Wall clock time and date at job start Wed Apr 1 2020 06:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38048 * 126.29440 * 2 1 4 4 C 1.47434 * 126.41092 * 0.02562 * 3 2 1 5 5 O 1.21604 * 119.99984 * 359.70855 * 4 3 2 6 6 N 1.34778 * 119.99758 * 179.71660 * 4 3 2 7 7 C 1.46503 * 119.99744 * 180.02562 * 6 4 3 8 8 H 1.08997 * 112.88655 * 23.80772 * 7 6 4 9 9 C 1.53853 * 113.58975 * 252.62579 * 7 6 4 10 10 H 1.08999 * 116.70969 * 150.46219 * 9 7 6 11 11 C 1.54414 * 112.96857 * 13.38502 * 9 7 6 12 12 C 1.54451 * 104.15002 * 266.40721 * 11 9 7 13 13 O 1.44365 * 104.81319 * 24.34594 * 12 11 9 14 14 C 1.44270 * 105.48601 * 319.48392 * 13 12 11 15 15 H 1.09007 * 114.87758 * 269.80684 * 14 13 12 16 16 C 1.52810 * 113.72329 * 133.01180 * 14 13 12 17 17 C 1.52968 * 121.10012 * 45.21609 * 16 14 13 18 18 C 1.53937 * 86.82178 * 100.61027 * 17 16 14 19 19 C 1.53159 * 121.00134 * 153.54249 * 16 14 13 20 20 C 1.41289 * 107.17212 * 179.76461 * 3 2 1 21 21 N 1.30439 * 108.02403 * 0.23594 * 20 3 2 22 22 N 1.34268 * 126.29263 * 180.18367 * 2 1 3 23 23 C 1.46497 * 125.75148 * 359.95430 * 22 2 1 24 24 C 1.50708 * 109.46931 * 270.30862 * 23 22 2 25 25 H 1.08000 * 119.99918 * 0.02562 * 24 23 22 26 26 C 1.37874 * 119.99700 * 180.02562 * 24 23 22 27 27 N 1.31513 * 119.99852 * 180.02562 * 26 24 23 28 28 Si 1.86802 * 120.00111 * 359.97438 * 26 24 23 29 29 H 1.48504 * 109.46735 * 90.00425 * 28 26 24 30 30 H 1.48502 * 109.47060 * 210.00064 * 28 26 24 31 31 H 1.48492 * 109.47237 * 330.00137 * 28 26 24 32 32 H 1.08997 * 109.47154 * 90.02281 * 1 2 3 33 33 H 1.08998 * 109.46943 * 210.02644 * 1 2 3 34 34 H 1.09001 * 109.47014 * 330.02246 * 1 2 3 35 35 H 0.96996 * 120.00272 * 359.97438 * 6 4 3 36 36 H 1.09004 * 110.49327 * 147.74205 * 11 9 7 37 37 H 1.08994 * 110.49676 * 25.07761 * 11 9 7 38 38 H 1.09000 * 110.37190 * 265.50740 * 12 11 9 39 39 H 1.08998 * 110.36595 * 143.17833 * 12 11 9 40 40 H 1.09002 * 113.65394 * 346.13315 * 17 16 14 41 41 H 1.08996 * 113.74154 * 215.10930 * 17 16 14 42 42 H 1.09002 * 113.58406 * 139.39429 * 18 17 16 43 43 H 1.09004 * 113.58652 * 270.12231 * 18 17 16 44 44 H 1.08993 * 113.65622 * 144.85347 * 19 16 14 45 45 H 1.09004 * 113.70436 * 13.76308 * 19 16 14 46 46 H 1.08005 * 125.98727 * 180.24624 * 20 3 2 47 47 H 1.08996 * 109.47331 * 30.31151 * 23 22 2 48 48 H 1.09000 * 109.47137 * 150.31174 * 23 22 2 49 49 H 0.97005 * 120.00096 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8858 2.5203 0.0005 5 8 0.6995 2.7878 -0.0043 6 7 2.7999 3.5107 0.0062 7 6 2.3644 4.9095 0.0073 8 1 1.3596 5.0403 0.4089 9 6 2.5888 5.6253 -1.3359 10 1 1.8946 6.4278 -1.5854 11 6 2.9139 4.6524 -2.4902 12 6 4.4574 4.6085 -2.5235 13 8 4.8660 4.9745 -1.1881 14 6 3.9810 6.0435 -0.7939 15 1 4.3335 7.0451 -1.0404 16 6 3.3923 5.8698 0.6055 17 6 4.2705 5.4507 1.7857 18 6 4.2842 6.9353 2.1922 19 6 2.9532 7.0817 1.4327 20 6 3.6590 0.6498 0.0055 21 7 3.6340 -0.6543 0.0035 22 7 2.3017 -1.0822 -0.0035 23 6 1.8501 -2.4758 -0.0070 24 6 1.6889 -2.9552 1.4127 25 1 1.9011 -2.2883 2.2352 26 6 1.2703 -4.2451 1.6613 27 7 1.1292 -4.6633 2.9002 28 14 0.9025 -5.3984 0.2386 29 1 2.1371 -6.1352 -0.1332 30 1 -0.1482 -6.3661 0.6448 31 1 0.4262 -4.6107 -0.9266 32 1 -0.3633 -0.0004 -1.0276 33 1 -0.3633 -0.8897 0.5142 34 1 -0.3633 0.8902 0.5135 35 1 3.7461 3.2974 0.0104 36 1 2.5226 5.0346 -3.4330 37 1 2.5084 3.6626 -2.2807 38 1 4.8419 5.3263 -3.2481 39 1 4.8032 3.6032 -2.7639 40 1 5.2479 5.0693 1.4899 41 1 3.7632 4.8054 2.5029 42 1 4.1928 7.0942 3.2667 43 1 5.1037 7.5013 1.7493 44 1 2.0745 6.8948 2.0498 45 1 2.8785 8.0029 0.8547 46 1 4.5449 1.2676 0.0107 47 1 0.8938 -2.5466 -0.5252 48 1 2.5870 -3.0953 -0.5181 49 1 0.8343 -5.5708 3.0752 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889692996.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:19:45 Heat of formation + Delta-G solvation = 43.401579 kcal Electronic energy + Delta-G solvation = -31211.896930 eV Core-core repulsion = 27142.243663 eV Total energy + Delta-G solvation = -4069.653268 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 21.57 seconds Orbital eigenvalues (eV) -41.94311 -40.76606 -38.40434 -37.89619 -34.66254 -33.91231 -32.53428 -31.97692 -31.22524 -30.76588 -27.94874 -26.82439 -25.92924 -25.27282 -24.31302 -23.01307 -22.30763 -22.02740 -20.41125 -19.63170 -19.21819 -18.41505 -17.32735 -17.21376 -16.49467 -16.25384 -15.98151 -15.29526 -15.15258 -14.99368 -14.75922 -14.68124 -14.26114 -14.00399 -13.69925 -13.38299 -13.02022 -12.79411 -12.68773 -12.60229 -12.51293 -12.24789 -12.15468 -12.09479 -11.86503 -11.76229 -11.59043 -11.35047 -11.21609 -10.91981 -10.84523 -10.66851 -10.59084 -10.38922 -10.23048 -10.09282 -9.79439 -9.75452 -9.39672 -8.85777 -8.85162 -8.63272 -7.95031 -6.33055 -4.37878 2.13654 2.74544 3.02639 3.11798 3.16824 3.19463 3.30589 3.55028 3.85078 3.97011 4.15377 4.31086 4.37659 4.51793 4.53481 4.63183 4.78796 4.92351 4.97158 5.03522 5.06437 5.10432 5.18407 5.22213 5.34986 5.42596 5.48739 5.53685 5.55416 5.58313 5.65218 5.68214 5.75616 5.80106 5.89206 5.95301 5.96554 6.02983 6.10768 6.20783 6.29239 6.43326 6.50648 6.57759 6.61610 6.76252 7.04670 7.18220 7.57739 7.83760 8.19984 8.29935 8.63360 8.70604 9.20828 10.79165 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.019427 B = 0.002633 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.920028 B =10633.096816 C =10956.251031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.169 3.831 3 C -0.329 4.329 4 C 0.605 3.395 5 O -0.556 6.556 6 N -0.705 5.705 7 C 0.155 3.845 8 H 0.104 0.896 9 C -0.152 4.152 10 H 0.113 0.887 11 C -0.146 4.146 12 C 0.050 3.950 13 O -0.356 6.356 14 C 0.074 3.926 15 H 0.090 0.910 16 C -0.111 4.111 17 C -0.120 4.120 18 C -0.140 4.140 19 C -0.105 4.105 20 C 0.062 3.938 21 N -0.293 5.293 22 N -0.314 5.314 23 C 0.225 3.775 24 C -0.546 4.546 25 H 0.082 0.918 26 C 0.081 3.919 27 N -0.883 5.883 28 Si 0.874 3.126 29 H -0.270 1.270 30 H -0.279 1.279 31 H -0.264 1.264 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.098 0.902 35 H 0.405 0.595 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.057 0.943 39 H 0.093 0.907 40 H 0.074 0.926 41 H 0.086 0.914 42 H 0.068 0.932 43 H 0.079 0.921 44 H 0.091 0.909 45 H 0.071 0.929 46 H 0.177 0.823 47 H 0.052 0.948 48 H 0.050 0.950 49 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.358 23.790 -8.963 25.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.032 3.968 3 C -0.344 4.344 4 C 0.395 3.605 5 O -0.436 6.436 6 N -0.356 5.356 7 C 0.048 3.952 8 H 0.122 0.878 9 C -0.172 4.172 10 H 0.131 0.869 11 C -0.183 4.183 12 C -0.027 4.027 13 O -0.275 6.275 14 C 0.016 3.984 15 H 0.108 0.892 16 C -0.112 4.112 17 C -0.157 4.157 18 C -0.177 4.177 19 C -0.143 4.143 20 C -0.125 4.125 21 N -0.112 5.112 22 N -0.091 5.091 23 C 0.106 3.894 24 C -0.584 4.584 25 H 0.100 0.900 26 C -0.124 4.124 27 N -0.519 5.519 28 Si 0.700 3.300 29 H -0.195 1.195 30 H -0.204 1.204 31 H -0.188 1.188 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.116 0.884 35 H 0.241 0.759 36 H 0.090 0.910 37 H 0.103 0.897 38 H 0.075 0.925 39 H 0.112 0.888 40 H 0.093 0.907 41 H 0.104 0.896 42 H 0.087 0.913 43 H 0.097 0.903 44 H 0.109 0.891 45 H 0.089 0.911 46 H 0.194 0.806 47 H 0.070 0.930 48 H 0.068 0.932 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.328 22.413 -8.721 24.437 hybrid contribution -0.173 -0.061 -0.767 0.788 sum 4.155 22.353 -9.488 24.636 Atomic orbital electron populations 1.20638 0.86805 1.05154 1.03150 1.21453 0.94920 0.86359 0.94023 1.19667 0.93082 0.92536 1.29131 1.17307 0.85034 0.83856 0.74282 1.90687 1.16718 1.84407 1.51761 1.45355 1.10144 1.03972 1.76142 1.21427 0.98596 0.80964 0.94215 0.87830 1.24512 0.98019 0.98963 0.95720 0.86872 1.22820 0.96040 1.01304 0.98179 1.23477 0.93738 1.00948 0.84519 1.88965 1.55299 1.52411 1.30824 1.23745 0.88832 0.91427 0.94359 0.89229 1.22966 0.97142 0.97823 0.93318 1.22576 1.00163 0.96477 0.96514 1.22839 0.97425 0.97163 1.00308 1.22595 0.98323 0.95944 0.97397 1.23755 0.96475 0.92481 0.99806 1.77146 0.98078 1.12406 1.23598 1.48910 1.02774 1.07504 1.49888 1.20149 0.95709 0.73377 1.00177 1.21107 1.48042 0.99195 0.90064 0.90007 1.24795 0.94283 0.97408 0.95872 1.69865 1.45119 1.18159 1.18764 0.86892 0.79075 0.81494 0.82587 1.19527 1.20406 1.18841 0.90573 0.89846 0.88380 0.75917 0.90983 0.89727 0.92458 0.88834 0.90710 0.89565 0.91298 0.90264 0.89085 0.91067 0.80640 0.93000 0.93164 0.91967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.76 9.34 36.00 0.34 -1.43 16 2 C 0.17 3.39 7.01 -81.60 -0.57 2.82 16 3 C -0.33 -5.94 6.13 -105.06 -0.64 -6.59 16 4 C 0.60 9.86 7.14 -12.51 -0.09 9.77 16 5 O -0.56 -10.32 14.44 5.27 0.08 -10.25 16 6 N -0.71 -8.88 3.40 -54.52 -0.19 -9.07 16 7 C 0.15 1.68 4.01 -67.56 -0.27 1.41 16 8 H 0.10 1.28 7.47 -51.93 -0.39 0.89 16 9 C -0.15 -1.36 5.08 -88.30 -0.45 -1.81 16 10 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 11 C -0.15 -1.36 6.27 -25.23 -0.16 -1.52 16 12 C 0.05 0.43 7.62 37.92 0.29 0.72 16 13 O -0.36 -3.57 9.69 -35.23 -0.34 -3.91 16 14 C 0.07 0.64 5.18 -25.69 -0.13 0.50 16 15 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 16 C -0.11 -0.97 0.83 -154.62 -0.13 -1.10 16 17 C -0.12 -1.09 7.36 -26.26 -0.19 -1.28 16 18 C -0.14 -1.02 8.08 -25.76 -0.21 -1.23 16 19 C -0.10 -0.74 7.85 -26.16 -0.21 -0.95 16 20 C 0.06 1.08 11.50 -16.98 -0.20 0.89 16 21 N -0.29 -6.21 12.50 30.86 0.39 -5.83 16 22 N -0.31 -6.94 3.56 -57.77 -0.21 -7.15 16 23 C 0.22 5.24 4.85 -5.19 -0.03 5.21 16 24 C -0.55 -14.98 9.94 -34.44 -0.34 -15.32 16 25 H 0.08 2.54 8.06 -52.49 -0.42 2.12 16 26 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 27 N -0.88 -25.87 13.96 55.43 0.77 -25.10 16 28 Si 0.87 19.79 27.47 -169.99 -4.67 15.12 16 29 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 30 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 31 H -0.26 -5.57 6.54 56.52 0.37 -5.20 16 32 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.08 1.54 7.71 -51.93 -0.40 1.14 16 34 H 0.10 1.74 6.50 -51.93 -0.34 1.40 16 35 H 0.40 4.80 6.29 -40.82 -0.26 4.54 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.08 1.00 6.47 -51.93 -0.34 0.66 16 38 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16 41 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.18 2.33 7.50 -52.48 -0.39 1.93 16 47 H 0.05 1.13 6.70 -51.93 -0.35 0.78 16 48 H 0.05 1.16 7.57 -51.93 -0.39 0.77 16 49 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 389.67 15.07 5.87 5.87 Total: -1.00 -31.60 389.67 -8.89 -40.49 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -7.51 Total: 7.58 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: -3.09 Total: -7.76 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: 0.77 Total: -47.15 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: -0.27 Total: -14.16 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -4.67 Total: 15.12 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.60 -8.89 -40.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889692996.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.897 kcal (2) G-P(sol) polarization free energy of solvation -31.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 21.57 seconds