Wall clock time and date at job start Wed Apr 1 2020 06:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38048 * 126.29440 * 2 1 4 4 C 1.47434 * 126.41092 * 0.02562 * 3 2 1 5 5 O 1.21604 * 119.99984 * 359.70855 * 4 3 2 6 6 N 1.34778 * 119.99758 * 179.71660 * 4 3 2 7 7 C 1.46503 * 119.99744 * 180.02562 * 6 4 3 8 8 H 1.08997 * 112.88655 * 23.80772 * 7 6 4 9 9 C 1.53853 * 113.58975 * 252.62579 * 7 6 4 10 10 H 1.08999 * 116.70969 * 150.46219 * 9 7 6 11 11 C 1.54414 * 112.96857 * 13.38502 * 9 7 6 12 12 C 1.54451 * 104.15002 * 266.40721 * 11 9 7 13 13 O 1.44365 * 104.81319 * 24.34594 * 12 11 9 14 14 C 1.44270 * 105.48601 * 319.48392 * 13 12 11 15 15 H 1.09007 * 114.87758 * 269.80684 * 14 13 12 16 16 C 1.52810 * 113.72329 * 133.01180 * 14 13 12 17 17 C 1.52968 * 121.10012 * 45.21609 * 16 14 13 18 18 C 1.53937 * 86.82178 * 100.61027 * 17 16 14 19 19 C 1.53159 * 121.00134 * 153.54249 * 16 14 13 20 20 C 1.41289 * 107.17212 * 179.76461 * 3 2 1 21 21 N 1.30439 * 108.02403 * 0.23594 * 20 3 2 22 22 N 1.34268 * 126.29263 * 180.18367 * 2 1 3 23 23 C 1.46497 * 125.75148 * 359.95430 * 22 2 1 24 24 C 1.50708 * 109.46931 * 270.30862 * 23 22 2 25 25 H 1.08000 * 119.99918 * 0.02562 * 24 23 22 26 26 C 1.37874 * 119.99700 * 180.02562 * 24 23 22 27 27 N 1.31513 * 119.99852 * 180.02562 * 26 24 23 28 28 Si 1.86802 * 120.00111 * 359.97438 * 26 24 23 29 29 H 1.48504 * 109.46735 * 90.00425 * 28 26 24 30 30 H 1.48502 * 109.47060 * 210.00064 * 28 26 24 31 31 H 1.48492 * 109.47237 * 330.00137 * 28 26 24 32 32 H 1.08997 * 109.47154 * 90.02281 * 1 2 3 33 33 H 1.08998 * 109.46943 * 210.02644 * 1 2 3 34 34 H 1.09001 * 109.47014 * 330.02246 * 1 2 3 35 35 H 0.96996 * 120.00272 * 359.97438 * 6 4 3 36 36 H 1.09004 * 110.49327 * 147.74205 * 11 9 7 37 37 H 1.08994 * 110.49676 * 25.07761 * 11 9 7 38 38 H 1.09000 * 110.37190 * 265.50740 * 12 11 9 39 39 H 1.08998 * 110.36595 * 143.17833 * 12 11 9 40 40 H 1.09002 * 113.65394 * 346.13315 * 17 16 14 41 41 H 1.08996 * 113.74154 * 215.10930 * 17 16 14 42 42 H 1.09002 * 113.58406 * 139.39429 * 18 17 16 43 43 H 1.09004 * 113.58652 * 270.12231 * 18 17 16 44 44 H 1.08993 * 113.65622 * 144.85347 * 19 16 14 45 45 H 1.09004 * 113.70436 * 13.76308 * 19 16 14 46 46 H 1.08005 * 125.98727 * 180.24624 * 20 3 2 47 47 H 1.08996 * 109.47331 * 30.31151 * 23 22 2 48 48 H 1.09000 * 109.47137 * 150.31174 * 23 22 2 49 49 H 0.97005 * 120.00096 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8858 2.5203 0.0005 5 8 0.6995 2.7878 -0.0043 6 7 2.7999 3.5107 0.0062 7 6 2.3644 4.9095 0.0073 8 1 1.3596 5.0403 0.4089 9 6 2.5888 5.6253 -1.3359 10 1 1.8946 6.4278 -1.5854 11 6 2.9139 4.6524 -2.4902 12 6 4.4574 4.6085 -2.5235 13 8 4.8660 4.9745 -1.1881 14 6 3.9810 6.0435 -0.7939 15 1 4.3335 7.0451 -1.0404 16 6 3.3923 5.8698 0.6055 17 6 4.2705 5.4507 1.7857 18 6 4.2842 6.9353 2.1922 19 6 2.9532 7.0817 1.4327 20 6 3.6590 0.6498 0.0055 21 7 3.6340 -0.6543 0.0035 22 7 2.3017 -1.0822 -0.0035 23 6 1.8501 -2.4758 -0.0070 24 6 1.6889 -2.9552 1.4127 25 1 1.9011 -2.2883 2.2352 26 6 1.2703 -4.2451 1.6613 27 7 1.1292 -4.6633 2.9002 28 14 0.9025 -5.3984 0.2386 29 1 2.1371 -6.1352 -0.1332 30 1 -0.1482 -6.3661 0.6448 31 1 0.4262 -4.6107 -0.9266 32 1 -0.3633 -0.0004 -1.0276 33 1 -0.3633 -0.8897 0.5142 34 1 -0.3633 0.8902 0.5135 35 1 3.7461 3.2974 0.0104 36 1 2.5226 5.0346 -3.4330 37 1 2.5084 3.6626 -2.2807 38 1 4.8419 5.3263 -3.2481 39 1 4.8032 3.6032 -2.7639 40 1 5.2479 5.0693 1.4899 41 1 3.7632 4.8054 2.5029 42 1 4.1928 7.0942 3.2667 43 1 5.1037 7.5013 1.7493 44 1 2.0745 6.8948 2.0498 45 1 2.8785 8.0029 0.8547 46 1 4.5449 1.2676 0.0107 47 1 0.8938 -2.5466 -0.5252 48 1 2.5870 -3.0953 -0.5181 49 1 0.8343 -5.5708 3.0752 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889692996.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:19:33 Heat of formation + Delta-G solvation = 23.748081 kcal Electronic energy + Delta-G solvation = -31212.749170 eV Core-core repulsion = 27142.243663 eV Total energy + Delta-G solvation = -4070.505507 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.76473 -42.22929 -39.68847 -38.56208 -35.82170 -35.58177 -34.09408 -33.25193 -32.78256 -31.48842 -29.69160 -28.31135 -26.58555 -26.15226 -25.20506 -24.70479 -23.38620 -22.93089 -21.53722 -20.72294 -20.59613 -19.36207 -19.29402 -18.48378 -17.43399 -17.06773 -16.93383 -16.64892 -16.38270 -16.09239 -15.94409 -15.79277 -15.54529 -15.23666 -14.93406 -14.68946 -14.46924 -14.15331 -14.00669 -13.81025 -13.70176 -13.44702 -13.25914 -13.17328 -13.01761 -12.80569 -12.60052 -12.59473 -12.41399 -12.14789 -12.04705 -11.86195 -11.76186 -11.63913 -11.38762 -11.25379 -10.93620 -10.84557 -10.76975 -10.43759 -10.28003 -9.94581 -9.44125 -8.44293 -6.56701 0.63894 1.27907 1.32491 1.35392 1.44058 1.60259 2.23507 2.25174 2.50973 2.71327 2.88200 3.24564 3.54834 3.64908 3.70408 3.71673 3.82307 3.87967 3.99089 4.09402 4.11384 4.17354 4.29528 4.36965 4.41509 4.46505 4.48453 4.57688 4.64278 4.66685 4.72207 4.80210 4.87428 4.89742 4.93568 4.94754 5.06064 5.09150 5.12856 5.14504 5.16323 5.17563 5.20283 5.43344 5.55756 5.57803 5.65795 5.82122 5.95851 6.19530 6.46467 6.64717 6.78581 7.07329 7.37614 8.72263 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.019427 B = 0.002633 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.920028 B =10633.096816 C =10956.251031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.150 3.850 3 C -0.329 4.329 4 C 0.606 3.394 5 O -0.582 6.582 6 N -0.687 5.687 7 C 0.137 3.863 8 H 0.086 0.914 9 C -0.146 4.146 10 H 0.132 0.868 11 C -0.146 4.146 12 C 0.050 3.950 13 O -0.374 6.374 14 C 0.081 3.919 15 H 0.112 0.888 16 C -0.106 4.106 17 C -0.128 4.128 18 C -0.132 4.132 19 C -0.098 4.098 20 C 0.080 3.920 21 N -0.331 5.331 22 N -0.337 5.337 23 C 0.234 3.766 24 C -0.555 4.555 25 H 0.025 0.975 26 C 0.023 3.977 27 N -0.935 5.935 28 Si 0.950 3.050 29 H -0.263 1.263 30 H -0.274 1.274 31 H -0.234 1.234 32 H 0.100 0.900 33 H 0.071 0.929 34 H 0.095 0.905 35 H 0.409 0.591 36 H 0.087 0.913 37 H 0.056 0.944 38 H 0.076 0.924 39 H 0.092 0.908 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.072 0.928 43 H 0.090 0.910 44 H 0.088 0.912 45 H 0.092 0.908 46 H 0.216 0.784 47 H 0.073 0.927 48 H 0.056 0.944 49 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.878 25.863 -11.462 28.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.014 3.986 3 C -0.344 4.344 4 C 0.396 3.604 5 O -0.463 6.463 6 N -0.337 5.337 7 C 0.031 3.969 8 H 0.104 0.896 9 C -0.166 4.166 10 H 0.150 0.850 11 C -0.184 4.184 12 C -0.026 4.026 13 O -0.293 6.293 14 C 0.023 3.977 15 H 0.130 0.870 16 C -0.107 4.107 17 C -0.166 4.166 18 C -0.170 4.170 19 C -0.136 4.136 20 C -0.107 4.107 21 N -0.150 5.150 22 N -0.114 5.114 23 C 0.114 3.886 24 C -0.593 4.593 25 H 0.043 0.957 26 C -0.177 4.177 27 N -0.573 5.573 28 Si 0.771 3.229 29 H -0.188 1.188 30 H -0.199 1.199 31 H -0.157 1.157 32 H 0.118 0.882 33 H 0.090 0.910 34 H 0.114 0.886 35 H 0.247 0.753 36 H 0.105 0.895 37 H 0.075 0.925 38 H 0.095 0.905 39 H 0.110 0.890 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.109 0.891 44 H 0.106 0.894 45 H 0.110 0.890 46 H 0.233 0.767 47 H 0.091 0.909 48 H 0.074 0.926 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.875 24.545 -11.227 27.428 hybrid contribution -0.280 -0.550 0.119 0.628 sum 4.595 23.995 -11.108 26.838 Atomic orbital electron populations 1.20625 0.85641 1.04327 1.04430 1.21967 0.95993 0.86555 0.94060 1.19968 0.93178 0.93237 1.28048 1.17110 0.85089 0.83768 0.74442 1.90670 1.17777 1.84627 1.53240 1.45196 1.09702 1.04347 1.74454 1.21676 0.98501 0.80135 0.96564 0.89596 1.24533 0.98803 0.98945 0.94280 0.84972 1.22798 0.96668 0.99885 0.99026 1.23546 0.93085 1.01564 0.84414 1.88950 1.55720 1.53052 1.31558 1.23819 0.88281 0.92008 0.93586 0.87021 1.23027 0.96258 0.97835 0.93602 1.22577 0.99674 0.97683 0.96623 1.22822 0.97888 0.95506 1.00739 1.22600 0.98068 0.95909 0.97009 1.24359 0.97584 0.91628 0.97148 1.77086 0.98109 1.14238 1.25594 1.48780 1.03411 1.07322 1.51919 1.19910 0.96787 0.74520 0.97379 1.21196 1.48251 0.98864 0.90961 0.95668 1.25829 0.93564 0.99204 0.99104 1.70026 1.46529 1.19028 1.21715 0.85688 0.79166 0.78834 0.79211 1.18789 1.19921 1.15707 0.88191 0.91048 0.88623 0.75343 0.89486 0.92525 0.90538 0.88976 0.91377 0.91214 0.90951 0.89144 0.89399 0.88984 0.76743 0.90930 0.92627 0.91615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.30 9.34 71.23 0.67 -2.64 16 2 C 0.15 6.08 7.01 42.14 0.30 6.37 16 3 C -0.33 -11.92 6.13 -20.15 -0.12 -12.05 16 4 C 0.61 19.76 7.14 86.67 0.62 20.38 16 5 O -0.58 -21.75 14.44 -4.04 -0.06 -21.81 16 6 N -0.69 -16.90 3.40 -444.64 -1.51 -18.41 16 7 C 0.14 2.83 4.01 45.23 0.18 3.01 16 8 H 0.09 2.10 7.47 -2.39 -0.02 2.08 16 9 C -0.15 -2.27 5.08 -9.29 -0.05 -2.31 16 10 H 0.13 1.57 8.14 -2.39 -0.02 1.56 16 11 C -0.15 -2.42 6.27 31.57 0.20 -2.23 16 12 C 0.05 0.74 7.62 72.48 0.55 1.29 16 13 O -0.37 -6.57 9.69 -148.98 -1.44 -8.02 16 14 C 0.08 1.14 5.18 31.27 0.16 1.30 16 15 H 0.11 1.17 8.14 -2.38 -0.02 1.15 16 16 C -0.11 -1.65 0.83 -52.25 -0.04 -1.69 16 17 C -0.13 -2.17 7.36 30.90 0.23 -1.95 16 18 C -0.13 -1.63 8.08 31.22 0.25 -1.38 16 19 C -0.10 -1.15 7.85 30.97 0.24 -0.91 16 20 C 0.08 2.75 11.50 85.65 0.99 3.74 16 21 N -0.33 -14.17 12.50 -56.28 -0.70 -14.87 16 22 N -0.34 -15.14 3.56 -336.69 -1.20 -16.34 16 23 C 0.23 10.95 4.85 85.64 0.42 11.36 16 24 C -0.55 -31.61 9.94 25.60 0.25 -31.36 16 25 H 0.02 1.67 8.06 -2.91 -0.02 1.64 16 26 C 0.02 1.30 5.47 84.65 0.46 1.76 16 27 N -0.94 -56.79 13.96 21.45 0.30 -56.49 16 28 Si 0.95 40.53 27.47 68.60 1.88 42.42 16 29 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 30 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 31 H -0.23 -8.81 6.54 99.48 0.65 -8.16 16 32 H 0.10 3.04 8.14 -2.39 -0.02 3.02 16 33 H 0.07 2.70 7.71 -2.39 -0.02 2.68 16 34 H 0.10 3.46 6.50 -2.39 -0.02 3.44 16 35 H 0.41 9.29 6.29 -92.71 -0.58 8.70 16 36 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 37 H 0.06 1.28 6.47 -2.39 -0.02 1.26 16 38 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.07 1.24 8.10 -2.39 -0.02 1.22 16 41 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 44 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.09 0.73 8.14 -2.39 -0.02 0.72 16 46 H 0.22 5.33 7.50 -2.91 -0.02 5.31 16 47 H 0.07 3.07 6.70 -2.39 -0.02 3.06 16 48 H 0.06 2.53 7.57 -2.39 -0.02 2.51 16 49 H 0.27 15.35 8.31 -92.70 -0.77 14.58 16 Total: -1.00 -72.29 389.67 2.90 -69.39 By element: Atomic # 1 Polarization: 31.09 SS G_CDS: 0.33 Total: 31.42 kcal Atomic # 6 Polarization: -12.59 SS G_CDS: 5.30 Total: -7.29 kcal Atomic # 7 Polarization: -103.00 SS G_CDS: -3.12 Total: -106.12 kcal Atomic # 8 Polarization: -28.32 SS G_CDS: -1.50 Total: -29.83 kcal Atomic # 14 Polarization: 40.53 SS G_CDS: 1.88 Total: 42.42 kcal Total: -72.29 2.90 -69.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889692996.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.138 kcal (2) G-P(sol) polarization free energy of solvation -72.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds