1895 13 6 7.7884 1.2288 -3.3170 14 6 7.6228 2.7043 -3.0590 15 1 8.0029 3.1389 -2.1463 16 6 6.9851 3.4992 -3.9877 17 7 6.5217 2.9698 -5.0988 18 14 6.7792 5.3280 -3.6676 19 1 7.9504 6.0608 -4.2121 20 1 5.5413 5.8104 -4.3311 21 1 6.6820 5.5667 -2.2051 22 6 9.9387 0.3939 -2.2595 23 6 10.2209 -0.9333 -2.9661 24 6 10.8604 -2.0514 -2.1402 25 6 11.6850 -1.3134 -3.1969 26 6 3.4742 -1.1993 0.0053 27 6 4.1679 -2.5372 0.0106 28 7 2.1571 -1.1473 0.0045 29 1 -0.3633 0.0044 1.0277 30 1 -0.3634 0.8877 -0.5178 31 1 -0.3633 -0.8923 -0.5099 32 1 1.6471 2.1377 0.0004 33 1 4.4795 2.8298 -1.0373 34 1 5.3303 2.3223 0.4415 35 1 3.8100 3.2403 0.5600 36 1 6.0942 -0.4739 0.7594 37 1 8.3659 1.0821 -4.2297 38 1 6.8073 0.7673 -3.4297 39 1 6.0727 3.5290 -5.7520 40 1 10.4021 1.2080 -2.8168 41 1 10.3506 0.3634 -1.2509 42 1 9.4996 -1.2216 -3.7308 43 1 11.0795 -1.8414 -1.0934 44 1 10.5597 -3.0754 -2.3614 45 1 11.9267 -1.8521 -4.1132 46 1 12.4469 -0.6176 -2.8457 47 1 4.2592 -2.8950 1.0362 48 1 3.5857 -3.2507 -0.5726 49 1 5.1604 -2.4336 -0.4279 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411401391.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:57 Heat of formation + Delta-G solvation = -15.845761 kcal Electronic energy + Delta-G solvation = -31373.745192 eV Core-core repulsion = 27301.522767 eV Total energy + Delta-G solvation = -4072.222425 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 28.02 seconds Orbital eigenvalues (eV) -42.30446 -41.20681 -39.56263 -38.26457 -37.06889 -35.95773 -35.08834 -34.42020 -33.24743 -29.95223 -29.76857 -28.88124 -28.56832 -27.46990 -25.32933 -24.39860 -23.18539 -22.64193 -22.21808 -21.48554 -20.84072 -19.18289 -18.52751 -18.34190 -18.05717 -17.59374 -16.82594 -16.57551 -16.14720 -15.96754 -15.90440 -15.60975 -15.31934 -15.02122 -14.65604 -14.52641 -14.33198 -14.24176 -14.07895 -13.89806 -13.69217 -13.65725 -13.38616 -13.16063 -13.02277 -12.95858 -12.77228 -12.66936 -12.59420 -12.59309 -12.34300 -12.32820 -11.88142 -11.74638 -11.34662 -11.24840 -10.86819 -10.72614 -10.53159 -10.27543 -10.09773 -9.59528 -9.47065 -8.14550 -6.23822 -0.08772 0.18486 0.52725 1.37222 1.38170 1.42585 1.48299 2.23211 2.38856 2.58138 2.63757 2.95496 3.19043 3.23401 3.43437 3.58058 3.66194 3.81507 4.00225 4.06951 4.11951 4.21804 4.34718 4.35231 4.52174 4.55047 4.61223 4.61909 4.67186 4.69955 4.74904 4.80784 4.82766 4.86872 4.93666 5.02428 5.07252 5.11262 5.18672 5.23696 5.25056 5.28051 5.28878 5.43817 5.53918 5.76037 5.80429 6.06289 6.12421 6.32262 6.79512 6.83609 6.94535 7.12781 7.42652 8.93652 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.008517 B = 0.004520 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3286.858549 B = 6192.708774 C = 8680.108016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.124 3.876 3 C -0.176 4.176 4 C -0.033 4.033 5 C -0.108 4.108 6 C 0.060 3.940 7 N -0.642 5.642 8 C 0.495 3.505 9 O -0.478 6.478 10 C 0.508 3.492 11 O -0.556 6.556 12 N -0.561 5.561 13 C 0.242 3.758 14 C -0.519 4.519 15 H 0.045 0.955 16 C 0.023 3.977 17 N -0.921 5.921 18 Si 0.948 3.052 19 H -0.271 1.271 20 H -0.284 1.284 21 H -0.271 1.271 22 C 0.144 3.856 23 C -0.190 4.190 24 C -0.168 4.168 25 C -0.153 4.153 26 C 0.128 3.872 27 C -0.100 4.100 28 N -0.497 5.497 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.076 0.924 32 H 0.161 0.839 33 H 0.061 0.939 34 H 0.054 0.946 35 H 0.095 0.905 36 H 0.424 0.576 37 H 0.015 0.985 38 H 0.053 0.947 39 H 0.262 0.738 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.095 0.905 44 H 0.099 0.901 45 H 0.108 0.892 46 H 0.107 0.893 47 H 0.102 0.898 48 H 0.084 0.916 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.655 -7.906 10.979 14.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.014 4.014 3 C -0.196 4.196 4 C -0.042 4.042 5 C -0.165 4.165 6 C -0.035 4.035 7 N -0.296 5.296 8 C 0.277 3.723 9 O -0.348 6.348 10 C 0.290 3.710 11 O -0.437 6.437 12 N -0.290 5.290 13 C 0.122 3.878 14 C -0.558 4.558 15 H 0.064 0.936 16 C -0.176 4.176 17 N -0.561 5.561 18 Si 0.774 3.226 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.196 1.196 22 C 0.022 3.978 23 C -0.209 4.209 24 C -0.205 4.205 25 C -0.191 4.191 26 C -0.012 4.012 27 C -0.157 4.157 28 N -0.208 5.208 29 H 0.115 0.885 30 H 0.111 0.889 31 H 0.095 0.905 32 H 0.179 0.821 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.114 0.886 36 H 0.264 0.736 37 H 0.033 0.967 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.100 0.900 41 H 0.104 0.896 42 H 0.107 0.893 43 H 0.114 0.886 44 H 0.118 0.882 45 H 0.126 0.874 46 H 0.125 0.875 47 H 0.120 0.880 48 H 0.102 0.898 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.271 -8.451 10.577 14.196 hybrid contribution 0.608 1.809 -0.091 1.911 sum -3.663 -6.642 10.486 12.941 Atomic orbital electron populations 1.20787 0.85906 1.04362 1.04356 1.21886 0.98797 0.87628 0.93074 1.22034 0.92720 1.00777 1.04056 1.20685 0.94980 0.95018 0.93506 1.20724 0.99321 0.93947 1.02506 1.18342 0.83435 0.93965 1.07711 1.42758 1.03703 1.62497 1.20602 1.20438 0.88906 0.79877 0.83068 1.90931 1.70907 1.38153 1.34850 1.19851 0.87945 0.79549 0.83622 1.90627 1.70478 1.47812 1.34829 1.48145 1.08850 1.55428 1.16582 1.19592 0.92943 0.92676 0.82619 1.21362 1.36996 0.93339 1.04101 0.93627 1.25522 0.94902 1.02386 0.94814 1.70031 1.39286 1.37081 1.09705 0.85710 0.77775 0.80796 0.78337 1.19659 1.20946 1.19553 1.21162 0.79152 0.96259 1.01260 1.22572 0.98156 0.96607 1.03554 1.23046 1.03555 0.96675 0.97186 1.23026 0.92032 1.03015 1.00998 1.21719 0.89467 0.95496 0.94494 1.20719 0.99363 0.91086 1.04522 1.67443 1.08232 1.29983 1.15181 0.88541 0.88939 0.90502 0.82128 0.92064 0.92654 0.88596 0.73612 0.96689 0.92979 0.92870 0.90020 0.89626 0.89331 0.88621 0.88211 0.87366 0.87491 0.87997 0.89766 0.91346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.64 10.16 71.24 0.72 -0.92 16 2 C 0.12 3.19 6.78 42.57 0.29 3.48 16 3 C -0.18 -4.70 9.45 22.34 0.21 -4.49 16 4 C -0.03 -1.05 5.57 -19.54 -0.11 -1.16 16 5 C -0.11 -3.58 8.59 71.23 0.61 -2.97 16 6 C 0.06 1.95 5.61 38.30 0.22 2.16 16 7 N -0.64 -21.07 3.53 -304.52 -1.08 -22.15 16 8 C 0.50 20.23 6.63 87.24 0.58 20.81 16 9 O -0.48 -23.21 10.57 -3.31 -0.03 -23.25 16 10 C 0.51 21.04 7.67 87.24 0.67 21.71 16 11 O -0.56 -22.20 15.98 -3.28 -0.05 -22.26 16 12 N -0.56 -24.03 2.48 -827.85 -2.05 -26.08 16 13 C 0.24 12.34 4.79 85.63 0.41 12.75 16 14 C -0.52 -28.44 8.37 25.60 0.21 -28.23 16 15 H 0.05 2.52 7.81 -2.91 -0.02 2.49 16 16 C 0.02 1.29 5.46 84.65 0.46 1.75 16 17 N -0.92 -54.23 13.29 21.45 0.28 -53.95 16 18 Si 0.95 43.95 29.54 68.60 2.03 45.97 16 19 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 20 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 21 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 22 C 0.14 5.11 5.74 86.38 0.50 5.61 16 23 C -0.19 -5.79 6.01 -10.79 -0.06 -5.86 16 24 C -0.17 -4.17 10.18 30.60 0.31 -3.86 16 25 C -0.15 -3.50 10.25 30.60 0.31 -3.19 16 26 C 0.13 3.79 6.80 42.72 0.29 4.08 16 27 C -0.10 -2.35 10.01 71.24 0.71 -1.64 16 28 N -0.50 -14.49 10.18 -171.53 -1.75 -16.23 16 29 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.09 1.25 8.08 -2.39 -0.02 1.23 16 31 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 32 H 0.16 3.32 8.06 -2.91 -0.02 3.29 16 33 H 0.06 2.48 7.53 -2.39 -0.02 2.46 16 34 H 0.05 1.91 7.01 -2.39 -0.02 1.89 16 35 H 0.10 2.48 8.12 -2.39 -0.02 2.46 16 36 H 0.42 11.91 8.30 -92.71 -0.77 11.14 16 37 H 0.02 0.81 8.02 -2.39 -0.02 0.79 16 38 H 0.05 2.96 5.37 -2.45 -0.01 2.94 16 39 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 40 H 0.08 2.92 8.11 -2.39 -0.02 2.90 16 41 H 0.09 2.92 6.98 -2.39 -0.02 2.91 16 42 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 43 H 0.10 2.39 8.04 -2.39 -0.02 2.37 16 44 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 45 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 46 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 47 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 48 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 49 H 0.07 1.70 7.30 -2.39 -0.02 1.68 16 Total: -1.00 -68.69 407.12 3.89 -64.80 By element: Atomic # 1 Polarization: 32.89 SS G_CDS: 0.20 Total: 33.09 kcal Atomic # 6 Polarization: 13.71 SS G_CDS: 6.34 Total: 20.05 kcal Atomic # 7 Polarization: -113.82 SS G_CDS: -4.59 Total: -118.41 kcal Atomic # 8 Polarization: -45.42 SS G_CDS: -0.09 Total: -45.50 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.97 kcal Total: -68.69 3.89 -64.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411401391.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.953 kcal (2) G-P(sol) polarization free energy of solvation -68.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 28.02 seconds