Wall clock time and date at job start Wed Apr 1 2020 03:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31942 * 119.40949 * 2 1 4 4 C 1.32172 * 121.80474 * 180.28749 * 3 2 1 5 5 O 1.35485 * 119.79657 * 179.70508 * 4 3 2 6 6 C 1.40349 * 120.40041 * 359.72664 * 4 3 2 7 7 C 1.43198 * 120.60044 * 179.97438 * 6 4 3 8 8 N 4.75878 * 139.47163 * 0.33017 * 3 1 2 9 9 C 1.39947 * 118.79973 * 359.97438 * 6 4 3 10 10 C 1.50699 * 120.82835 * 180.02562 * 9 6 4 11 11 C 1.38282 * 119.40207 * 179.74890 * 2 1 3 12 12 C 1.50703 * 120.26787 * 0.02562 * 11 2 1 13 13 C 1.53000 * 109.46912 * 269.72291 * 12 11 2 14 14 C 1.50703 * 109.46912 * 179.97438 * 13 12 11 15 15 O 1.21278 * 119.99985 * 0.02562 * 14 13 12 16 16 N 1.34777 * 120.00161 * 179.97438 * 14 13 12 17 17 C 1.46496 * 120.00271 * 179.97438 * 16 14 13 18 18 C 1.50705 * 109.47066 * 90.00086 * 17 16 14 19 19 H 1.08001 * 119.99987 * 0.02562 * 18 17 16 20 20 C 1.37872 * 120.00127 * 179.97438 * 18 17 16 21 21 N 1.31512 * 120.00059 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00144 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47052 * 60.00305 * 22 20 18 24 24 H 1.48498 * 109.47378 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.47029 * 300.00164 * 22 20 18 26 26 C 1.46505 * 119.99832 * 0.02562 * 16 14 13 27 27 C 1.52999 * 109.47123 * 119.99467 * 26 16 14 28 28 C 1.52999 * 109.46805 * 239.99790 * 26 16 14 29 29 H 1.09002 * 109.47038 * 270.25192 * 1 2 3 30 30 H 1.09006 * 109.46461 * 30.24841 * 1 2 3 31 31 H 1.08991 * 109.47471 * 150.24753 * 1 2 3 32 32 H 0.96701 * 113.99367 * 270.01880 * 5 4 3 33 33 H 1.08993 * 109.47695 * 269.98044 * 10 9 6 34 34 H 1.09005 * 109.46900 * 29.98580 * 10 9 6 35 35 H 1.09006 * 109.46915 * 149.97505 * 10 9 6 36 36 H 1.09002 * 109.47152 * 149.72063 * 12 11 2 37 37 H 1.09001 * 109.46980 * 29.72163 * 12 11 2 38 38 H 1.09001 * 109.47194 * 299.99742 * 13 12 11 39 39 H 1.08992 * 109.47399 * 59.99914 * 13 12 11 40 40 H 1.08998 * 109.47205 * 209.99950 * 17 16 14 41 41 H 1.08997 * 109.47416 * 330.00811 * 17 16 14 42 42 H 0.97001 * 120.00292 * 180.02562 * 21 20 18 43 43 H 1.09000 * 109.47237 * 359.97438 * 26 16 14 44 44 H 1.09000 * 109.46993 * 59.99938 * 27 26 16 45 45 H 1.09000 * 109.46852 * 179.97438 * 27 26 16 46 46 H 1.08993 * 109.47553 * 300.00108 * 27 26 16 47 47 H 1.08996 * 109.47415 * 60.00346 * 28 26 16 48 48 H 1.09005 * 109.46614 * 179.97438 * 28 26 16 49 49 H 1.08997 * 109.47486 * 299.99684 * 28 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1549 1.1494 0.0000 4 6 3.4754 1.2046 -0.0056 5 8 4.0989 2.4075 -0.0114 6 6 4.2356 0.0249 -0.0061 7 6 5.6665 0.0797 -0.0127 8 7 6.8017 0.1232 -0.0178 9 6 3.5699 -1.2061 0.0001 10 6 4.3408 -2.5010 0.0004 11 6 2.1858 -1.2047 0.0053 12 6 1.4248 -2.5055 0.0104 13 6 1.1728 -2.9431 1.4546 14 6 0.4112 -4.2436 1.4598 15 8 0.1011 -4.7688 0.4115 16 7 0.0757 -4.8234 2.6292 17 6 -0.6651 -6.0873 2.6342 18 6 0.3066 -7.2391 2.6314 19 1 1.3697 -7.0488 2.6268 20 6 -0.1614 -8.5360 2.6358 21 7 -1.4559 -8.7678 2.6419 22 14 1.0431 -9.9638 2.6330 23 1 1.9026 -9.8886 3.8416 24 1 0.2923 -11.2449 2.6392 25 1 1.8920 -9.8928 1.4167 26 6 0.4508 -4.1892 3.8955 27 6 -0.8108 -3.8760 4.7024 28 6 1.3456 -5.1380 4.6955 29 1 -0.3633 0.0045 1.0277 30 1 -0.3632 0.8878 -0.5177 31 1 -0.3634 -0.8921 -0.5099 32 1 4.2760 2.7543 -0.8966 33 1 4.5222 -2.8163 -1.0270 34 1 5.2937 -2.3564 0.5097 35 1 3.7643 -3.2670 0.5192 36 1 2.0076 -3.2694 -0.5044 37 1 0.4712 -2.3705 -0.5001 38 1 2.1264 -3.0781 1.9651 39 1 0.5901 -2.1793 1.9694 40 1 -1.2881 -6.1397 3.5271 41 1 -1.2961 -6.1422 1.7471 42 1 -1.7853 -9.6802 2.6453 43 1 0.9916 -3.2648 3.6927 44 1 -1.3512 -4.8006 4.9052 45 1 -0.5316 -3.4046 5.6447 46 1 -1.4482 -3.2002 4.1325 47 1 2.2444 -5.3610 4.1207 48 1 1.6251 -4.6659 5.6375 49 1 0.8052 -6.0626 4.8984 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000523282313.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:19 Heat of formation + Delta-G solvation = -49.824161 kcal Electronic energy + Delta-G solvation = -30498.807529 eV Core-core repulsion = 26425.111689 eV Total energy + Delta-G solvation = -4073.695839 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.10332 -40.74275 -38.78240 -37.85811 -37.50745 -35.71935 -34.95264 -34.62416 -32.33695 -31.64650 -29.73443 -29.48200 -28.42030 -27.91318 -25.93631 -24.48709 -23.53010 -22.59087 -22.25286 -19.80046 -19.44416 -19.32943 -18.60562 -18.49661 -17.96849 -16.93268 -16.79968 -16.37902 -16.09869 -15.53653 -15.08326 -14.90733 -14.77785 -14.75477 -14.68985 -14.43416 -14.20657 -14.11812 -14.05972 -13.88136 -13.69431 -13.51822 -13.33242 -13.26069 -13.17942 -12.97437 -12.83943 -12.75495 -12.72574 -12.59875 -12.52243 -12.42052 -12.16196 -12.04428 -11.78120 -11.58850 -11.46225 -10.66682 -10.56654 -10.56156 -10.42505 -9.73121 -9.32234 -8.14766 -6.25976 -0.60943 -0.05818 1.38912 1.41697 1.47540 1.48472 1.76640 1.96542 2.33261 2.36168 2.48458 2.60142 2.73759 3.15242 3.36975 3.44587 3.60655 3.91921 3.94690 4.02616 4.16067 4.20361 4.32428 4.38318 4.42262 4.47874 4.50816 4.58925 4.68064 4.79479 4.85896 4.90884 4.93431 4.98078 5.00494 5.08784 5.10791 5.17645 5.19390 5.21516 5.25961 5.33024 5.50282 5.55755 5.62270 5.70701 5.96971 6.17695 6.28869 6.47119 6.75493 6.80934 6.95306 7.38095 7.61803 8.91980 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014148 B = 0.002723 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.592950 B =10281.327185 C =10983.687077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.196 3.804 3 N -0.517 5.517 4 C 0.371 3.629 5 O -0.485 6.485 6 C -0.118 4.118 7 C 0.286 3.714 8 N -0.446 5.446 9 C 0.039 3.961 10 C -0.133 4.133 11 C -0.140 4.140 12 C -0.058 4.058 13 C -0.124 4.124 14 C 0.496 3.504 15 O -0.593 6.593 16 N -0.599 5.599 17 C 0.265 3.735 18 C -0.522 4.522 19 H 0.055 0.945 20 C 0.007 3.993 21 N -0.931 5.931 22 Si 0.956 3.044 23 H -0.263 1.263 24 H -0.284 1.284 25 H -0.277 1.277 26 C 0.126 3.874 27 C -0.158 4.158 28 C -0.154 4.154 29 H 0.102 0.898 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.426 0.574 33 H 0.099 0.901 34 H 0.073 0.927 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.093 0.907 38 H 0.107 0.893 39 H 0.119 0.881 40 H 0.022 0.978 41 H -0.006 1.006 42 H 0.264 0.736 43 H 0.118 0.882 44 H 0.035 0.965 45 H 0.092 0.908 46 H 0.061 0.939 47 H 0.045 0.955 48 H 0.085 0.915 49 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.763 20.951 -2.107 22.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.059 3.941 3 N -0.236 5.236 4 C 0.188 3.812 5 O -0.296 6.296 6 C -0.125 4.125 7 C -0.029 4.029 8 N -0.123 5.123 9 C 0.029 3.971 10 C -0.189 4.189 11 C -0.142 4.142 12 C -0.096 4.096 13 C -0.163 4.163 14 C 0.286 3.714 15 O -0.475 6.475 16 N -0.330 5.330 17 C 0.143 3.857 18 C -0.561 4.561 19 H 0.073 0.927 20 C -0.192 4.192 21 N -0.572 5.572 22 Si 0.781 3.219 23 H -0.188 1.188 24 H -0.210 1.210 25 H -0.203 1.203 26 C 0.024 3.976 27 C -0.216 4.216 28 C -0.212 4.212 29 H 0.120 0.880 30 H 0.108 0.892 31 H 0.112 0.888 32 H 0.289 0.711 33 H 0.117 0.883 34 H 0.091 0.909 35 H 0.110 0.890 36 H 0.097 0.903 37 H 0.111 0.889 38 H 0.125 0.875 39 H 0.137 0.863 40 H 0.040 0.960 41 H 0.012 0.988 42 H 0.072 0.928 43 H 0.135 0.865 44 H 0.054 0.946 45 H 0.111 0.889 46 H 0.080 0.920 47 H 0.064 0.936 48 H 0.104 0.896 49 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 7.789 21.375 -2.033 22.841 hybrid contribution 0.428 -1.901 -0.536 2.021 sum 8.217 19.474 -2.569 21.292 Atomic orbital electron populations 1.21090 0.86355 1.05057 1.05105 1.21446 0.98055 0.85846 0.88735 1.67247 1.08561 1.30532 1.17282 1.19043 0.86501 0.84307 0.91325 1.84679 1.76549 1.32286 1.36112 1.16868 0.85110 0.94579 1.15971 1.25173 0.92036 0.92827 0.92868 1.81277 1.12627 1.08190 1.10157 1.20266 0.93250 0.93973 0.89578 1.21100 0.99888 0.93166 1.04786 1.20380 0.92505 0.96561 1.04767 1.20269 1.01082 0.92238 0.95980 1.21687 1.01751 0.93747 0.99158 1.21313 0.79818 0.87343 0.82960 1.90652 1.56999 1.66985 1.32837 1.48373 1.55039 1.23278 1.06301 1.18599 0.91165 0.80592 0.95328 1.21661 0.93359 0.91493 1.49609 0.92694 1.25751 0.96709 1.01540 0.95167 1.70039 1.13946 1.21285 1.51891 0.85642 0.78996 0.78374 0.78865 1.18800 1.20951 1.20301 1.21381 0.96369 0.96516 0.83362 1.22126 0.97272 1.01261 1.00907 1.22092 0.99078 0.99888 1.00122 0.88012 0.89237 0.88789 0.71090 0.88257 0.90861 0.89049 0.90314 0.88898 0.87469 0.86295 0.96036 0.98778 0.92756 0.86473 0.94555 0.88914 0.92005 0.93629 0.89633 0.93996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.42 9.75 71.23 0.69 -0.72 16 2 C 0.20 3.10 6.78 42.55 0.29 3.39 16 3 N -0.52 -9.31 10.28 -296.02 -3.04 -12.35 16 4 C 0.37 6.41 7.76 85.16 0.66 7.07 16 5 O -0.49 -7.21 13.00 -87.85 -1.14 -8.35 16 6 C -0.12 -2.05 5.76 -21.11 -0.12 -2.17 16 7 C 0.29 5.80 13.51 88.33 1.19 7.00 16 8 N -0.45 -10.89 18.54 19.00 0.35 -10.54 16 9 C 0.04 0.63 5.95 -19.41 -0.12 0.52 16 10 C -0.13 -2.04 8.89 71.24 0.63 -1.41 16 11 C -0.14 -2.26 5.14 -19.81 -0.10 -2.36 16 12 C -0.06 -1.11 3.55 29.85 0.11 -1.01 16 13 C -0.12 -2.61 3.88 29.85 0.12 -2.50 16 14 C 0.50 17.64 7.67 87.66 0.67 18.31 16 15 O -0.59 -27.11 15.56 -3.02 -0.05 -27.15 16 16 N -0.60 -22.70 2.39 -802.14 -1.91 -24.62 16 17 C 0.26 13.40 4.59 85.64 0.39 13.80 16 18 C -0.52 -28.49 7.83 25.60 0.20 -28.29 16 19 H 0.05 2.95 7.63 -2.91 -0.02 2.93 16 20 C 0.01 0.37 5.46 84.65 0.46 0.83 16 21 N -0.93 -55.27 13.29 21.44 0.28 -54.99 16 22 Si 0.96 43.98 29.54 68.60 2.03 46.01 16 23 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 24 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 25 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 26 C 0.13 3.46 3.17 44.99 0.14 3.60 16 27 C -0.16 -3.93 9.17 71.98 0.66 -3.27 16 28 C -0.15 -4.49 8.48 71.98 0.61 -3.88 16 29 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 31 H 0.09 1.10 5.90 -2.39 -0.01 1.08 16 32 H 0.43 2.14 9.06 -74.06 -0.67 1.47 16 33 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.07 1.14 7.19 -2.38 -0.02 1.12 16 35 H 0.09 1.45 6.05 -2.38 -0.01 1.43 16 36 H 0.08 1.72 6.75 -2.39 -0.02 1.70 16 37 H 0.09 1.83 5.87 -2.39 -0.01 1.81 16 38 H 0.11 1.92 7.11 -2.39 -0.02 1.90 16 39 H 0.12 1.83 7.79 -2.39 -0.02 1.82 16 40 H 0.02 1.13 6.42 -2.39 -0.02 1.12 16 41 H -0.01 -0.35 7.42 -2.39 -0.02 -0.37 16 42 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 43 H 0.12 2.25 5.77 -2.39 -0.01 2.24 16 44 H 0.04 1.14 6.66 -2.39 -0.02 1.12 16 45 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 46 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 47 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 48 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 49 H 0.04 1.55 6.93 -2.39 -0.02 1.53 16 Total: -1.00 -76.77 403.13 3.34 -73.42 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: 0.33 Total: 9.66 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: 6.50 Total: 8.91 kcal Atomic # 7 Polarization: -98.17 SS G_CDS: -4.32 Total: -102.49 kcal Atomic # 8 Polarization: -34.32 SS G_CDS: -1.19 Total: -35.51 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -76.77 3.34 -73.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000523282313.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.599 kcal (2) G-P(sol) polarization free energy of solvation -76.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds