Wall clock time and date at job start Wed Apr 1 2020 06:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30840 * 125.89838 * 2 1 4 4 N 1.40082 * 108.20727 * 180.14560 * 3 2 1 5 5 H 0.97002 * 126.04347 * 179.85722 * 4 3 2 6 6 C 1.34950 * 107.92536 * 359.59310 * 4 3 2 7 7 C 1.35326 * 107.74454 * 0.23985 * 6 4 3 8 8 C 1.50696 * 126.03981 * 179.97438 * 7 6 4 9 9 N 1.46900 * 109.46871 * 105.55573 * 8 7 6 10 10 C 1.46895 * 111.00305 * 287.82557 * 9 8 7 11 11 C 1.46899 * 110.99713 * 163.87292 * 9 8 7 12 12 C 1.53003 * 109.47153 * 190.00151 * 11 9 8 13 13 H 1.09004 * 109.47110 * 305.00220 * 12 11 9 14 14 O 1.42900 * 109.47177 * 64.99820 * 12 11 9 15 15 C 1.52997 * 109.47519 * 184.99772 * 12 11 9 16 16 O 1.42899 * 109.47202 * 174.99923 * 15 12 11 17 17 C 1.35679 * 116.99579 * 179.97438 * 16 15 12 18 18 C 1.39312 * 119.82189 * 359.72892 * 17 16 15 19 19 C 1.36439 * 120.18423 * 179.75883 * 18 17 16 20 20 C 1.40826 * 119.81302 * 0.51043 * 19 18 17 21 21 C 1.41216 * 120.17859 * 179.71846 * 20 19 18 22 22 H 1.07994 * 120.00336 * 26.33622 * 21 20 19 23 23 C 1.39896 * 119.99692 * 206.33125 * 21 20 19 24 24 N 1.30881 * 120.00260 * 13.52167 * 23 21 20 25 25 Si 1.86801 * 119.99905 * 193.51493 * 23 21 20 26 26 H 1.48507 * 109.46828 * 90.00221 * 25 23 21 27 27 H 1.48495 * 109.47485 * 210.00321 * 25 23 21 28 28 H 1.48498 * 109.46882 * 330.00874 * 25 23 21 29 29 C 1.40836 * 119.64127 * 359.74048 * 20 19 18 30 30 C 1.36433 * 119.81230 * 0.02562 * 29 20 19 31 31 H 1.08997 * 109.47188 * 274.69530 * 1 2 3 32 32 H 1.09004 * 109.47183 * 34.70057 * 1 2 3 33 33 H 1.09004 * 109.46970 * 154.69440 * 1 2 3 34 34 H 1.07993 * 126.12635 * 180.26574 * 6 4 3 35 35 H 1.08996 * 109.47224 * 225.55479 * 8 7 6 36 36 H 1.09007 * 109.47180 * 345.55824 * 8 7 6 37 37 H 1.08998 * 109.47606 * 61.26524 * 10 9 8 38 38 H 1.09001 * 109.47697 * 181.26916 * 10 9 8 39 39 H 1.09006 * 109.46972 * 301.26459 * 10 9 8 40 40 H 1.09009 * 109.47176 * 309.99883 * 11 9 8 41 41 H 1.08995 * 109.47581 * 70.00201 * 11 9 8 42 42 H 0.96701 * 114.00027 * 59.99815 * 14 12 11 43 43 H 1.08998 * 109.47157 * 295.00235 * 15 12 11 44 44 H 1.09008 * 109.46988 * 54.99629 * 15 12 11 45 45 H 1.07999 * 119.90363 * 0.02562 * 18 17 16 46 46 H 1.08005 * 120.09008 * 180.24999 * 19 18 17 47 47 H 0.96995 * 119.99751 * 179.97438 * 24 23 21 48 48 H 1.08002 * 120.09441 * 179.97438 * 29 20 19 49 49 H 1.07999 * 119.91045 * 179.97438 * 30 29 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6087 0.6342 -0.0034 5 1 4.3908 1.2080 -0.0061 6 6 3.6143 -0.7153 0.0037 7 6 2.3271 -1.1330 0.0060 8 6 1.8599 -2.5657 0.0130 9 7 1.3552 -2.9096 1.3490 10 6 2.4572 -3.0325 2.3125 11 6 0.5523 -4.1390 1.3080 12 6 -0.1573 -4.3298 2.6501 13 1 0.5780 -4.3174 3.4547 14 8 -1.0966 -3.2711 2.8470 15 6 -0.8930 -5.6712 2.6520 16 8 -1.4582 -5.9027 3.9438 17 6 -2.1498 -7.0573 4.1156 18 6 -2.2851 -7.9484 3.0534 19 6 -2.9749 -9.1138 3.2193 20 6 -3.5600 -9.4098 4.4656 21 6 -4.2806 -10.6110 4.6442 22 1 -4.0535 -11.4728 4.0342 23 6 -5.2887 -10.6847 5.6114 24 7 -5.7472 -9.5903 6.1634 25 14 -5.9804 -12.3453 6.1148 26 1 -5.1930 -12.8852 7.2524 27 1 -7.3986 -12.1870 6.5254 28 1 -5.8991 -13.2839 4.9670 29 6 -3.4229 -8.5010 5.5328 30 6 -2.7259 -7.3423 5.3517 31 1 -0.3633 0.0841 1.0242 32 1 -0.3634 0.8449 -0.5851 33 1 -0.3633 -0.9291 -0.4393 34 1 4.4892 -1.3484 0.0074 35 1 1.0630 -2.6916 -0.7199 36 1 2.6935 -3.2209 -0.2403 37 1 2.9791 -2.0788 2.3913 38 1 2.0578 -3.3096 3.2881 39 1 3.1526 -3.8003 1.9732 40 1 -0.1892 -4.0624 0.5127 41 1 1.2033 -4.9920 1.1168 42 1 -1.7818 -3.2216 2.1664 43 1 -1.6875 -5.6509 1.9061 44 1 -0.1914 -6.4707 2.4137 45 1 -1.8391 -7.7180 2.0972 46 1 -3.0754 -9.8055 2.3959 47 1 -6.4464 -9.6414 6.8337 48 1 -3.8690 -8.7204 6.4916 49 1 -2.6202 -6.6441 6.1688 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602937646.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:05:32 Heat of formation + Delta-G solvation = 11.054932 kcal Electronic energy + Delta-G solvation = -28998.351368 eV Core-core repulsion = 24927.295445 eV Total energy + Delta-G solvation = -4071.055924 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 9.78 seconds Orbital eigenvalues (eV) -41.52800 -39.18135 -38.18138 -36.58384 -35.71210 -33.28216 -33.16940 -31.60958 -30.31233 -29.49885 -28.93412 -28.08745 -27.41840 -26.20336 -24.65452 -23.04376 -21.39020 -21.21609 -20.61747 -20.54391 -19.64438 -18.01738 -17.34506 -17.11339 -16.43288 -16.32956 -15.69511 -15.33408 -15.21275 -14.85832 -14.60715 -14.38644 -14.04479 -13.92212 -13.90539 -13.26017 -13.15932 -12.94722 -12.91411 -12.82503 -12.31504 -12.22936 -12.14020 -11.90535 -11.87212 -11.73029 -11.71036 -11.31785 -11.14224 -10.93915 -10.83052 -10.71953 -10.55134 -9.95681 -9.86873 -9.80064 -9.59235 -9.30344 -9.04918 -8.85047 -8.44792 -7.63114 -6.98677 -6.67452 -4.25642 1.58796 2.42485 2.60264 2.79119 2.96157 3.09844 3.13015 3.22087 3.57072 3.96960 4.14399 4.44274 4.48339 4.55380 4.65698 4.75904 4.85381 4.97906 5.05085 5.16044 5.18177 5.24053 5.32944 5.41163 5.43228 5.48977 5.57879 5.63217 5.68316 5.71620 5.75403 5.80461 5.81613 6.06900 6.07998 6.23921 6.41917 6.73539 6.82162 6.83360 6.97765 6.98968 7.12740 7.20912 7.43498 7.48722 7.57440 7.79719 7.82845 8.02290 8.22804 8.47103 8.67230 8.92187 9.00054 10.26694 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.036995 B = 0.001588 C = 0.001573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.669748 B =17625.664142 C =17793.833751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.103 3.897 3 N -0.302 5.302 4 N -0.481 5.481 5 H 0.438 0.562 6 C 0.060 3.940 7 C -0.224 4.224 8 C 0.133 3.867 9 N -0.524 5.524 10 C 0.024 3.976 11 C 0.026 3.974 12 C 0.116 3.884 13 H 0.104 0.896 14 O -0.538 6.538 15 C 0.038 3.962 16 O -0.317 6.317 17 C -0.005 4.005 18 C -0.171 4.171 19 C -0.196 4.196 20 C 0.085 3.915 21 C -0.463 4.463 22 H 0.075 0.925 23 C 0.072 3.928 24 N -0.804 5.804 25 Si 0.910 3.090 26 H -0.269 1.269 27 H -0.279 1.279 28 H -0.264 1.264 29 C -0.129 4.129 30 C -0.122 4.122 31 H 0.083 0.917 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.172 0.828 35 H 0.080 0.920 36 H 0.039 0.961 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.023 0.977 40 H 0.081 0.919 41 H 0.044 0.956 42 H 0.369 0.631 43 H 0.053 0.947 44 H 0.055 0.945 45 H 0.092 0.908 46 H 0.094 0.906 47 H 0.279 0.721 48 H 0.129 0.871 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.221 14.702 -12.281 25.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.064 4.064 3 N -0.126 5.126 4 N -0.188 5.188 5 H 0.281 0.719 6 C -0.088 4.088 7 C -0.236 4.236 8 C 0.004 3.996 9 N -0.247 5.247 10 C -0.124 4.124 11 C -0.102 4.102 12 C 0.056 3.944 13 H 0.122 0.878 14 O -0.342 6.342 15 C -0.040 4.040 16 O -0.232 6.232 17 C -0.048 4.048 18 C -0.190 4.190 19 C -0.215 4.215 20 C 0.083 3.917 21 C -0.494 4.494 22 H 0.093 0.907 23 C -0.143 4.143 24 N -0.431 5.431 25 Si 0.735 3.265 26 H -0.194 1.194 27 H -0.204 1.204 28 H -0.188 1.188 29 C -0.148 4.148 30 C -0.141 4.141 31 H 0.102 0.898 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.189 0.811 35 H 0.098 0.902 36 H 0.057 0.943 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.041 0.959 40 H 0.100 0.900 41 H 0.063 0.937 42 H 0.216 0.784 43 H 0.071 0.929 44 H 0.073 0.927 45 H 0.111 0.889 46 H 0.112 0.888 47 H 0.090 0.910 48 H 0.146 0.854 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 16.162 16.667 -11.299 25.819 hybrid contribution 0.428 -2.319 -0.786 2.486 sum 16.590 14.348 -12.084 25.042 Atomic orbital electron populations 1.20148 0.86383 1.02717 1.03527 1.22264 0.97166 0.89809 0.97173 1.77319 0.86574 1.22667 1.26070 1.46165 1.07421 1.05326 1.59873 0.71859 1.22369 0.99171 0.85496 1.01814 1.19819 0.91517 0.96035 1.16222 1.20285 0.98451 0.90476 0.90359 1.61815 1.22505 1.33294 1.07105 1.22425 0.92574 1.00702 0.96742 1.22755 0.97626 0.91274 0.98579 1.21875 0.90860 0.85017 0.96631 0.87832 1.86646 1.42424 1.51940 1.53205 1.23136 0.97117 0.97082 0.86648 1.85895 1.68110 1.38758 1.30480 1.18652 1.02948 0.87413 0.95793 1.20394 1.05118 0.97019 0.96451 1.20576 1.06495 0.97415 0.97059 1.17614 0.90768 0.93209 0.90101 1.19462 1.15210 0.98078 1.16609 0.90653 1.25869 0.95800 0.97920 0.94756 1.69806 1.22615 1.28591 1.22073 0.86290 0.78188 0.82349 0.79705 1.19404 1.20381 1.18788 1.21058 0.99781 0.94068 0.99938 1.19871 1.01342 0.98654 0.94186 0.89825 0.91515 0.90472 0.81132 0.90158 0.94292 0.91535 0.90956 0.95863 0.90020 0.93743 0.78409 0.92887 0.92691 0.88947 0.88787 0.90983 0.85374 0.88412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.58 10.29 36.00 0.37 -0.21 16 2 C 0.10 1.04 7.22 -82.41 -0.59 0.45 16 3 N -0.30 -3.28 12.70 33.67 0.43 -2.85 16 4 N -0.48 -3.62 7.36 30.45 0.22 -3.40 16 5 H 0.44 1.88 8.96 -182.61 -1.64 0.24 16 6 C 0.06 0.41 11.68 -17.22 -0.20 0.21 16 7 C -0.22 -1.93 4.85 -105.05 -0.51 -2.44 16 8 C 0.13 1.02 5.10 -4.98 -0.03 1.00 16 9 N -0.52 -4.77 4.65 -244.37 -1.14 -5.90 16 10 C 0.02 0.21 9.22 60.06 0.55 0.76 16 11 C 0.03 0.24 4.59 -3.82 -0.02 0.22 16 12 C 0.12 1.42 3.21 -26.73 -0.09 1.33 16 13 H 0.10 1.37 6.24 -51.93 -0.32 1.04 16 14 O -0.54 -7.29 13.25 -40.09 -0.53 -7.82 16 15 C 0.04 0.56 4.36 37.16 0.16 0.72 16 16 O -0.32 -6.45 10.09 -23.60 -0.24 -6.69 16 17 C 0.00 -0.11 6.71 -38.78 -0.26 -0.37 16 18 C -0.17 -3.82 8.96 -39.83 -0.36 -4.18 16 19 C -0.20 -4.78 9.74 -39.25 -0.38 -5.17 16 20 C 0.09 2.28 5.57 -106.81 -0.59 1.69 16 21 C -0.46 -12.31 9.05 -37.83 -0.34 -12.65 16 22 H 0.08 1.92 7.88 -52.49 -0.41 1.51 16 23 C 0.07 1.83 5.21 -17.34 -0.09 1.74 16 24 N -0.80 -20.95 10.82 55.55 0.60 -20.35 16 25 Si 0.91 18.79 29.58 -169.99 -5.03 13.76 16 26 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 27 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 28 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 29 C -0.13 -3.39 8.63 -39.25 -0.34 -3.73 16 30 C -0.12 -2.98 9.92 -39.83 -0.40 -3.37 16 31 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.56 7.54 -51.93 -0.39 0.17 16 34 H 0.17 0.62 8.06 -52.49 -0.42 0.19 16 35 H 0.08 0.57 7.43 -51.93 -0.39 0.19 16 36 H 0.04 0.26 7.99 -51.93 -0.42 -0.15 16 37 H 0.07 0.60 7.36 -51.93 -0.38 0.22 16 38 H 0.07 0.72 6.16 -51.93 -0.32 0.40 16 39 H 0.02 0.18 8.09 -51.93 -0.42 -0.24 16 40 H 0.08 0.64 7.86 -51.92 -0.41 0.23 16 41 H 0.04 0.38 8.12 -51.93 -0.42 -0.04 16 42 H 0.37 3.78 9.05 45.56 0.41 4.20 16 43 H 0.05 0.75 7.63 -51.93 -0.40 0.35 16 44 H 0.05 0.78 7.66 -51.92 -0.40 0.38 16 45 H 0.09 1.76 6.27 -52.49 -0.33 1.43 16 46 H 0.09 2.14 8.06 -52.48 -0.42 1.72 16 47 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 48 H 0.13 3.45 6.12 -52.49 -0.32 3.13 16 49 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 LS Contribution 403.20 15.07 6.08 6.08 Total: -1.00 -32.46 403.20 -10.51 -42.98 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -7.80 Total: 8.20 kcal Atomic # 6 Polarization: -20.89 SS G_CDS: -3.11 Total: -24.00 kcal Atomic # 7 Polarization: -32.61 SS G_CDS: 0.12 Total: -32.50 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: -0.77 Total: -14.51 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.03 Total: 13.76 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.46 -10.51 -42.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602937646.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.031 kcal (2) G-P(sol) polarization free energy of solvation -32.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.78 seconds