Wall clock time and date at job start Wed Apr 1 2020 06:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.39749 * 125.83857 * 2 1 4 4 C 1.36115 * 107.82975 * 180.02562 * 3 2 1 5 5 N 1.39473 * 126.21916 * 179.73780 * 4 3 2 6 6 C 1.34779 * 119.99634 * 0.02562 * 5 4 3 7 7 O 1.21288 * 120.00418 * 0.02562 * 6 5 4 8 8 C 1.50839 * 119.99643 * 179.97438 * 6 5 4 9 9 C 1.52839 * 109.17587 * 179.40325 * 8 6 5 10 10 C 1.53412 * 109.63188 * 181.18346 * 9 8 6 11 11 H 1.09088 * 111.05490 * 118.91528 * 10 9 8 12 12 C 1.53409 * 108.89106 * 241.49374 * 10 9 8 13 13 C 1.52705 * 110.06202 * 59.36569 * 12 10 9 14 14 C 1.52704 * 111.04522 * 59.87385 * 13 12 10 15 15 C 1.53391 * 110.05311 * 300.13593 * 14 13 12 16 16 H 1.09095 * 111.04948 * 178.05039 * 15 14 13 17 17 C 1.52844 * 109.17961 * 300.60210 * 8 6 5 18 18 C 1.52077 * 107.32499 * 56.59918 * 15 14 13 19 19 O 1.20705 * 122.47364 * 121.39574 * 18 15 14 20 20 N 1.35258 * 107.56321 * 0.02562 * 4 3 2 21 21 C 1.46508 * 126.04578 * 179.97438 * 20 4 3 22 22 C 1.50700 * 109.46998 * 89.99691 * 21 20 4 23 23 H 1.07999 * 120.00212 * 0.02562 * 22 21 20 24 24 C 1.37876 * 120.00224 * 180.02562 * 22 21 20 25 25 N 1.31523 * 119.99607 * 359.97438 * 24 22 21 26 26 Si 1.86794 * 120.00324 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.47478 * 89.99673 * 26 24 22 28 28 H 1.48507 * 109.47071 * 209.99643 * 26 24 22 29 29 H 1.48499 * 109.47150 * 329.99255 * 26 24 22 30 30 N 1.30847 * 125.83575 * 180.02562 * 2 1 3 31 31 H 1.09004 * 109.47513 * 90.00015 * 1 2 3 32 32 H 1.09001 * 109.47360 * 209.99581 * 1 2 3 33 33 H 1.09000 * 109.47288 * 329.99059 * 1 2 3 34 34 H 1.08003 * 126.08917 * 0.02562 * 3 2 1 35 35 H 0.96997 * 120.00360 * 180.02562 * 5 4 3 36 36 H 1.09073 * 108.94441 * 60.00577 * 8 6 5 37 37 H 1.09254 * 109.21657 * 300.89653 * 9 8 6 38 38 H 1.08906 * 109.72237 * 60.34808 * 9 8 6 39 39 H 1.09164 * 109.40535 * 179.60080 * 12 10 9 40 40 H 1.09141 * 109.45426 * 299.03176 * 12 10 9 41 41 H 1.09446 * 108.86185 * 179.71015 * 13 12 10 42 42 H 1.08868 * 109.80568 * 298.24377 * 13 12 10 43 43 H 1.09175 * 109.40018 * 60.37553 * 14 13 12 44 44 H 1.09142 * 109.46073 * 179.79810 * 14 13 12 45 45 H 1.08899 * 109.71618 * 299.67059 * 17 8 6 46 46 H 1.09248 * 109.20445 * 59.11539 * 17 8 6 47 47 H 1.08994 * 109.47113 * 209.99642 * 21 20 4 48 48 H 1.09000 * 109.47057 * 330.00223 * 21 20 4 49 49 H 0.96997 * 119.99687 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3252 1.1329 0.0000 4 6 3.6196 0.7121 -0.0006 5 7 4.7512 1.5274 -0.0059 6 6 4.6156 2.8683 -0.0106 7 8 3.5096 3.3661 -0.0098 8 6 5.8394 3.7501 -0.0158 9 6 5.4029 5.2147 -0.0356 10 6 6.6403 6.1209 -0.0709 11 1 6.6518 6.7334 -0.9735 12 6 6.6510 6.9961 1.1890 13 6 6.6833 6.1170 2.4373 14 6 7.9275 5.2317 2.4525 15 6 7.9414 4.3227 1.2170 16 1 8.8416 3.7069 1.1938 17 6 6.6784 3.4519 1.2265 18 6 7.8650 5.2215 -0.0074 19 8 8.7136 5.2208 -0.8657 20 7 3.6091 -0.6405 -0.0015 21 6 4.7870 -1.5117 -0.0029 22 6 5.1918 -1.8114 1.4174 23 1 4.6279 -1.3949 2.2390 24 6 6.2821 -2.6172 1.6682 25 7 6.9685 -3.1249 0.6677 26 14 6.7834 -2.9893 3.4287 27 1 6.0842 -4.2138 3.8944 28 1 8.2516 -3.2038 3.4904 29 1 6.4133 -1.8458 4.3009 30 7 2.2730 -1.0608 -0.0005 31 1 -0.3634 0.0000 -1.0277 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3634 0.8899 0.5140 34 1 1.9901 2.1596 0.0004 35 1 5.6358 1.1294 -0.0062 36 1 6.4268 3.5353 -0.9095 37 1 4.7965 5.3972 -0.9259 38 1 4.8079 5.4328 0.8501 39 1 7.5326 7.6398 1.1760 40 1 5.7552 7.6192 1.2064 41 1 6.6958 6.7601 3.3227 42 1 5.7891 5.4972 2.4752 43 1 8.8200 5.8605 2.4503 44 1 7.9263 4.6183 3.3552 45 1 6.0936 3.6554 2.1223 46 1 6.9666 2.3982 1.2211 47 1 4.5494 -2.4429 -0.5171 48 1 5.6080 -1.0119 -0.5169 49 1 7.7357 -3.6915 0.8441 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000523661027.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:23:18 Heat of formation + Delta-G solvation = -16.551810 kcal Electronic energy + Delta-G solvation = -31238.535247 eV Core-core repulsion = 27166.282205 eV Total energy + Delta-G solvation = -4072.253042 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 9.22 seconds Orbital eigenvalues (eV) -41.61640 -40.72054 -39.16477 -37.41245 -34.83397 -33.85474 -33.71861 -33.13775 -32.07331 -29.32355 -28.79935 -27.79425 -26.39680 -26.05259 -23.81610 -22.83131 -22.18751 -22.11075 -20.89503 -19.75717 -19.17107 -17.79160 -17.14935 -17.04774 -16.77782 -16.39724 -15.71299 -15.36168 -15.12687 -15.01144 -14.68535 -14.27334 -14.21183 -14.09079 -13.67508 -13.53598 -13.36236 -13.04426 -12.87314 -12.80316 -12.73470 -12.52884 -12.21408 -12.06093 -11.80975 -11.60166 -11.58702 -11.41330 -11.36419 -11.10614 -10.99971 -10.92541 -10.81078 -10.59567 -10.41184 -10.36107 -9.87559 -9.84250 -9.49426 -9.37870 -8.74925 -7.94397 -7.46982 -6.36083 -4.44849 1.73842 2.19883 2.75411 3.06910 3.14158 3.21532 3.24866 3.56485 3.67147 3.75480 4.15464 4.20796 4.25686 4.36710 4.53340 4.60077 4.66146 4.71009 4.73682 4.95794 4.97265 5.11190 5.16183 5.21968 5.30865 5.34512 5.40459 5.51024 5.53155 5.62653 5.68169 5.71992 5.80751 5.86420 5.90442 5.98583 6.00859 6.08175 6.14373 6.16862 6.24281 6.39922 6.63797 6.80954 7.01606 7.25834 7.48651 7.55307 7.59474 7.76819 7.87217 8.25318 8.59334 8.68359 9.22867 10.71063 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.008924 B = 0.003872 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3136.802903 B = 7229.337822 C = 9340.897022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.050 3.950 3 C -0.295 4.295 4 C 0.301 3.699 5 N -0.638 5.638 6 C 0.526 3.474 7 O -0.512 6.512 8 C -0.111 4.111 9 C -0.090 4.090 10 C -0.135 4.135 11 H 0.101 0.899 12 C -0.107 4.107 13 C -0.131 4.131 14 C -0.109 4.109 15 C -0.133 4.133 16 H 0.105 0.895 17 C -0.109 4.109 18 C 0.371 3.629 19 O -0.451 6.451 20 N -0.344 5.344 21 C 0.256 3.744 22 C -0.540 4.540 23 H 0.065 0.935 24 C 0.068 3.932 25 N -0.889 5.889 26 Si 0.906 3.094 27 H -0.276 1.276 28 H -0.283 1.283 29 H -0.272 1.272 30 N -0.285 5.285 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.161 0.839 35 H 0.416 0.584 36 H 0.100 0.900 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.065 0.935 40 H 0.078 0.922 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.066 0.934 44 H 0.079 0.921 45 H 0.089 0.911 46 H 0.084 0.916 47 H 0.056 0.944 48 H 0.044 0.956 49 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.042 19.129 1.614 19.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.114 4.114 3 C -0.327 4.327 4 C 0.078 3.922 5 N -0.285 5.285 6 C 0.312 3.688 7 O -0.386 6.386 8 C -0.133 4.133 9 C -0.128 4.128 10 C -0.155 4.155 11 H 0.119 0.881 12 C -0.145 4.145 13 C -0.169 4.169 14 C -0.146 4.146 15 C -0.152 4.152 16 H 0.123 0.877 17 C -0.147 4.147 18 C 0.245 3.755 19 O -0.323 6.323 20 N -0.129 5.129 21 C 0.138 3.862 22 C -0.579 4.579 23 H 0.083 0.917 24 C -0.136 4.136 25 N -0.527 5.527 26 Si 0.732 3.268 27 H -0.202 1.202 28 H -0.208 1.208 29 H -0.197 1.197 30 N -0.111 5.111 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.178 0.822 35 H 0.253 0.747 36 H 0.118 0.882 37 H 0.100 0.900 38 H 0.108 0.892 39 H 0.084 0.916 40 H 0.096 0.904 41 H 0.088 0.912 42 H 0.095 0.905 43 H 0.085 0.915 44 H 0.098 0.902 45 H 0.107 0.893 46 H 0.102 0.898 47 H 0.074 0.926 48 H 0.061 0.939 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.065 18.033 1.102 18.067 hybrid contribution 1.041 0.092 0.919 1.392 sum 1.106 18.124 2.021 18.270 Atomic orbital electron populations 1.20017 0.87605 1.02434 1.02035 1.22025 0.96506 0.91055 1.01862 1.21258 0.89046 1.00417 1.21996 1.17950 0.88036 0.83369 1.02833 1.42833 1.08287 1.05659 1.71730 1.20431 0.91065 0.81264 0.76037 1.90633 1.26625 1.73711 1.47587 1.21433 0.95033 0.95826 1.00986 1.21517 0.95741 0.90297 1.05224 1.22336 0.94773 0.97524 1.00820 0.88058 1.21596 1.03015 0.97319 0.92538 1.21611 0.98894 0.98566 0.97786 1.21608 0.98613 0.97675 0.96746 1.22293 1.00338 0.97244 0.95354 0.87689 1.21768 0.94516 1.00760 0.97622 1.25195 0.84752 0.80528 0.85014 1.90397 1.40192 1.62281 1.39471 1.49356 1.06531 1.02194 1.54851 1.19624 0.77809 0.89766 0.98957 1.21326 1.13260 1.32018 0.91286 0.91704 1.24935 0.95692 0.94874 0.98140 1.69920 1.19151 1.32555 1.31039 0.86365 0.77653 0.79128 0.83618 1.20193 1.20833 1.19682 1.77359 0.86148 1.21828 1.25744 0.91387 0.91510 0.91146 0.82157 0.74718 0.88154 0.90025 0.89179 0.91589 0.90370 0.91192 0.90456 0.91487 0.90238 0.89267 0.89762 0.92559 0.93874 0.92134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.91 10.44 36.00 0.38 -0.54 16 2 C 0.05 1.00 7.21 -82.45 -0.59 0.41 16 3 C -0.30 -5.94 9.58 -39.78 -0.38 -6.32 16 4 C 0.30 6.22 7.66 -153.16 -1.17 5.05 16 5 N -0.64 -10.78 5.29 -11.42 -0.06 -10.84 16 6 C 0.53 7.75 7.11 -10.92 -0.08 7.67 16 7 O -0.51 -8.66 13.07 5.55 0.07 -8.58 16 8 C -0.11 -1.21 2.17 -91.87 -0.20 -1.41 16 9 C -0.09 -0.84 4.01 -26.60 -0.11 -0.95 16 10 C -0.14 -1.13 3.59 -90.66 -0.33 -1.46 16 11 H 0.10 0.81 8.15 -51.88 -0.42 0.39 16 12 C -0.11 -0.70 5.24 -26.67 -0.14 -0.84 16 13 C -0.13 -0.86 5.29 -27.03 -0.14 -1.00 16 14 C -0.11 -0.78 5.24 -26.68 -0.14 -0.92 16 15 C -0.13 -1.20 3.59 -90.67 -0.33 -1.53 16 16 H 0.10 0.97 8.15 -51.88 -0.42 0.55 16 17 C -0.11 -1.07 4.62 -26.60 -0.12 -1.19 16 18 C 0.37 3.88 4.65 -27.67 -0.13 3.76 16 19 O -0.45 -6.30 17.96 6.04 0.11 -6.19 16 20 N -0.34 -7.98 3.60 -61.57 -0.22 -8.20 16 21 C 0.26 6.34 6.01 -5.19 -0.03 6.31 16 22 C -0.54 -14.27 9.39 -34.44 -0.32 -14.59 16 23 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 24 C 0.07 1.76 5.46 -17.82 -0.10 1.67 16 25 N -0.89 -24.04 13.29 55.43 0.74 -23.31 16 26 Si 0.91 20.32 29.54 -169.99 -5.02 15.30 16 27 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 28 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 29 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 30 N -0.29 -6.61 12.56 33.65 0.42 -6.19 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.16 3.11 5.83 -52.48 -0.31 2.80 16 35 H 0.42 6.58 7.29 -40.82 -0.30 6.29 16 36 H 0.10 1.08 7.43 -51.89 -0.39 0.69 16 37 H 0.08 0.79 8.09 -51.79 -0.42 0.38 16 38 H 0.09 0.83 6.23 -51.98 -0.32 0.50 16 39 H 0.07 0.41 8.16 -51.84 -0.42 -0.01 16 40 H 0.08 0.43 8.15 -51.85 -0.42 0.01 16 41 H 0.07 0.38 8.18 -51.68 -0.42 -0.04 16 42 H 0.08 0.55 4.99 -52.00 -0.26 0.29 16 43 H 0.07 0.45 8.16 -51.83 -0.42 0.03 16 44 H 0.08 0.53 8.15 -51.85 -0.42 0.11 16 45 H 0.09 0.84 6.28 -51.99 -0.33 0.51 16 46 H 0.08 0.88 7.48 -51.79 -0.39 0.49 16 47 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 48 H 0.04 1.03 7.50 -51.93 -0.39 0.64 16 49 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 384.80 15.07 5.80 5.80 Total: -1.00 -31.94 384.80 -9.39 -41.32 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -7.29 Total: 6.80 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: -3.93 Total: -5.90 kcal Atomic # 7 Polarization: -49.42 SS G_CDS: 0.88 Total: -48.54 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: 0.18 Total: -14.78 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.94 -9.39 -41.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000523661027.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.770 kcal (2) G-P(sol) polarization free energy of solvation -31.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.22 seconds