Wall clock time and date at job start Wed Apr 1 2020 06:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30840 * 125.89838 * 2 1 4 4 N 1.40082 * 108.20727 * 180.14560 * 3 2 1 5 5 H 0.97002 * 126.04347 * 179.85722 * 4 3 2 6 6 C 1.34950 * 107.92536 * 359.59310 * 4 3 2 7 7 C 1.35326 * 107.74454 * 0.23985 * 6 4 3 8 8 C 1.50696 * 126.03981 * 179.97438 * 7 6 4 9 9 N 1.46900 * 109.46871 * 105.55573 * 8 7 6 10 10 C 1.46895 * 111.00305 * 287.82557 * 9 8 7 11 11 C 1.46899 * 110.99713 * 163.87292 * 9 8 7 12 12 C 1.53003 * 109.47153 * 190.00151 * 11 9 8 13 13 H 1.09004 * 109.47110 * 305.00220 * 12 11 9 14 14 O 1.42900 * 109.47177 * 64.99820 * 12 11 9 15 15 C 1.52997 * 109.47519 * 184.99772 * 12 11 9 16 16 O 1.42899 * 109.47202 * 174.99923 * 15 12 11 17 17 C 1.35679 * 116.99579 * 179.97438 * 16 15 12 18 18 C 1.39312 * 119.82189 * 359.72892 * 17 16 15 19 19 C 1.36439 * 120.18423 * 179.75883 * 18 17 16 20 20 C 1.40826 * 119.81302 * 0.51043 * 19 18 17 21 21 C 1.41216 * 120.17859 * 179.71846 * 20 19 18 22 22 H 1.07994 * 120.00336 * 26.33622 * 21 20 19 23 23 C 1.39896 * 119.99692 * 206.33125 * 21 20 19 24 24 N 1.30881 * 120.00260 * 13.52167 * 23 21 20 25 25 Si 1.86801 * 119.99905 * 193.51493 * 23 21 20 26 26 H 1.48507 * 109.46828 * 90.00221 * 25 23 21 27 27 H 1.48495 * 109.47485 * 210.00321 * 25 23 21 28 28 H 1.48498 * 109.46882 * 330.00874 * 25 23 21 29 29 C 1.40836 * 119.64127 * 359.74048 * 20 19 18 30 30 C 1.36433 * 119.81230 * 0.02562 * 29 20 19 31 31 H 1.08997 * 109.47188 * 274.69530 * 1 2 3 32 32 H 1.09004 * 109.47183 * 34.70057 * 1 2 3 33 33 H 1.09004 * 109.46970 * 154.69440 * 1 2 3 34 34 H 1.07993 * 126.12635 * 180.26574 * 6 4 3 35 35 H 1.08996 * 109.47224 * 225.55479 * 8 7 6 36 36 H 1.09007 * 109.47180 * 345.55824 * 8 7 6 37 37 H 1.08998 * 109.47606 * 61.26524 * 10 9 8 38 38 H 1.09001 * 109.47697 * 181.26916 * 10 9 8 39 39 H 1.09006 * 109.46972 * 301.26459 * 10 9 8 40 40 H 1.09009 * 109.47176 * 309.99883 * 11 9 8 41 41 H 1.08995 * 109.47581 * 70.00201 * 11 9 8 42 42 H 0.96701 * 114.00027 * 59.99815 * 14 12 11 43 43 H 1.08998 * 109.47157 * 295.00235 * 15 12 11 44 44 H 1.09008 * 109.46988 * 54.99629 * 15 12 11 45 45 H 1.07999 * 119.90363 * 0.02562 * 18 17 16 46 46 H 1.08005 * 120.09008 * 180.24999 * 19 18 17 47 47 H 0.96995 * 119.99751 * 179.97438 * 24 23 21 48 48 H 1.08002 * 120.09441 * 179.97438 * 29 20 19 49 49 H 1.07999 * 119.91045 * 179.97438 * 30 29 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6087 0.6342 -0.0034 5 1 4.3908 1.2080 -0.0061 6 6 3.6143 -0.7153 0.0037 7 6 2.3271 -1.1330 0.0060 8 6 1.8599 -2.5657 0.0130 9 7 1.3552 -2.9096 1.3490 10 6 2.4572 -3.0325 2.3125 11 6 0.5523 -4.1390 1.3080 12 6 -0.1573 -4.3298 2.6501 13 1 0.5780 -4.3174 3.4547 14 8 -1.0966 -3.2711 2.8470 15 6 -0.8930 -5.6712 2.6520 16 8 -1.4582 -5.9027 3.9438 17 6 -2.1498 -7.0573 4.1156 18 6 -2.2851 -7.9484 3.0534 19 6 -2.9749 -9.1138 3.2193 20 6 -3.5600 -9.4098 4.4656 21 6 -4.2806 -10.6110 4.6442 22 1 -4.0535 -11.4728 4.0342 23 6 -5.2887 -10.6847 5.6114 24 7 -5.7472 -9.5903 6.1634 25 14 -5.9804 -12.3453 6.1148 26 1 -5.1930 -12.8852 7.2524 27 1 -7.3986 -12.1870 6.5254 28 1 -5.8991 -13.2839 4.9670 29 6 -3.4229 -8.5010 5.5328 30 6 -2.7259 -7.3423 5.3517 31 1 -0.3633 0.0841 1.0242 32 1 -0.3634 0.8449 -0.5851 33 1 -0.3633 -0.9291 -0.4393 34 1 4.4892 -1.3484 0.0074 35 1 1.0630 -2.6916 -0.7199 36 1 2.6935 -3.2209 -0.2403 37 1 2.9791 -2.0788 2.3913 38 1 2.0578 -3.3096 3.2881 39 1 3.1526 -3.8003 1.9732 40 1 -0.1892 -4.0624 0.5127 41 1 1.2033 -4.9920 1.1168 42 1 -1.7818 -3.2216 2.1664 43 1 -1.6875 -5.6509 1.9061 44 1 -0.1914 -6.4707 2.4137 45 1 -1.8391 -7.7180 2.0972 46 1 -3.0754 -9.8055 2.3959 47 1 -6.4464 -9.6414 6.8337 48 1 -3.8690 -8.7204 6.4916 49 1 -2.6202 -6.6441 6.1688 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602937646.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:05:31 Heat of formation + Delta-G solvation = -11.814386 kcal Electronic energy + Delta-G solvation = -28999.343056 eV Core-core repulsion = 24927.295445 eV Total energy + Delta-G solvation = -4072.047612 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.12767 -40.64250 -39.30960 -38.03561 -36.82349 -35.13864 -33.79855 -32.41896 -31.74700 -31.02286 -30.56391 -28.73696 -28.13066 -27.25495 -26.33481 -24.07211 -22.74203 -22.31240 -21.88085 -21.79293 -20.26950 -19.23207 -18.70493 -18.54262 -17.52299 -17.40453 -17.01956 -16.45788 -16.14602 -15.89947 -15.70631 -15.47743 -15.32770 -15.09211 -14.84886 -14.70851 -14.13642 -14.03015 -13.88989 -13.77266 -13.56012 -13.55082 -13.44169 -13.09890 -12.90526 -12.78873 -12.58883 -12.58707 -12.50955 -12.38239 -12.33455 -11.76341 -11.62509 -11.55408 -11.43658 -11.16254 -10.90356 -10.84138 -10.24858 -9.53858 -9.44450 -9.07909 -8.86859 -8.54436 -6.22352 0.96746 1.01400 1.05176 1.41146 1.53487 1.54675 1.76875 2.10705 2.24670 2.47968 2.76809 3.23711 3.62878 3.72473 3.87211 3.92786 4.00990 4.06334 4.12075 4.23754 4.31773 4.39927 4.40882 4.49499 4.51825 4.52982 4.62387 4.74268 4.79142 4.84834 4.89878 4.95111 5.04812 5.09054 5.11681 5.15336 5.17486 5.22382 5.24372 5.31615 5.61998 5.67102 5.79669 5.90452 6.08381 6.16370 6.21919 6.29357 6.52422 6.59719 6.81740 6.83744 6.97955 6.98651 7.13011 8.41650 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.036995 B = 0.001588 C = 0.001573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.669748 B =17625.664142 C =17793.833751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.085 3.915 3 N -0.344 5.344 4 N -0.476 5.476 5 H 0.450 0.550 6 C 0.073 3.927 7 C -0.243 4.243 8 C 0.138 3.862 9 N -0.536 5.536 10 C 0.027 3.973 11 C 0.036 3.964 12 C 0.124 3.876 13 H 0.090 0.910 14 O -0.560 6.560 15 C 0.029 3.971 16 O -0.332 6.332 17 C 0.006 3.994 18 C -0.167 4.167 19 C -0.203 4.203 20 C 0.050 3.950 21 C -0.498 4.498 22 H 0.076 0.924 23 C 0.030 3.970 24 N -0.838 5.838 25 Si 0.984 3.016 26 H -0.264 1.264 27 H -0.270 1.270 28 H -0.258 1.258 29 C -0.148 4.148 30 C -0.139 4.139 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.088 0.912 34 H 0.207 0.793 35 H 0.086 0.914 36 H 0.054 0.946 37 H 0.062 0.938 38 H 0.055 0.945 39 H 0.037 0.963 40 H 0.098 0.902 41 H 0.057 0.943 42 H 0.383 0.617 43 H 0.066 0.934 44 H 0.069 0.931 45 H 0.132 0.868 46 H 0.107 0.893 47 H 0.286 0.714 48 H 0.111 0.889 49 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.622 14.210 -14.112 26.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.082 4.082 3 N -0.169 5.169 4 N -0.184 5.184 5 H 0.296 0.704 6 C -0.076 4.076 7 C -0.255 4.255 8 C 0.010 3.990 9 N -0.260 5.260 10 C -0.121 4.121 11 C -0.092 4.092 12 C 0.064 3.936 13 H 0.108 0.892 14 O -0.366 6.366 15 C -0.047 4.047 16 O -0.248 6.248 17 C -0.038 4.038 18 C -0.185 4.185 19 C -0.222 4.222 20 C 0.048 3.952 21 C -0.528 4.528 22 H 0.094 0.906 23 C -0.183 4.183 24 N -0.465 5.465 25 Si 0.805 3.195 26 H -0.189 1.189 27 H -0.195 1.195 28 H -0.182 1.182 29 C -0.168 4.168 30 C -0.158 4.158 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.107 0.893 34 H 0.224 0.776 35 H 0.105 0.895 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.056 0.944 40 H 0.117 0.883 41 H 0.075 0.925 42 H 0.231 0.769 43 H 0.085 0.915 44 H 0.087 0.913 45 H 0.150 0.850 46 H 0.125 0.875 47 H 0.096 0.904 48 H 0.129 0.871 49 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 17.582 16.209 -13.155 27.293 hybrid contribution 0.142 -1.974 -0.290 2.001 sum 17.724 14.235 -13.445 26.411 Atomic orbital electron populations 1.20133 0.85997 1.03403 1.02896 1.22578 0.97827 0.90426 0.97327 1.77241 0.88102 1.23820 1.27741 1.46220 1.06975 1.06048 1.59164 0.70425 1.22927 0.99885 0.85331 0.99504 1.20024 0.92006 0.96179 1.17322 1.20279 0.99176 0.90096 0.89467 1.61751 1.22854 1.33364 1.08033 1.22358 0.92743 1.00921 0.96101 1.22622 0.97974 0.91834 0.96748 1.21826 0.90200 0.83285 0.98256 0.89190 1.86614 1.43275 1.52299 1.54417 1.23545 0.97784 0.99004 0.84415 1.85892 1.67731 1.37255 1.33910 1.18713 1.01729 0.88134 0.95202 1.20712 1.04152 0.95791 0.97890 1.20835 1.06298 0.98468 0.96636 1.17979 0.92045 0.93915 0.91236 1.19719 1.16479 0.98361 1.18259 0.90574 1.26741 0.95668 1.01733 0.94166 1.69878 1.23265 1.30750 1.22643 0.85168 0.77597 0.77348 0.79343 1.18859 1.19521 1.18160 1.20959 1.01100 0.95234 0.99497 1.20030 1.01729 0.98428 0.95585 0.90945 0.91383 0.89311 0.77621 0.89545 0.92760 0.91878 0.92575 0.94426 0.88327 0.92517 0.76875 0.91535 0.91281 0.85046 0.87473 0.90387 0.87124 0.87743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.07 10.29 71.24 0.73 -0.34 16 2 C 0.08 1.64 7.22 43.10 0.31 1.95 16 3 N -0.34 -7.28 12.70 -47.39 -0.60 -7.88 16 4 N -0.48 -6.44 7.36 -57.59 -0.42 -6.86 16 5 H 0.45 3.18 8.96 -213.33 -1.91 1.27 16 6 C 0.07 0.81 11.68 83.54 0.98 1.79 16 7 C -0.24 -3.70 4.85 -20.14 -0.10 -3.79 16 8 C 0.14 1.71 5.10 85.56 0.44 2.15 16 9 N -0.54 -8.44 4.65 -927.05 -4.31 -12.76 16 10 C 0.03 0.43 9.22 127.69 1.18 1.60 16 11 C 0.04 0.55 4.59 86.30 0.40 0.94 16 12 C 0.12 2.78 3.21 30.59 0.10 2.88 16 13 H 0.09 2.28 6.24 -2.38 -0.01 2.26 16 14 O -0.56 -14.38 13.25 -144.33 -1.91 -16.29 16 15 C 0.03 0.78 4.36 71.98 0.31 1.09 16 16 O -0.33 -13.05 10.09 -85.32 -0.86 -13.91 16 17 C 0.01 0.28 6.71 22.79 0.15 0.43 16 18 C -0.17 -7.16 8.96 22.11 0.20 -6.96 16 19 C -0.20 -9.81 9.74 22.48 0.22 -9.59 16 20 C 0.05 2.75 5.57 -21.28 -0.12 2.63 16 21 C -0.50 -27.04 9.05 23.40 0.21 -26.83 16 22 H 0.08 3.95 7.88 -2.91 -0.02 3.93 16 23 C 0.03 1.52 5.21 85.24 0.44 1.96 16 24 N -0.84 -44.83 10.82 21.82 0.24 -44.60 16 25 Si 0.98 38.74 29.58 68.60 2.03 40.77 16 26 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 27 H -0.27 -10.18 7.11 99.48 0.71 -9.48 16 28 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 29 C -0.15 -8.06 8.63 22.48 0.19 -7.87 16 30 C -0.14 -6.91 9.92 22.11 0.22 -6.69 16 31 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 33 H 0.09 1.17 7.54 -2.39 -0.02 1.16 16 34 H 0.21 0.66 8.06 -2.91 -0.02 0.64 16 35 H 0.09 0.96 7.43 -2.39 -0.02 0.94 16 36 H 0.05 0.52 7.99 -2.38 -0.02 0.50 16 37 H 0.06 1.03 7.36 -2.39 -0.02 1.01 16 38 H 0.06 1.06 6.16 -2.39 -0.01 1.05 16 39 H 0.04 0.48 8.09 -2.38 -0.02 0.46 16 40 H 0.10 1.17 7.86 -2.38 -0.02 1.15 16 41 H 0.06 0.74 8.12 -2.39 -0.02 0.72 16 42 H 0.38 7.17 9.05 -74.06 -0.67 6.50 16 43 H 0.07 1.65 7.63 -2.39 -0.02 1.63 16 44 H 0.07 1.71 7.66 -2.38 -0.02 1.69 16 45 H 0.13 4.52 6.27 -2.91 -0.02 4.50 16 46 H 0.11 4.78 8.06 -2.91 -0.02 4.76 16 47 H 0.29 13.88 8.30 -92.71 -0.77 13.11 16 48 H 0.11 6.28 6.12 -2.91 -0.02 6.26 16 49 H 0.10 4.89 8.06 -2.91 -0.02 4.87 16 Total: -1.00 -71.78 403.20 -1.58 -73.36 By element: Atomic # 1 Polarization: 34.39 SS G_CDS: -1.59 Total: 32.79 kcal Atomic # 6 Polarization: -50.50 SS G_CDS: 5.87 Total: -44.63 kcal Atomic # 7 Polarization: -66.99 SS G_CDS: -5.10 Total: -72.09 kcal Atomic # 8 Polarization: -27.43 SS G_CDS: -2.77 Total: -30.20 kcal Atomic # 14 Polarization: 38.74 SS G_CDS: 2.03 Total: 40.77 kcal Total: -71.78 -1.58 -73.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602937646.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.545 kcal (2) G-P(sol) polarization free energy of solvation -71.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds