Wall clock time and date at job start Wed Apr 1 2020 06:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.39871 * 125.90330 * 2 1 4 4 C 1.35309 * 107.92362 * 180.14000 * 3 2 1 5 5 C 1.50704 * 126.12756 * 179.90161 * 4 3 2 6 6 N 1.46904 * 109.46607 * 94.69649 * 5 4 3 7 7 C 1.46901 * 110.99769 * 180.02562 * 6 5 4 8 8 C 1.52992 * 109.47133 * 179.97438 * 7 6 5 9 9 H 1.08995 * 109.47251 * 304.99862 * 8 7 6 10 10 O 1.42903 * 109.47230 * 65.00292 * 8 7 6 11 11 C 1.53005 * 109.47366 * 184.99634 * 8 7 6 12 12 O 1.42897 * 109.47198 * 175.00193 * 11 8 7 13 13 C 1.35683 * 116.99685 * 180.02562 * 12 11 8 14 14 C 1.39305 * 119.81261 * 180.02562 * 13 12 11 15 15 C 1.36441 * 120.18225 * 179.72110 * 14 13 12 16 16 C 1.40834 * 119.80994 * 0.26831 * 15 14 13 17 17 C 1.41215 * 120.17646 * 180.02562 * 16 15 14 18 18 H 1.08006 * 120.00196 * 204.54801 * 17 16 15 19 19 C 1.39888 * 120.00093 * 24.55741 * 17 16 15 20 20 N 1.30881 * 120.00110 * 17.92429 * 19 17 16 21 21 Si 1.86803 * 119.99833 * 197.92928 * 19 17 16 22 22 H 1.48503 * 109.47208 * 59.99802 * 21 19 17 23 23 H 1.48511 * 109.47031 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47221 * 299.99522 * 21 19 17 25 25 C 1.40829 * 119.64178 * 0.02562 * 16 15 14 26 26 C 1.36431 * 119.81319 * 359.97438 * 25 16 15 27 27 N 1.34953 * 107.74690 * 359.64363 * 4 3 2 28 28 C 1.46494 * 126.03688 * 180.20373 * 27 4 3 29 29 N 1.30836 * 125.89823 * 179.74104 * 2 1 3 30 30 H 1.08998 * 109.47087 * 270.23587 * 1 2 3 31 31 H 1.09000 * 109.47212 * 30.23458 * 1 2 3 32 32 H 1.09004 * 109.47480 * 150.22938 * 1 2 3 33 33 H 1.08004 * 126.03463 * 0.02562 * 3 2 1 34 34 H 1.08997 * 109.47178 * 334.69789 * 5 4 3 35 35 H 1.08996 * 109.47178 * 214.68960 * 5 4 3 36 36 H 1.00896 * 111.00618 * 56.04527 * 6 5 4 37 37 H 1.08999 * 109.47182 * 59.99628 * 7 6 5 38 38 H 1.09004 * 109.47151 * 299.99941 * 7 6 5 39 39 H 0.96698 * 114.00229 * 59.99657 * 10 8 7 40 40 H 1.09005 * 109.46782 * 55.00173 * 11 8 7 41 41 H 1.09002 * 109.47300 * 295.00717 * 11 8 7 42 42 H 1.08000 * 119.91135 * 359.97438 * 14 13 12 43 43 H 1.07999 * 120.09455 * 180.29138 * 15 14 13 44 44 H 0.97005 * 119.99879 * 180.02562 * 20 19 17 45 45 H 1.07999 * 120.09144 * 180.02562 * 25 16 15 46 46 H 1.08003 * 119.90891 * 180.02562 * 26 25 16 47 47 H 1.09000 * 109.47482 * 90.00342 * 28 27 4 48 48 H 1.09005 * 109.47237 * 210.00013 * 28 27 4 49 49 H 1.09001 * 109.47541 * 329.99835 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3272 1.1330 0.0000 4 6 3.6142 0.7153 -0.0031 5 6 4.8350 1.5988 -0.0064 6 7 5.3016 1.7943 1.3728 7 6 6.4929 2.6531 1.4088 8 6 6.9478 2.8336 2.8584 9 1 6.1188 3.2151 3.4545 10 8 7.3732 1.5749 3.3844 11 6 8.1110 3.8264 2.9081 12 8 8.4595 4.0840 4.2697 13 6 9.4800 4.9503 4.4910 14 6 9.8690 5.2435 5.7961 15 6 10.8979 6.1093 6.0271 16 6 11.5634 6.7114 4.9417 17 6 12.6297 7.6082 5.1719 18 1 12.8777 8.3539 4.4310 19 6 13.3649 7.5305 6.3594 20 7 13.3167 6.4452 7.0893 21 14 14.4155 8.9761 6.9036 22 1 13.5540 10.1708 7.0925 23 1 15.0886 8.6441 8.1852 24 1 15.4388 9.2626 5.8663 25 6 11.1597 6.4142 3.6256 26 6 10.1290 5.5464 3.4119 27 7 3.6087 -0.6342 0.0029 28 6 4.7898 -1.5008 0.0064 29 7 2.2741 -1.0598 0.0048 30 1 -0.3633 0.0042 1.0276 31 1 -0.3633 0.8879 -0.5175 32 1 -0.3634 -0.8920 -0.5103 33 1 1.9923 2.1598 0.0004 34 1 4.5836 2.5644 -0.4452 35 1 5.6233 1.1272 -0.5931 36 1 5.4798 0.9091 1.8232 37 1 6.2525 3.6259 0.9800 38 1 7.2928 2.1892 0.8317 39 1 8.1099 1.1756 2.9018 40 1 7.8142 4.7581 2.4264 41 1 8.9705 3.4054 2.3863 42 1 9.3574 4.7811 6.6273 43 1 11.2014 6.3319 7.0394 44 1 13.8263 6.3915 7.9129 45 1 11.6653 6.8715 2.7879 46 1 9.8184 5.3171 2.4032 47 1 5.0831 -1.7112 1.0349 48 1 4.5561 -2.4357 -0.5032 49 1 5.6091 -1.0006 -0.5100 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000564870059.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:25:42 Heat of formation + Delta-G solvation = 5.674219 kcal Electronic energy + Delta-G solvation = -28323.043115 eV Core-core repulsion = 24251.753866 eV Total energy + Delta-G solvation = -4071.289249 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 5.28 seconds Orbital eigenvalues (eV) -41.57924 -39.17730 -37.97350 -36.35849 -35.64734 -34.13229 -33.33941 -31.69606 -30.36445 -29.80550 -29.40116 -28.93796 -26.59063 -25.69260 -24.82845 -23.85066 -22.07633 -20.83061 -20.66222 -20.59940 -19.62881 -17.43037 -17.37409 -16.88932 -16.64225 -16.45922 -16.14034 -15.60649 -15.20410 -14.96621 -14.67541 -14.23249 -14.12939 -13.94508 -13.86620 -13.72304 -13.57353 -13.20729 -12.96736 -12.86361 -12.68210 -12.43983 -12.38249 -12.28081 -12.16563 -12.00009 -11.81155 -11.41855 -11.14571 -11.04000 -10.86075 -10.80771 -10.62367 -10.13946 -9.99318 -9.85305 -9.44249 -9.35568 -9.03691 -8.94083 -8.74653 -7.66588 -7.05516 -6.74049 -4.27577 1.49647 2.16565 2.47823 2.77266 2.92887 3.06872 3.09093 3.20819 3.48877 3.93608 4.10724 4.13803 4.20839 4.31107 4.54511 4.59958 4.66502 4.75178 4.84278 4.88691 4.96249 4.98423 5.04807 5.12994 5.27019 5.31891 5.34415 5.38852 5.54760 5.56505 5.60608 5.65193 5.91128 5.97601 6.02741 6.20661 6.40468 6.41395 6.69760 6.70988 6.87299 6.95557 7.09001 7.16453 7.43519 7.44791 7.52541 7.55182 7.76623 7.98393 8.18473 8.42831 8.63088 8.87943 8.96616 10.20353 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.036367 B = 0.001429 C = 0.001423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.750517 B =19588.421023 C =19676.719614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.070 3.930 3 C -0.249 4.249 4 C 0.087 3.913 5 C 0.123 3.877 6 N -0.676 5.676 7 C 0.032 3.968 8 C 0.112 3.888 9 H 0.116 0.884 10 O -0.551 6.551 11 C 0.040 3.960 12 O -0.317 6.317 13 C -0.010 4.010 14 C -0.118 4.118 15 C -0.133 4.133 16 C 0.088 3.912 17 C -0.464 4.464 18 H 0.076 0.924 19 C 0.075 3.925 20 N -0.798 5.798 21 Si 0.908 3.092 22 H -0.264 1.264 23 H -0.279 1.279 24 H -0.266 1.266 25 C -0.199 4.199 26 C -0.168 4.168 27 N -0.372 5.372 28 C 0.098 3.902 29 N -0.296 5.296 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.148 0.852 34 H 0.101 0.899 35 H 0.042 0.958 36 H 0.349 0.651 37 H 0.089 0.911 38 H 0.038 0.962 39 H 0.369 0.631 40 H 0.059 0.941 41 H 0.051 0.949 42 H 0.098 0.902 43 H 0.126 0.874 44 H 0.281 0.719 45 H 0.094 0.906 46 H 0.092 0.908 47 H 0.077 0.923 48 H 0.090 0.910 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.500 -11.605 -14.479 24.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.096 4.096 3 C -0.279 4.279 4 C -0.040 4.040 5 C -0.008 4.008 6 N -0.309 5.309 7 C -0.098 4.098 8 C 0.052 3.948 9 H 0.134 0.866 10 O -0.355 6.355 11 C -0.038 4.038 12 O -0.232 6.232 13 C -0.053 4.053 14 C -0.137 4.137 15 C -0.153 4.153 16 C 0.086 3.914 17 C -0.494 4.494 18 H 0.094 0.906 19 C -0.142 4.142 20 N -0.424 5.424 21 Si 0.732 3.268 22 H -0.189 1.189 23 H -0.204 1.204 24 H -0.191 1.191 25 C -0.219 4.219 26 C -0.187 4.187 27 N -0.155 5.155 28 C -0.044 4.044 29 N -0.119 5.119 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.089 0.911 33 H 0.166 0.834 34 H 0.119 0.881 35 H 0.060 0.940 36 H 0.168 0.832 37 H 0.107 0.893 38 H 0.056 0.944 39 H 0.216 0.784 40 H 0.077 0.923 41 H 0.069 0.931 42 H 0.116 0.884 43 H 0.143 0.857 44 H 0.092 0.908 45 H 0.112 0.888 46 H 0.110 0.890 47 H 0.095 0.905 48 H 0.108 0.892 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -17.228 -12.543 -13.567 25.263 hybrid contribution 1.959 0.850 -0.770 2.270 sum -15.269 -11.693 -14.337 23.988 Atomic orbital electron populations 1.20172 0.86643 1.03182 1.03046 1.22332 0.96976 0.90778 0.99535 1.21131 0.90771 0.99861 1.16175 1.20869 0.96978 0.84138 1.02050 1.20498 0.91417 0.98309 0.90551 1.60333 1.34320 1.20792 1.15420 1.22584 0.91063 0.98910 0.97197 1.21967 0.96202 0.83446 0.93185 0.86580 1.86665 1.54634 1.34961 1.59233 1.23065 0.96863 0.98606 0.85225 1.85891 1.50868 1.62151 1.24320 1.18614 0.93915 0.98614 0.94186 1.19846 0.99590 1.01553 0.92737 1.20985 0.94928 0.99396 0.99945 1.17594 0.91839 0.91513 0.90464 1.19433 1.12667 1.14975 1.02352 0.90589 1.25876 0.96463 0.96010 0.95809 1.69826 1.34658 1.25153 1.12788 0.86384 0.79928 0.82072 0.78407 1.18864 1.20365 1.19104 1.20548 1.01208 1.03671 0.96469 1.20381 1.00365 1.02372 0.95562 1.48380 1.05517 1.04170 1.57422 1.21858 0.83866 0.95035 1.03604 1.77310 0.86174 1.22735 1.25721 0.90468 0.90389 0.91072 0.83442 0.88112 0.94009 0.83215 0.89271 0.94417 0.78434 0.92264 0.93063 0.88422 0.85657 0.90831 0.88789 0.88994 0.90475 0.89160 0.89815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.48 10.45 36.00 0.38 -0.11 16 2 C 0.07 0.71 7.22 -82.41 -0.59 0.12 16 3 C -0.25 -2.44 10.65 -40.01 -0.43 -2.87 16 4 C 0.09 0.81 6.44 -82.26 -0.53 0.28 16 5 C 0.12 0.88 5.86 -4.97 -0.03 0.86 16 6 N -0.68 -5.77 6.49 -115.06 -0.75 -6.52 16 7 C 0.03 0.26 5.36 -3.83 -0.02 0.24 16 8 C 0.11 1.30 3.49 -26.73 -0.09 1.20 16 9 H 0.12 1.53 8.14 -51.93 -0.42 1.11 16 10 O -0.55 -6.78 12.82 -40.09 -0.51 -7.29 16 11 C 0.04 0.57 4.36 37.16 0.16 0.74 16 12 O -0.32 -6.37 10.09 -23.61 -0.24 -6.60 16 13 C -0.01 -0.23 6.71 -38.79 -0.26 -0.49 16 14 C -0.12 -2.88 9.92 -39.83 -0.40 -3.27 16 15 C -0.13 -3.47 8.64 -39.25 -0.34 -3.81 16 16 C 0.09 2.34 5.57 -106.81 -0.60 1.75 16 17 C -0.46 -12.25 9.04 -37.83 -0.34 -12.59 16 18 H 0.08 1.92 7.91 -52.48 -0.41 1.50 16 19 C 0.08 1.89 5.13 -17.34 -0.09 1.80 16 20 N -0.80 -20.59 10.96 55.54 0.61 -19.98 16 21 Si 0.91 18.56 29.60 -169.99 -5.03 13.53 16 22 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 23 H -0.28 -5.56 7.11 56.52 0.40 -5.15 16 24 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 25 C -0.20 -4.84 9.74 -39.25 -0.38 -5.22 16 26 C -0.17 -3.72 8.96 -39.83 -0.36 -4.08 16 27 N -0.37 -3.62 4.01 -63.89 -0.26 -3.87 16 28 C 0.10 0.59 11.27 59.84 0.67 1.26 16 29 N -0.30 -3.46 12.58 33.67 0.42 -3.04 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.15 1.20 8.06 -52.48 -0.42 0.78 16 34 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.04 0.24 7.24 -51.93 -0.38 -0.13 16 36 H 0.35 3.11 8.28 -39.29 -0.33 2.79 16 37 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.37 3.23 9.05 45.56 0.41 3.65 16 40 H 0.06 0.81 7.63 -51.93 -0.40 0.41 16 41 H 0.05 0.70 7.66 -51.93 -0.40 0.30 16 42 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 43 H 0.13 3.34 6.16 -52.49 -0.32 3.02 16 44 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 45 H 0.09 2.13 8.06 -52.49 -0.42 1.70 16 46 H 0.09 1.73 6.27 -52.48 -0.33 1.40 16 47 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.08 0.33 7.15 -51.93 -0.37 -0.04 16 LS Contribution 409.79 15.07 6.18 6.18 Total: -1.00 -32.37 409.79 -9.55 -41.92 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: -6.73 Total: 9.88 kcal Atomic # 6 Polarization: -20.95 SS G_CDS: -3.24 Total: -24.19 kcal Atomic # 7 Polarization: -33.44 SS G_CDS: 0.03 Total: -33.41 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: -0.75 Total: -13.90 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.03 Total: 13.53 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -32.37 -9.55 -41.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564870059.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.591 kcal (2) G-P(sol) polarization free energy of solvation -32.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.28 seconds