Wall clock time and date at job start Wed Apr 1 2020 06:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.39871 * 125.90330 * 2 1 4 4 C 1.35309 * 107.92362 * 180.14000 * 3 2 1 5 5 C 1.50704 * 126.12756 * 179.90161 * 4 3 2 6 6 N 1.46904 * 109.46607 * 94.69649 * 5 4 3 7 7 C 1.46901 * 110.99769 * 180.02562 * 6 5 4 8 8 C 1.52992 * 109.47133 * 179.97438 * 7 6 5 9 9 H 1.08995 * 109.47251 * 304.99862 * 8 7 6 10 10 O 1.42903 * 109.47230 * 65.00292 * 8 7 6 11 11 C 1.53005 * 109.47366 * 184.99634 * 8 7 6 12 12 O 1.42897 * 109.47198 * 175.00193 * 11 8 7 13 13 C 1.35683 * 116.99685 * 180.02562 * 12 11 8 14 14 C 1.39305 * 119.81261 * 180.02562 * 13 12 11 15 15 C 1.36441 * 120.18225 * 179.72110 * 14 13 12 16 16 C 1.40834 * 119.80994 * 0.26831 * 15 14 13 17 17 C 1.41215 * 120.17646 * 180.02562 * 16 15 14 18 18 H 1.08006 * 120.00196 * 204.54801 * 17 16 15 19 19 C 1.39888 * 120.00093 * 24.55741 * 17 16 15 20 20 N 1.30881 * 120.00110 * 17.92429 * 19 17 16 21 21 Si 1.86803 * 119.99833 * 197.92928 * 19 17 16 22 22 H 1.48503 * 109.47208 * 59.99802 * 21 19 17 23 23 H 1.48511 * 109.47031 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47221 * 299.99522 * 21 19 17 25 25 C 1.40829 * 119.64178 * 0.02562 * 16 15 14 26 26 C 1.36431 * 119.81319 * 359.97438 * 25 16 15 27 27 N 1.34953 * 107.74690 * 359.64363 * 4 3 2 28 28 C 1.46494 * 126.03688 * 180.20373 * 27 4 3 29 29 N 1.30836 * 125.89823 * 179.74104 * 2 1 3 30 30 H 1.08998 * 109.47087 * 270.23587 * 1 2 3 31 31 H 1.09000 * 109.47212 * 30.23458 * 1 2 3 32 32 H 1.09004 * 109.47480 * 150.22938 * 1 2 3 33 33 H 1.08004 * 126.03463 * 0.02562 * 3 2 1 34 34 H 1.08997 * 109.47178 * 334.69789 * 5 4 3 35 35 H 1.08996 * 109.47178 * 214.68960 * 5 4 3 36 36 H 1.00896 * 111.00618 * 56.04527 * 6 5 4 37 37 H 1.08999 * 109.47182 * 59.99628 * 7 6 5 38 38 H 1.09004 * 109.47151 * 299.99941 * 7 6 5 39 39 H 0.96698 * 114.00229 * 59.99657 * 10 8 7 40 40 H 1.09005 * 109.46782 * 55.00173 * 11 8 7 41 41 H 1.09002 * 109.47300 * 295.00717 * 11 8 7 42 42 H 1.08000 * 119.91135 * 359.97438 * 14 13 12 43 43 H 1.07999 * 120.09455 * 180.29138 * 15 14 13 44 44 H 0.97005 * 119.99879 * 180.02562 * 20 19 17 45 45 H 1.07999 * 120.09144 * 180.02562 * 25 16 15 46 46 H 1.08003 * 119.90891 * 180.02562 * 26 25 16 47 47 H 1.09000 * 109.47482 * 90.00342 * 28 27 4 48 48 H 1.09005 * 109.47237 * 210.00013 * 28 27 4 49 49 H 1.09001 * 109.47541 * 329.99835 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3272 1.1330 0.0000 4 6 3.6142 0.7153 -0.0031 5 6 4.8350 1.5988 -0.0064 6 7 5.3016 1.7943 1.3728 7 6 6.4929 2.6531 1.4088 8 6 6.9478 2.8336 2.8584 9 1 6.1188 3.2151 3.4545 10 8 7.3732 1.5749 3.3844 11 6 8.1110 3.8264 2.9081 12 8 8.4595 4.0840 4.2697 13 6 9.4800 4.9503 4.4910 14 6 9.8690 5.2435 5.7961 15 6 10.8979 6.1093 6.0271 16 6 11.5634 6.7114 4.9417 17 6 12.6297 7.6082 5.1719 18 1 12.8777 8.3539 4.4310 19 6 13.3649 7.5305 6.3594 20 7 13.3167 6.4452 7.0893 21 14 14.4155 8.9761 6.9036 22 1 13.5540 10.1708 7.0925 23 1 15.0886 8.6441 8.1852 24 1 15.4388 9.2626 5.8663 25 6 11.1597 6.4142 3.6256 26 6 10.1290 5.5464 3.4119 27 7 3.6087 -0.6342 0.0029 28 6 4.7898 -1.5008 0.0064 29 7 2.2741 -1.0598 0.0048 30 1 -0.3633 0.0042 1.0276 31 1 -0.3633 0.8879 -0.5175 32 1 -0.3634 -0.8920 -0.5103 33 1 1.9923 2.1598 0.0004 34 1 4.5836 2.5644 -0.4452 35 1 5.6233 1.1272 -0.5931 36 1 5.4798 0.9091 1.8232 37 1 6.2525 3.6259 0.9800 38 1 7.2928 2.1892 0.8317 39 1 8.1099 1.1756 2.9018 40 1 7.8142 4.7581 2.4264 41 1 8.9705 3.4054 2.3863 42 1 9.3574 4.7811 6.6273 43 1 11.2014 6.3319 7.0394 44 1 13.8263 6.3915 7.9129 45 1 11.6653 6.8715 2.7879 46 1 9.8184 5.3171 2.4032 47 1 5.0831 -1.7112 1.0349 48 1 4.5561 -2.4357 -0.5032 49 1 5.6091 -1.0006 -0.5100 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000564870059.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:25:08 Heat of formation + Delta-G solvation = -16.920964 kcal Electronic energy + Delta-G solvation = -28324.022916 eV Core-core repulsion = 24251.753866 eV Total energy + Delta-G solvation = -4072.269050 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 24.24 seconds Orbital eigenvalues (eV) -42.24109 -40.64932 -39.14806 -37.86014 -36.48493 -35.17457 -34.74337 -32.50811 -31.75856 -31.04848 -30.62848 -30.17227 -27.53372 -26.54113 -26.21986 -24.79087 -23.18657 -22.44517 -22.22461 -21.40052 -20.27436 -19.24713 -18.74951 -17.80984 -17.55022 -17.43811 -17.04038 -16.83157 -16.44344 -15.98758 -15.73195 -15.42674 -15.30108 -15.19516 -14.83114 -14.43862 -14.36935 -14.23484 -14.06835 -13.93453 -13.82076 -13.58700 -13.40646 -13.23133 -13.12049 -12.94286 -12.90617 -12.78186 -12.62990 -12.60333 -12.37629 -11.91446 -11.71023 -11.57749 -11.49704 -11.23407 -11.01192 -10.86262 -10.13585 -9.55398 -9.54245 -9.40285 -8.91702 -8.58911 -6.22183 0.81684 0.96273 1.03612 1.40196 1.51021 1.55248 1.59940 1.78095 2.23080 2.42711 2.73576 3.25231 3.47323 3.58264 3.61938 3.71122 3.93286 4.02111 4.03640 4.07988 4.19627 4.30085 4.32075 4.36521 4.38175 4.45422 4.48728 4.54085 4.63716 4.71414 4.77142 4.82843 4.87565 4.95098 5.04623 5.08105 5.09239 5.22718 5.28816 5.29016 5.59709 5.64970 5.76687 5.82155 5.89104 6.06431 6.10910 6.23483 6.27223 6.57361 6.75790 6.78301 6.83763 6.95754 7.11526 8.37361 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.036367 B = 0.001429 C = 0.001423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.750517 B =19588.421023 C =19676.719614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.057 3.943 3 C -0.271 4.271 4 C 0.085 3.915 5 C 0.128 3.872 6 N -0.688 5.688 7 C 0.044 3.956 8 C 0.121 3.879 9 H 0.096 0.904 10 O -0.569 6.569 11 C 0.030 3.970 12 O -0.333 6.333 13 C 0.001 3.999 14 C -0.136 4.136 15 C -0.153 4.153 16 C 0.054 3.946 17 C -0.500 4.500 18 H 0.077 0.923 19 C 0.034 3.966 20 N -0.832 5.832 21 Si 0.981 3.019 22 H -0.261 1.261 23 H -0.270 1.270 24 H -0.259 1.259 25 C -0.207 4.207 26 C -0.164 4.164 27 N -0.378 5.378 28 C 0.090 3.910 29 N -0.337 5.337 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.072 0.928 33 H 0.159 0.841 34 H 0.111 0.889 35 H 0.062 0.938 36 H 0.346 0.654 37 H 0.100 0.900 38 H 0.061 0.939 39 H 0.385 0.615 40 H 0.073 0.927 41 H 0.067 0.933 42 H 0.104 0.896 43 H 0.108 0.892 44 H 0.287 0.713 45 H 0.107 0.893 46 H 0.132 0.868 47 H 0.081 0.919 48 H 0.093 0.907 49 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.448 -11.426 -16.342 25.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.108 4.108 3 C -0.301 4.301 4 C -0.043 4.043 5 C -0.001 4.001 6 N -0.320 5.320 7 C -0.085 4.085 8 C 0.062 3.938 9 H 0.114 0.886 10 O -0.376 6.376 11 C -0.047 4.047 12 O -0.248 6.248 13 C -0.043 4.043 14 C -0.155 4.155 15 C -0.172 4.172 16 C 0.051 3.949 17 C -0.530 4.530 18 H 0.095 0.905 19 C -0.180 4.180 20 N -0.459 5.459 21 Si 0.802 3.198 22 H -0.186 1.186 23 H -0.194 1.194 24 H -0.183 1.183 25 C -0.227 4.227 26 C -0.182 4.182 27 N -0.161 5.161 28 C -0.051 4.051 29 N -0.161 5.161 30 H 0.100 0.900 31 H 0.114 0.886 32 H 0.091 0.909 33 H 0.176 0.824 34 H 0.129 0.871 35 H 0.080 0.920 36 H 0.164 0.836 37 H 0.118 0.882 38 H 0.079 0.921 39 H 0.234 0.766 40 H 0.091 0.909 41 H 0.085 0.915 42 H 0.122 0.878 43 H 0.126 0.874 44 H 0.098 0.902 45 H 0.125 0.875 46 H 0.150 0.850 47 H 0.100 0.900 48 H 0.112 0.888 49 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -17.187 -12.392 -15.458 26.228 hybrid contribution 1.816 0.644 -0.272 1.946 sum -15.371 -11.748 -15.730 24.934 Atomic orbital electron populations 1.20273 0.84868 1.04135 1.03643 1.22871 0.98388 0.90703 0.98867 1.21441 0.91266 1.00404 1.16994 1.21245 0.97683 0.84302 1.01091 1.20540 0.91004 0.98568 0.90035 1.60280 1.34616 1.20770 1.16364 1.22442 0.91636 0.99713 0.94715 1.21842 0.94359 0.82484 0.95151 0.88623 1.86633 1.55562 1.35132 1.60274 1.23496 0.98476 1.00164 0.82522 1.85885 1.49623 1.61109 1.28218 1.18681 0.93871 0.98024 0.93723 1.20008 0.99566 1.01657 0.94240 1.20890 0.96161 1.00881 0.99306 1.17957 0.92704 0.92540 0.91650 1.19700 1.13710 1.15849 1.03751 0.90486 1.26728 0.97480 0.98471 0.95311 1.69889 1.35711 1.26938 1.13335 0.85271 0.78120 0.78179 0.78240 1.18589 1.19425 1.18285 1.20813 1.01850 1.04011 0.95999 1.20705 0.99161 1.01003 0.97355 1.48674 1.05632 1.04799 1.56951 1.22125 0.83417 0.95196 1.04327 1.77241 0.87445 1.23990 1.27402 0.89956 0.88622 0.90918 0.82378 0.87113 0.91972 0.83564 0.88221 0.92131 0.76624 0.90912 0.91510 0.87772 0.87397 0.90245 0.87501 0.84995 0.90046 0.88843 0.87446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.91 10.45 71.23 0.74 -0.16 16 2 C 0.06 1.14 7.22 43.10 0.31 1.45 16 3 C -0.27 -5.05 10.65 21.99 0.23 -4.81 16 4 C 0.08 1.45 6.44 41.40 0.27 1.71 16 5 C 0.13 1.47 5.86 85.56 0.50 1.97 16 6 N -0.69 -9.87 6.49 -517.93 -3.36 -13.23 16 7 C 0.04 0.57 5.36 86.30 0.46 1.03 16 8 C 0.12 2.52 3.49 30.59 0.11 2.63 16 9 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 10 O -0.57 -12.79 12.82 -144.33 -1.85 -14.65 16 11 C 0.03 0.77 4.36 71.98 0.31 1.08 16 12 O -0.33 -12.80 10.09 -85.36 -0.86 -13.66 16 13 C 0.00 0.04 6.71 22.79 0.15 0.19 16 14 C -0.14 -6.70 9.92 22.11 0.22 -6.48 16 15 C -0.15 -8.23 8.64 22.49 0.19 -8.04 16 16 C 0.05 2.90 5.57 -21.28 -0.12 2.79 16 17 C -0.50 -26.95 9.04 23.40 0.21 -26.74 16 18 H 0.08 3.96 7.91 -2.91 -0.02 3.93 16 19 C 0.03 1.72 5.13 85.23 0.44 2.16 16 20 N -0.83 -44.02 10.96 21.82 0.24 -43.78 16 21 Si 0.98 38.23 29.60 68.60 2.03 40.26 16 22 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 23 H -0.27 -10.00 7.11 99.48 0.71 -9.29 16 24 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 25 C -0.21 -9.93 9.74 22.48 0.22 -9.71 16 26 C -0.16 -6.92 8.96 22.11 0.20 -6.72 16 27 N -0.38 -6.94 4.01 -356.04 -1.43 -8.37 16 28 C 0.09 0.93 11.27 127.77 1.44 2.37 16 29 N -0.34 -7.81 12.58 -47.39 -0.60 -8.41 16 30 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 34 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.06 0.48 7.24 -2.39 -0.02 0.46 16 36 H 0.35 5.37 8.28 -89.70 -0.74 4.63 16 37 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 39 H 0.38 5.69 9.05 -74.06 -0.67 5.02 16 40 H 0.07 1.71 7.63 -2.38 -0.02 1.70 16 41 H 0.07 1.55 7.66 -2.39 -0.02 1.53 16 42 H 0.10 4.83 8.06 -2.91 -0.02 4.81 16 43 H 0.11 6.06 6.16 -2.91 -0.02 6.04 16 44 H 0.29 13.79 8.30 -92.70 -0.77 13.02 16 45 H 0.11 4.72 8.06 -2.91 -0.02 4.70 16 46 H 0.13 4.43 6.27 -2.91 -0.02 4.41 16 47 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 48 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 49 H 0.11 0.56 7.15 -2.39 -0.02 0.54 16 Total: -1.00 -71.83 409.79 -0.37 -72.20 By element: Atomic # 1 Polarization: 35.35 SS G_CDS: -0.44 Total: 34.91 kcal Atomic # 6 Polarization: -51.17 SS G_CDS: 5.90 Total: -45.27 kcal Atomic # 7 Polarization: -68.64 SS G_CDS: -5.15 Total: -73.79 kcal Atomic # 8 Polarization: -25.59 SS G_CDS: -2.71 Total: -28.31 kcal Atomic # 14 Polarization: 38.23 SS G_CDS: 2.03 Total: 40.26 kcal Total: -71.83 -0.37 -72.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564870059.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.274 kcal (2) G-P(sol) polarization free energy of solvation -71.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 24.24 seconds