Wall clock time and date at job start Wed Apr 1 2020 06:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.39749 * 125.83857 * 2 1 4 4 C 1.36115 * 107.82975 * 180.02562 * 3 2 1 5 5 N 1.39473 * 126.21916 * 179.73780 * 4 3 2 6 6 C 1.34779 * 119.99634 * 0.02562 * 5 4 3 7 7 O 1.21288 * 120.00418 * 0.02562 * 6 5 4 8 8 C 1.50839 * 119.99643 * 179.97438 * 6 5 4 9 9 C 1.52839 * 109.17587 * 179.40325 * 8 6 5 10 10 C 1.53412 * 109.63188 * 181.18346 * 9 8 6 11 11 H 1.09088 * 111.05490 * 118.91528 * 10 9 8 12 12 C 1.53409 * 108.89106 * 241.49374 * 10 9 8 13 13 C 1.52705 * 110.06202 * 59.36569 * 12 10 9 14 14 C 1.52704 * 111.04522 * 59.87385 * 13 12 10 15 15 C 1.53391 * 110.05311 * 300.13593 * 14 13 12 16 16 H 1.09095 * 111.04948 * 178.05039 * 15 14 13 17 17 C 1.52844 * 109.17961 * 300.60210 * 8 6 5 18 18 C 1.52077 * 107.32499 * 56.59918 * 15 14 13 19 19 O 1.20705 * 122.47364 * 121.39574 * 18 15 14 20 20 N 1.35258 * 107.56321 * 0.02562 * 4 3 2 21 21 C 1.46508 * 126.04578 * 179.97438 * 20 4 3 22 22 C 1.50700 * 109.46998 * 89.99691 * 21 20 4 23 23 H 1.07999 * 120.00212 * 0.02562 * 22 21 20 24 24 C 1.37876 * 120.00224 * 180.02562 * 22 21 20 25 25 N 1.31523 * 119.99607 * 359.97438 * 24 22 21 26 26 Si 1.86794 * 120.00324 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.47478 * 89.99673 * 26 24 22 28 28 H 1.48507 * 109.47071 * 209.99643 * 26 24 22 29 29 H 1.48499 * 109.47150 * 329.99255 * 26 24 22 30 30 N 1.30847 * 125.83575 * 180.02562 * 2 1 3 31 31 H 1.09004 * 109.47513 * 90.00015 * 1 2 3 32 32 H 1.09001 * 109.47360 * 209.99581 * 1 2 3 33 33 H 1.09000 * 109.47288 * 329.99059 * 1 2 3 34 34 H 1.08003 * 126.08917 * 0.02562 * 3 2 1 35 35 H 0.96997 * 120.00360 * 180.02562 * 5 4 3 36 36 H 1.09073 * 108.94441 * 60.00577 * 8 6 5 37 37 H 1.09254 * 109.21657 * 300.89653 * 9 8 6 38 38 H 1.08906 * 109.72237 * 60.34808 * 9 8 6 39 39 H 1.09164 * 109.40535 * 179.60080 * 12 10 9 40 40 H 1.09141 * 109.45426 * 299.03176 * 12 10 9 41 41 H 1.09446 * 108.86185 * 179.71015 * 13 12 10 42 42 H 1.08868 * 109.80568 * 298.24377 * 13 12 10 43 43 H 1.09175 * 109.40018 * 60.37553 * 14 13 12 44 44 H 1.09142 * 109.46073 * 179.79810 * 14 13 12 45 45 H 1.08899 * 109.71618 * 299.67059 * 17 8 6 46 46 H 1.09248 * 109.20445 * 59.11539 * 17 8 6 47 47 H 1.08994 * 109.47113 * 209.99642 * 21 20 4 48 48 H 1.09000 * 109.47057 * 330.00223 * 21 20 4 49 49 H 0.96997 * 119.99687 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3252 1.1329 0.0000 4 6 3.6196 0.7121 -0.0006 5 7 4.7512 1.5274 -0.0059 6 6 4.6156 2.8683 -0.0106 7 8 3.5096 3.3661 -0.0098 8 6 5.8394 3.7501 -0.0158 9 6 5.4029 5.2147 -0.0356 10 6 6.6403 6.1209 -0.0709 11 1 6.6518 6.7334 -0.9735 12 6 6.6510 6.9961 1.1890 13 6 6.6833 6.1170 2.4373 14 6 7.9275 5.2317 2.4525 15 6 7.9414 4.3227 1.2170 16 1 8.8416 3.7069 1.1938 17 6 6.6784 3.4519 1.2265 18 6 7.8650 5.2215 -0.0074 19 8 8.7136 5.2208 -0.8657 20 7 3.6091 -0.6405 -0.0015 21 6 4.7870 -1.5117 -0.0029 22 6 5.1918 -1.8114 1.4174 23 1 4.6279 -1.3949 2.2390 24 6 6.2821 -2.6172 1.6682 25 7 6.9685 -3.1249 0.6677 26 14 6.7834 -2.9893 3.4287 27 1 6.0842 -4.2138 3.8944 28 1 8.2516 -3.2038 3.4904 29 1 6.4133 -1.8458 4.3009 30 7 2.2730 -1.0608 -0.0005 31 1 -0.3634 0.0000 -1.0277 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3634 0.8899 0.5140 34 1 1.9901 2.1596 0.0004 35 1 5.6358 1.1294 -0.0062 36 1 6.4268 3.5353 -0.9095 37 1 4.7965 5.3972 -0.9259 38 1 4.8079 5.4328 0.8501 39 1 7.5326 7.6398 1.1760 40 1 5.7552 7.6192 1.2064 41 1 6.6958 6.7601 3.3227 42 1 5.7891 5.4972 2.4752 43 1 8.8200 5.8605 2.4503 44 1 7.9263 4.6183 3.3552 45 1 6.0936 3.6554 2.1223 46 1 6.9666 2.3982 1.2211 47 1 4.5494 -2.4429 -0.5171 48 1 5.6080 -1.0119 -0.5169 49 1 7.7357 -3.6915 0.8441 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000523661027.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:23:16 Heat of formation + Delta-G solvation = -34.366393 kcal Electronic energy + Delta-G solvation = -31239.307746 eV Core-core repulsion = 27166.282205 eV Total energy + Delta-G solvation = -4073.025540 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.67729 -42.05986 -40.44469 -38.30084 -36.31409 -35.63245 -34.56564 -33.92586 -33.74413 -30.83682 -30.10409 -28.92804 -27.81686 -27.06842 -25.05015 -24.51174 -22.99235 -22.82300 -22.05052 -21.25730 -20.51726 -18.90233 -18.64661 -18.42440 -17.89388 -17.71646 -16.86248 -16.63411 -16.27333 -16.19725 -15.87396 -15.65318 -15.53691 -14.92347 -14.84718 -14.51129 -14.41851 -14.37275 -14.05612 -14.00198 -13.80972 -13.58276 -13.49500 -13.39381 -13.13056 -13.00101 -12.88088 -12.72763 -12.29917 -12.27346 -12.08456 -12.03505 -11.92765 -11.75797 -11.69128 -11.56345 -11.32520 -11.24251 -10.80706 -10.77407 -10.17410 -9.64242 -9.07580 -8.37036 -6.54822 0.75531 0.91217 1.31339 1.36093 1.39060 1.49144 1.61017 2.04526 2.16270 2.34413 2.90857 2.93672 3.20432 3.38859 3.63340 3.83126 3.83544 3.89181 3.95382 3.99792 4.04520 4.14813 4.25056 4.38519 4.43107 4.50235 4.60754 4.69301 4.71808 4.75162 4.81962 4.84701 4.89296 4.90182 4.92097 4.96642 5.03868 5.11774 5.17021 5.18492 5.21252 5.24111 5.26032 5.36436 5.50222 5.51195 5.75670 5.96262 6.13424 6.25336 6.43722 6.56048 6.91056 7.02439 7.17517 8.69506 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.008924 B = 0.003872 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3136.802903 B = 7229.337822 C = 9340.897022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.058 3.942 3 C -0.305 4.305 4 C 0.298 3.702 5 N -0.640 5.640 6 C 0.529 3.471 7 O -0.529 6.529 8 C -0.102 4.102 9 C -0.085 4.085 10 C -0.129 4.129 11 H 0.106 0.894 12 C -0.104 4.104 13 C -0.131 4.131 14 C -0.107 4.107 15 C -0.131 4.131 16 H 0.100 0.900 17 C -0.106 4.106 18 C 0.371 3.629 19 O -0.491 6.491 20 N -0.367 5.367 21 C 0.272 3.728 22 C -0.554 4.554 23 H 0.049 0.951 24 C 0.028 3.972 25 N -0.915 5.915 26 Si 0.969 3.031 27 H -0.277 1.277 28 H -0.270 1.270 29 H -0.267 1.267 30 N -0.333 5.333 31 H 0.089 0.911 32 H 0.071 0.929 33 H 0.095 0.905 34 H 0.171 0.829 35 H 0.419 0.581 36 H 0.101 0.899 37 H 0.078 0.922 38 H 0.097 0.903 39 H 0.072 0.928 40 H 0.094 0.906 41 H 0.087 0.913 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.087 0.913 45 H 0.097 0.903 46 H 0.075 0.925 47 H 0.025 0.975 48 H 0.045 0.955 49 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.245 21.126 3.176 21.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.107 4.107 3 C -0.337 4.337 4 C 0.076 3.924 5 N -0.287 5.287 6 C 0.317 3.683 7 O -0.403 6.403 8 C -0.123 4.123 9 C -0.123 4.123 10 C -0.148 4.148 11 H 0.124 0.876 12 C -0.142 4.142 13 C -0.169 4.169 14 C -0.144 4.144 15 C -0.150 4.150 16 H 0.118 0.882 17 C -0.144 4.144 18 C 0.248 3.752 19 O -0.366 6.366 20 N -0.153 5.153 21 C 0.153 3.847 22 C -0.592 4.592 23 H 0.068 0.932 24 C -0.174 4.174 25 N -0.553 5.553 26 Si 0.793 3.207 27 H -0.203 1.203 28 H -0.195 1.195 29 H -0.191 1.191 30 N -0.158 5.158 31 H 0.107 0.893 32 H 0.090 0.910 33 H 0.113 0.887 34 H 0.188 0.812 35 H 0.256 0.744 36 H 0.119 0.881 37 H 0.097 0.903 38 H 0.116 0.884 39 H 0.091 0.909 40 H 0.113 0.887 41 H 0.106 0.894 42 H 0.091 0.909 43 H 0.092 0.908 44 H 0.105 0.895 45 H 0.116 0.884 46 H 0.094 0.906 47 H 0.043 0.957 48 H 0.063 0.937 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.226 20.057 2.666 20.235 hybrid contribution 1.067 -0.483 0.381 1.232 sum 0.841 19.574 3.047 19.828 Atomic orbital electron populations 1.20226 0.83906 1.03934 1.03842 1.22894 0.98735 0.90084 0.98959 1.21485 0.88875 1.00873 1.22452 1.18365 0.89608 0.82818 1.01635 1.43061 1.07493 1.06156 1.72002 1.21140 0.92041 0.80516 0.74582 1.90607 1.27790 1.73753 1.48196 1.21473 0.93230 0.95970 1.01639 1.21516 0.96210 0.89041 1.05487 1.22333 0.92862 0.97217 1.02358 0.87551 1.21633 1.04188 0.97105 0.91245 1.21628 0.98117 0.98609 0.98499 1.21643 0.99432 0.97600 0.95760 1.22291 0.99559 0.97255 0.95924 0.88162 1.21763 0.94800 1.00498 0.97312 1.25648 0.84693 0.80349 0.84503 1.90389 1.41836 1.63606 1.40819 1.49158 1.06283 1.02926 1.56914 1.19209 0.78599 0.88919 0.97947 1.21387 1.13616 1.32674 0.91489 0.93238 1.25692 0.95366 0.94289 1.02042 1.70001 1.19502 1.32818 1.32967 0.85391 0.77788 0.78741 0.78809 1.20320 1.19491 1.19130 1.77312 0.86429 1.23728 1.28309 0.89295 0.90960 0.88658 0.81181 0.74374 0.88078 0.90293 0.88449 0.90907 0.88743 0.89445 0.90930 0.90835 0.89457 0.88410 0.90644 0.95678 0.93721 0.91681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.66 10.44 71.23 0.74 -0.92 16 2 C 0.06 2.31 7.21 43.07 0.31 2.62 16 3 C -0.31 -12.17 9.58 22.14 0.21 -11.96 16 4 C 0.30 12.52 7.66 131.32 1.01 13.53 16 5 N -0.64 -21.85 5.29 -308.42 -1.63 -23.48 16 6 C 0.53 15.32 7.11 87.70 0.62 15.95 16 7 O -0.53 -17.37 13.07 -3.05 -0.04 -17.41 16 8 C -0.10 -2.13 2.17 -11.60 -0.03 -2.16 16 9 C -0.08 -1.44 4.01 30.68 0.12 -1.32 16 10 C -0.13 -1.91 3.59 -10.82 -0.04 -1.95 16 11 H 0.11 1.51 8.15 -2.34 -0.02 1.49 16 12 C -0.10 -1.06 5.24 30.63 0.16 -0.90 16 13 C -0.13 -1.33 5.29 30.40 0.16 -1.17 16 14 C -0.11 -1.29 5.24 30.63 0.16 -1.13 16 15 C -0.13 -2.22 3.59 -10.83 -0.04 -2.26 16 16 H 0.10 1.80 8.15 -2.34 -0.02 1.78 16 17 C -0.11 -1.99 4.62 30.68 0.14 -1.84 16 18 C 0.37 7.41 4.65 29.99 0.14 7.55 16 19 O -0.49 -13.66 17.96 -1.29 -0.02 -13.69 16 20 N -0.37 -17.59 3.60 -348.70 -1.26 -18.84 16 21 C 0.27 14.04 6.01 85.63 0.51 14.55 16 22 C -0.55 -29.94 9.39 25.60 0.24 -29.70 16 23 H 0.05 2.78 7.81 -2.91 -0.02 2.76 16 24 C 0.03 1.46 5.46 84.65 0.46 1.92 16 25 N -0.92 -50.03 13.29 21.45 0.28 -49.74 16 26 Si 0.97 41.49 29.54 68.60 2.03 43.52 16 27 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 28 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 29 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 30 N -0.33 -15.74 12.56 -47.46 -0.60 -16.34 16 31 H 0.09 2.10 8.14 -2.38 -0.02 2.08 16 32 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.17 6.41 5.83 -2.91 -0.02 6.40 16 35 H 0.42 13.63 7.29 -92.71 -0.68 12.95 16 36 H 0.10 2.15 7.43 -2.35 -0.02 2.13 16 37 H 0.08 1.42 8.09 -2.25 -0.02 1.40 16 38 H 0.10 1.55 6.23 -2.44 -0.02 1.54 16 39 H 0.07 0.69 8.16 -2.30 -0.02 0.67 16 40 H 0.09 0.71 8.15 -2.31 -0.02 0.69 16 41 H 0.09 0.64 8.18 -2.15 -0.02 0.62 16 42 H 0.07 0.83 4.99 -2.46 -0.01 0.82 16 43 H 0.07 0.82 8.16 -2.29 -0.02 0.80 16 44 H 0.09 0.95 8.15 -2.31 -0.02 0.93 16 45 H 0.10 1.68 6.28 -2.44 -0.02 1.67 16 46 H 0.07 1.56 7.48 -2.26 -0.02 1.54 16 47 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 48 H 0.05 2.24 7.50 -2.39 -0.02 2.22 16 49 H 0.27 14.03 8.31 -92.71 -0.77 13.26 16 Total: -1.00 -69.86 384.80 3.97 -65.89 By element: Atomic # 1 Polarization: 28.98 SS G_CDS: 0.31 Total: 29.29 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: 4.90 Total: 0.81 kcal Atomic # 7 Polarization: -105.21 SS G_CDS: -3.20 Total: -108.41 kcal Atomic # 8 Polarization: -31.04 SS G_CDS: -0.06 Total: -31.10 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.52 kcal Total: -69.86 3.97 -65.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000523661027.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.526 kcal (2) G-P(sol) polarization free energy of solvation -69.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds