Wall clock time and date at job start Wed Apr 1 2020 06:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35319 * 126.12440 * 2 1 4 4 C 1.50689 * 126.04126 * 0.02562 * 3 2 1 5 5 N 1.46901 * 109.47427 * 80.00177 * 4 3 2 6 6 C 1.46904 * 111.00299 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.47017 * 179.97438 * 6 5 4 8 8 H 1.08998 * 109.47020 * 60.00213 * 7 6 5 9 9 O 1.42900 * 109.47151 * 299.99920 * 7 6 5 10 10 C 1.53002 * 109.47025 * 180.02562 * 7 6 5 11 11 O 1.42895 * 109.46981 * 185.00144 * 10 7 6 12 12 C 1.35678 * 116.99997 * 180.02562 * 11 10 7 13 13 C 1.39305 * 119.81904 * 180.02562 * 12 11 10 14 14 C 1.36438 * 120.18360 * 179.71525 * 13 12 11 15 15 C 1.40829 * 119.81200 * 0.27972 * 14 13 12 16 16 C 1.41223 * 120.18048 * 180.02562 * 15 14 13 17 17 H 1.08009 * 119.99992 * 335.14278 * 16 15 14 18 18 C 1.39886 * 120.00282 * 155.13982 * 16 15 14 19 19 N 1.30885 * 119.99755 * 342.15824 * 18 16 15 20 20 Si 1.86800 * 120.00131 * 162.15578 * 18 16 15 21 21 H 1.48502 * 109.47092 * 94.65822 * 20 18 16 22 22 H 1.48501 * 109.47092 * 214.65617 * 20 18 16 23 23 H 1.48497 * 109.47284 * 334.65885 * 20 18 16 24 24 C 1.40828 * 119.64615 * 359.97438 * 15 14 13 25 25 C 1.36442 * 119.80860 * 359.97438 * 24 15 14 26 26 C 1.39879 * 107.91692 * 180.28276 * 3 2 1 27 27 N 1.30837 * 108.20012 * 359.55617 * 26 3 2 28 28 N 1.34949 * 126.12839 * 180.02562 * 2 1 3 29 29 C 1.46498 * 126.03669 * 359.95862 * 28 2 1 30 30 H 1.08995 * 109.46723 * 89.99938 * 1 2 3 31 31 H 1.08996 * 109.46825 * 209.99813 * 1 2 3 32 32 H 1.08993 * 109.46841 * 330.00067 * 1 2 3 33 33 H 1.08996 * 109.47376 * 319.99857 * 4 3 2 34 34 H 1.09003 * 109.47086 * 199.99912 * 4 3 2 35 35 H 1.00900 * 110.99885 * 56.04177 * 5 4 3 36 36 H 1.09007 * 109.46523 * 59.99766 * 6 5 4 37 37 H 1.08998 * 109.47110 * 299.99887 * 6 5 4 38 38 H 0.96699 * 114.00658 * 300.00074 * 9 7 6 39 39 H 1.08999 * 109.46877 * 65.00196 * 10 7 6 40 40 H 1.08996 * 109.46840 * 305.00499 * 10 7 6 41 41 H 1.07998 * 119.90702 * 359.97438 * 13 12 11 42 42 H 1.08003 * 120.09720 * 180.29575 * 14 13 12 43 43 H 0.96996 * 120.00147 * 179.97438 * 19 18 16 44 44 H 1.07994 * 120.10143 * 180.02562 * 24 15 14 45 45 H 1.07998 * 119.91122 * 180.02562 * 25 24 15 46 46 H 1.07994 * 125.89504 * 179.73742 * 26 3 2 47 47 H 1.09007 * 109.47042 * 90.00191 * 29 28 2 48 48 H 1.08997 * 109.47120 * 209.99685 * 29 28 2 49 49 H 1.08999 * 109.47182 * 330.00343 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0930 0.0000 4 6 1.8433 2.5275 0.0005 5 7 1.4649 2.9197 1.3647 6 6 1.0092 4.3157 1.4040 7 6 0.6242 4.6864 2.8376 8 1 1.4906 4.5686 3.4884 9 8 -0.4279 3.8292 3.2850 10 6 0.1491 6.1402 2.8783 11 8 -0.0996 6.5222 4.2326 12 6 -0.5312 7.7908 4.4455 13 6 -0.7912 8.2255 5.7431 14 6 -1.2198 9.5015 5.9662 15 6 -1.4049 10.3779 4.8796 16 6 -1.8479 11.7004 5.1016 17 1 -2.4162 11.9378 5.9889 18 6 -1.5505 12.7029 4.1724 19 7 -0.5936 12.5218 3.2980 20 14 -2.5192 14.3001 4.1796 21 1 -1.7944 15.3150 4.9857 22 1 -2.6731 14.7920 2.7869 23 1 -3.8602 14.0631 4.7719 24 6 -1.1449 9.9289 3.5704 25 6 -0.7158 8.6502 3.3645 26 6 3.6335 0.6560 -0.0066 27 7 3.6334 -0.6524 -0.0007 28 7 2.3027 -1.0900 -0.0005 29 6 1.8540 -2.4846 -0.0003 30 1 -0.3632 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8899 0.5138 33 1 0.9824 2.6325 -0.6597 34 1 2.6512 3.1692 -0.3511 35 1 2.2273 2.7703 2.0085 36 1 0.1426 4.4334 0.7533 37 1 1.8116 4.9696 1.0623 38 1 -1.2323 3.8819 2.7509 39 1 -0.7687 6.2388 2.2986 40 1 0.9180 6.7858 2.4540 41 1 -0.6490 7.5520 6.5753 42 1 -1.4164 9.8385 6.9733 43 1 -0.3877 13.2168 2.6535 44 1 -1.2840 10.5950 2.7317 45 1 -0.5155 8.3043 2.3613 46 1 4.5083 1.2892 -0.0122 47 1 1.7422 -2.8304 -1.0279 48 1 2.5902 -3.1030 0.5131 49 1 0.8958 -2.5579 0.5141 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000564849590.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:24:25 Heat of formation + Delta-G solvation = -15.565639 kcal Electronic energy + Delta-G solvation = -28462.240200 eV Core-core repulsion = 24390.029921 eV Total energy + Delta-G solvation = -4072.210278 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 11.19 seconds Orbital eigenvalues (eV) -42.21876 -40.61953 -39.01579 -37.78006 -36.35190 -35.18462 -34.31749 -33.13725 -31.69961 -31.45587 -30.67970 -28.85258 -27.53357 -26.89126 -26.00039 -24.27250 -23.24000 -22.53236 -22.01436 -21.71812 -20.29296 -19.25827 -18.64398 -17.82794 -17.43114 -17.34767 -16.85662 -16.60584 -16.35610 -15.93499 -15.73548 -15.45978 -15.34100 -15.16996 -14.81237 -14.49775 -14.22056 -14.13362 -13.98885 -13.82802 -13.75122 -13.51864 -13.30243 -13.21899 -13.14366 -12.95246 -12.78894 -12.74130 -12.69375 -12.53365 -12.28897 -11.84586 -11.68164 -11.56836 -11.46673 -11.20341 -10.88600 -10.84575 -10.18088 -9.55601 -9.39780 -9.15721 -8.89227 -8.59211 -6.21377 0.93631 0.95028 1.05598 1.40647 1.50317 1.56560 1.66911 1.77071 2.23902 2.47779 2.73494 3.42485 3.62503 3.66029 3.71870 3.85362 3.96217 4.09211 4.10986 4.21866 4.31371 4.31785 4.37413 4.40762 4.44844 4.50445 4.51085 4.55426 4.66333 4.74477 4.78852 4.84585 4.90604 5.01711 5.03344 5.11370 5.16417 5.17252 5.33658 5.38154 5.53791 5.67470 5.70944 5.98458 6.07148 6.10084 6.18017 6.25343 6.43525 6.57638 6.76363 6.80919 6.95331 6.96421 7.12093 8.37813 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.028394 B = 0.001511 C = 0.001481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.897948 B =18526.280118 C =18901.206357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.105 3.895 3 C -0.258 4.258 4 C 0.147 3.853 5 N -0.678 5.678 6 C 0.041 3.959 7 C 0.127 3.873 8 H 0.092 0.908 9 O -0.558 6.558 10 C 0.030 3.970 11 O -0.329 6.329 12 C 0.000 4.000 13 C -0.124 4.124 14 C -0.205 4.205 15 C 0.053 3.947 16 C -0.500 4.500 17 H 0.075 0.925 18 C 0.035 3.965 19 N -0.832 5.832 20 Si 0.981 3.019 21 H -0.264 1.264 22 H -0.266 1.266 23 H -0.260 1.260 24 C -0.153 4.153 25 C -0.175 4.175 26 C 0.046 3.954 27 N -0.342 5.342 28 N -0.383 5.383 29 C 0.091 3.909 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.042 0.958 35 H 0.340 0.660 36 H 0.091 0.909 37 H 0.049 0.951 38 H 0.383 0.617 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.116 0.884 42 H 0.108 0.892 43 H 0.287 0.713 44 H 0.107 0.893 45 H 0.120 0.880 46 H 0.195 0.805 47 H 0.086 0.914 48 H 0.088 0.912 49 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.622 -23.241 -12.060 26.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.025 4.025 3 C -0.270 4.270 4 C 0.017 3.983 5 N -0.309 5.309 6 C -0.089 4.089 7 C 0.067 3.933 8 H 0.110 0.890 9 O -0.364 6.364 10 C -0.046 4.046 11 O -0.245 6.245 12 C -0.044 4.044 13 C -0.142 4.142 14 C -0.225 4.225 15 C 0.051 3.949 16 C -0.530 4.530 17 H 0.093 0.907 18 C -0.179 4.179 19 N -0.459 5.459 20 Si 0.801 3.199 21 H -0.189 1.189 22 H -0.191 1.191 23 H -0.183 1.183 24 C -0.173 4.173 25 C -0.194 4.194 26 C -0.139 4.139 27 N -0.163 5.163 28 N -0.166 5.166 29 C -0.049 4.049 30 H 0.109 0.891 31 H 0.100 0.900 32 H 0.111 0.889 33 H 0.100 0.900 34 H 0.060 0.940 35 H 0.158 0.842 36 H 0.109 0.891 37 H 0.068 0.932 38 H 0.232 0.768 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.134 0.866 42 H 0.126 0.874 43 H 0.097 0.903 44 H 0.125 0.875 45 H 0.138 0.862 46 H 0.212 0.788 47 H 0.105 0.895 48 H 0.107 0.893 49 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 3.275 -24.928 -11.716 27.738 hybrid contribution 0.073 2.312 -0.624 2.396 sum 3.348 -22.616 -12.340 25.980 Atomic orbital electron populations 1.20557 0.85181 1.05007 1.04022 1.21390 0.95879 0.86663 0.98527 1.19860 0.92037 0.95919 1.19160 1.20051 0.99140 0.89349 0.89727 1.60397 1.42444 1.20192 1.07856 1.22428 1.01480 0.89608 0.95366 1.21739 0.90862 0.85023 0.95716 0.89024 1.86593 1.26224 1.64792 1.58755 1.23498 1.00949 0.97436 0.82750 1.85865 1.83082 1.26979 1.28574 1.18720 1.07172 0.84457 0.94023 1.19893 1.03993 0.96160 0.94199 1.20796 1.09226 0.94557 0.97920 1.17963 0.91432 0.93767 0.91751 1.19713 1.32519 0.93451 1.07333 0.90711 1.26700 0.94068 1.03763 0.93347 1.69887 1.23906 1.36025 1.16059 0.85220 0.79323 0.76551 0.78768 1.18911 1.19053 1.18336 1.20906 1.04658 0.94485 0.97235 1.20818 1.06194 0.95045 0.97337 1.24125 0.98665 0.92064 0.99086 1.77287 0.98285 1.13806 1.26941 1.48750 1.03456 1.07384 1.56996 1.22136 1.02064 0.76236 1.04489 0.89060 0.89955 0.88925 0.89991 0.94025 0.84225 0.89072 0.93241 0.76811 0.91679 0.91966 0.86563 0.87369 0.90257 0.87502 0.86172 0.78847 0.89511 0.89316 0.87286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.90 9.89 71.24 0.70 -0.19 16 2 C 0.10 1.70 6.93 41.41 0.29 1.99 16 3 C -0.26 -4.49 5.61 -20.14 -0.11 -4.60 16 4 C 0.15 2.12 5.68 85.55 0.49 2.60 16 5 N -0.68 -11.01 6.36 -517.94 -3.29 -14.30 16 6 C 0.04 0.66 5.35 86.30 0.46 1.12 16 7 C 0.13 2.87 3.46 30.59 0.11 2.97 16 8 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 9 O -0.56 -13.84 13.17 -144.31 -1.90 -15.74 16 10 C 0.03 0.86 4.36 71.98 0.31 1.17 16 11 O -0.33 -12.94 10.09 -85.29 -0.86 -13.80 16 12 C 0.00 0.01 6.71 22.79 0.15 0.16 16 13 C -0.12 -5.79 9.92 22.11 0.22 -5.57 16 14 C -0.21 -10.34 9.74 22.48 0.22 -10.12 16 15 C 0.05 2.90 5.57 -21.28 -0.12 2.78 16 16 C -0.50 -27.19 9.04 23.40 0.21 -26.98 16 17 H 0.07 3.92 7.91 -2.91 -0.02 3.90 16 18 C 0.03 1.77 5.13 85.23 0.44 2.20 16 19 N -0.83 -43.47 10.97 21.82 0.24 -43.23 16 20 Si 0.98 38.19 29.60 68.60 2.03 40.22 16 21 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 22 H -0.27 -9.82 7.11 99.48 0.71 -9.11 16 23 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 24 C -0.15 -8.05 8.64 22.48 0.19 -7.86 16 25 C -0.18 -8.06 8.97 22.11 0.20 -7.87 16 26 C 0.05 0.88 11.96 85.24 1.02 1.90 16 27 N -0.34 -7.61 12.58 -57.02 -0.72 -8.33 16 28 N -0.38 -6.72 4.01 -356.03 -1.43 -8.15 16 29 C 0.09 0.81 11.27 127.77 1.44 2.25 16 30 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.08 0.58 7.08 -2.39 -0.02 0.56 16 32 H 0.09 1.09 7.88 -2.39 -0.02 1.07 16 33 H 0.08 1.07 8.13 -2.39 -0.02 1.05 16 34 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.34 6.02 8.72 -89.69 -0.78 5.24 16 36 H 0.09 1.26 8.14 -2.38 -0.02 1.25 16 37 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.38 6.98 9.05 -74.06 -0.67 6.31 16 39 H 0.07 1.72 7.63 -2.39 -0.02 1.70 16 40 H 0.06 1.73 7.66 -2.39 -0.02 1.71 16 41 H 0.12 4.88 8.06 -2.91 -0.02 4.86 16 42 H 0.11 5.08 8.06 -2.91 -0.02 5.05 16 43 H 0.29 13.51 8.30 -92.71 -0.77 12.74 16 44 H 0.11 5.81 6.18 -2.91 -0.02 5.79 16 45 H 0.12 4.73 6.27 -2.91 -0.02 4.71 16 46 H 0.19 2.71 8.06 -2.91 -0.02 2.69 16 47 H 0.09 0.53 8.14 -2.38 -0.02 0.51 16 48 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 49 H 0.11 0.45 7.05 -2.39 -0.02 0.43 16 Total: -1.00 -70.31 409.36 -0.18 -70.49 By element: Atomic # 1 Polarization: 37.36 SS G_CDS: -0.47 Total: 36.88 kcal Atomic # 6 Polarization: -50.27 SS G_CDS: 6.22 Total: -44.05 kcal Atomic # 7 Polarization: -68.81 SS G_CDS: -5.20 Total: -74.01 kcal Atomic # 8 Polarization: -26.78 SS G_CDS: -2.76 Total: -29.54 kcal Atomic # 14 Polarization: 38.19 SS G_CDS: 2.03 Total: 40.22 kcal Total: -70.31 -0.18 -70.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564849590.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.925 kcal (2) G-P(sol) polarization free energy of solvation -70.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 11.20 seconds