Wall clock time and date at job start Wed Apr 1 2020 06:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38048 * 126.29374 * 2 1 4 4 C 1.47435 * 126.41048 * 0.02562 * 3 2 1 5 5 O 1.21595 * 120.00181 * 0.15193 * 4 3 2 6 6 N 1.34776 * 119.99723 * 180.15284 * 4 3 2 7 7 C 1.46499 * 119.99927 * 179.97438 * 6 4 3 8 8 H 1.08997 * 113.50612 * 29.61154 * 7 6 4 9 9 C 1.50989 * 114.52951 * 255.49779 * 7 6 4 10 10 H 1.09004 * 115.07928 * 321.73667 * 9 7 6 11 11 C 1.52812 * 125.69225 * 115.31777 * 9 7 6 12 12 C 1.56110 * 100.07831 * 126.75534 * 11 9 7 13 13 O 1.45480 * 105.74716 * 336.76652 * 12 11 9 14 14 C 1.38682 * 107.80634 * 348.92088 * 13 12 11 15 15 H 1.09005 * 107.52917 * 284.64683 * 14 13 12 16 16 C 1.47451 * 139.86106 * 130.05400 * 14 13 12 17 17 C 1.52734 * 125.43781 * 342.68628 * 16 14 13 18 18 C 1.53993 * 86.70385 * 108.93669 * 17 16 14 19 19 C 1.52706 * 125.48352 * 100.17137 * 16 14 13 20 20 C 1.41282 * 107.17263 * 180.12745 * 3 2 1 21 21 N 1.30449 * 108.02396 * 359.62996 * 20 3 2 22 22 N 1.34254 * 126.28895 * 179.71792 * 2 1 3 23 23 C 1.46500 * 125.75824 * 0.02562 * 22 2 1 24 24 C 1.50690 * 109.47440 * 270.02588 * 23 22 2 25 25 H 1.08003 * 120.00032 * 359.97438 * 24 23 22 26 26 C 1.37879 * 120.00066 * 179.97438 * 24 23 22 27 27 N 1.31509 * 120.00071 * 359.97438 * 26 24 23 28 28 Si 1.86809 * 119.99990 * 180.02562 * 26 24 23 29 29 H 1.48496 * 109.47040 * 59.99699 * 28 26 24 30 30 H 1.48496 * 109.46859 * 179.97438 * 28 26 24 31 31 H 1.48502 * 109.46832 * 299.99856 * 28 26 24 32 32 H 1.08996 * 109.47445 * 270.28142 * 1 2 3 33 33 H 1.08998 * 109.46802 * 30.28050 * 1 2 3 34 34 H 1.09001 * 109.46695 * 150.27569 * 1 2 3 35 35 H 0.97001 * 119.99809 * 0.02562 * 6 4 3 36 36 H 1.08999 * 111.29076 * 244.46581 * 11 9 7 37 37 H 1.08998 * 111.28365 * 9.00172 * 11 9 7 38 38 H 1.09008 * 110.18730 * 95.83078 * 12 11 9 39 39 H 1.08997 * 110.19469 * 217.61403 * 12 11 9 40 40 H 1.09004 * 113.67411 * 223.38805 * 17 16 14 41 41 H 1.08996 * 113.67908 * 354.48477 * 17 16 14 42 42 H 1.08995 * 113.56927 * 269.95901 * 18 17 16 43 43 H 1.08999 * 113.63652 * 139.20562 * 18 17 16 44 44 H 1.09008 * 113.67045 * 5.54943 * 19 16 14 45 45 H 1.09005 * 113.67683 * 136.54022 * 19 16 14 46 46 H 1.08002 * 125.99189 * 179.89887 * 20 3 2 47 47 H 1.08998 * 109.46889 * 30.02870 * 23 22 2 48 48 H 1.09004 * 109.47153 * 150.02099 * 23 22 2 49 49 H 0.96996 * 119.99977 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3242 1.1127 0.0000 4 6 1.8859 2.5203 0.0005 5 8 0.6997 2.7878 0.0038 6 7 2.8000 3.5107 -0.0027 7 6 2.3645 4.9095 -0.0027 8 1 1.4068 5.0667 0.4935 9 6 2.5031 5.6092 -1.3335 10 1 3.3969 5.3497 -1.9010 11 6 1.3516 6.1440 -2.1838 12 6 1.8244 7.6177 -2.3881 13 8 2.7289 7.8988 -1.2840 14 6 2.6166 6.8624 -0.3693 15 1 1.6778 6.9988 0.1677 16 6 3.4714 5.9306 0.3891 17 6 4.9323 5.6142 0.0754 18 6 5.2849 6.4097 1.3459 19 6 3.8684 6.0856 1.8555 20 6 3.6591 0.6499 -0.0030 21 7 3.6341 -0.6544 0.0033 22 7 2.3016 -1.0821 0.0053 23 6 1.8501 -2.4758 0.0117 24 6 1.6941 -2.9469 1.4345 25 1 1.9102 -2.2755 2.2524 26 6 1.2756 -4.2351 1.6922 27 7 1.0120 -5.0525 0.6963 28 14 1.0815 -4.8188 3.4561 29 1 0.0803 -3.9705 4.1510 30 1 0.6227 -6.2311 3.4624 31 1 2.3869 -4.7187 4.1570 32 1 -0.3634 0.0050 1.0276 33 1 -0.3633 0.8875 -0.5182 34 1 -0.3633 -0.8925 -0.5096 35 1 3.7462 3.2973 -0.0057 36 1 1.2827 5.6151 -3.1344 37 1 0.4069 6.1022 -1.6417 38 1 2.3488 7.7161 -3.3387 39 1 0.9704 8.2943 -2.3582 40 1 5.1745 4.5535 0.1418 41 1 5.2925 6.0757 -0.8440 42 1 5.4502 7.4715 1.1635 43 1 6.0768 5.9547 1.9408 44 1 3.3806 6.9229 2.3548 45 1 3.8081 5.1585 2.4256 46 1 4.5450 1.2676 -0.0053 47 1 0.8919 -2.5495 -0.5026 48 1 2.5851 -3.0982 -0.4987 49 1 0.7172 -5.9586 0.8777 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889692999.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:20:32 Heat of formation + Delta-G solvation = 90.675226 kcal Electronic energy + Delta-G solvation = -30575.376932 eV Core-core repulsion = 26507.773604 eV Total energy + Delta-G solvation = -4067.603329 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 24.94 seconds Orbital eigenvalues (eV) -42.57437 -40.76254 -38.71551 -38.15499 -34.98629 -33.94727 -32.95346 -32.00801 -31.13209 -30.87369 -27.54055 -26.69760 -26.34199 -25.11443 -24.11861 -23.24118 -22.38513 -21.86058 -20.76385 -19.84560 -19.07293 -18.70204 -17.38664 -17.05051 -16.76492 -16.21631 -15.79180 -15.57605 -15.12514 -14.82994 -14.70658 -14.65214 -14.47349 -14.02487 -13.84191 -13.45512 -13.09691 -12.77803 -12.62706 -12.54599 -12.44392 -12.24759 -12.11477 -11.87130 -11.78157 -11.74115 -11.49429 -11.47501 -11.28043 -11.15322 -10.88515 -10.78869 -10.64684 -10.38697 -10.21352 -9.97338 -9.91486 -9.55333 -9.26081 -8.91326 -8.72202 -8.61394 -7.93766 -6.35030 -4.43044 2.15902 2.55563 2.76686 3.16347 3.18864 3.22979 3.27968 3.54441 3.72116 3.82645 4.03858 4.22893 4.24231 4.34864 4.44525 4.50483 4.74259 4.84726 4.95949 4.98543 5.06831 5.13043 5.13551 5.17960 5.22386 5.35535 5.40923 5.46390 5.50204 5.53850 5.60786 5.64956 5.71276 5.72244 5.78195 5.85356 5.91289 6.06005 6.10645 6.11095 6.39798 6.52787 6.58262 6.77292 6.79782 6.88955 7.13607 7.54119 7.70584 7.75511 7.77343 8.35331 8.57909 8.62431 9.23891 10.73177 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.019455 B = 0.002372 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.890037 B =11803.949586 C =12384.352267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.166 3.834 3 C -0.334 4.334 4 C 0.607 3.393 5 O -0.554 6.554 6 N -0.720 5.720 7 C 0.158 3.842 8 H 0.124 0.876 9 C -0.185 4.185 10 H 0.114 0.886 11 C -0.142 4.142 12 C 0.056 3.944 13 O -0.362 6.362 14 C 0.063 3.937 15 H 0.075 0.925 16 C -0.072 4.072 17 C -0.116 4.116 18 C -0.137 4.137 19 C -0.129 4.129 20 C 0.057 3.943 21 N -0.295 5.295 22 N -0.314 5.314 23 C 0.251 3.749 24 C -0.541 4.541 25 H 0.065 0.935 26 C 0.068 3.932 27 N -0.890 5.890 28 Si 0.908 3.092 29 H -0.273 1.273 30 H -0.283 1.283 31 H -0.274 1.274 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.072 0.928 35 H 0.397 0.603 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.089 0.911 41 H 0.076 0.924 42 H 0.081 0.919 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.093 0.907 46 H 0.174 0.826 47 H 0.057 0.943 48 H 0.057 0.943 49 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.118 23.401 -3.652 24.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.029 3.971 3 C -0.349 4.349 4 C 0.398 3.602 5 O -0.434 6.434 6 N -0.371 5.371 7 C 0.052 3.948 8 H 0.142 0.858 9 C -0.205 4.205 10 H 0.132 0.868 11 C -0.179 4.179 12 C -0.019 4.019 13 O -0.280 6.280 14 C 0.003 3.997 15 H 0.093 0.907 16 C -0.073 4.073 17 C -0.153 4.153 18 C -0.174 4.174 19 C -0.166 4.166 20 C -0.130 4.130 21 N -0.115 5.115 22 N -0.090 5.090 23 C 0.134 3.866 24 C -0.579 4.579 25 H 0.083 0.917 26 C -0.136 4.136 27 N -0.527 5.527 28 Si 0.735 3.265 29 H -0.198 1.198 30 H -0.209 1.209 31 H -0.199 1.199 32 H 0.102 0.898 33 H 0.111 0.889 34 H 0.091 0.909 35 H 0.233 0.767 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.108 0.892 41 H 0.095 0.905 42 H 0.100 0.900 43 H 0.090 0.910 44 H 0.091 0.909 45 H 0.111 0.889 46 H 0.191 0.809 47 H 0.074 0.926 48 H 0.075 0.925 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.995 22.289 -3.691 22.943 hybrid contribution -0.125 0.027 0.768 0.779 sum 3.870 22.316 -2.923 22.837 Atomic orbital electron populations 1.20567 0.86816 1.03744 1.03932 1.21480 0.94955 0.86533 0.94158 1.19666 0.93112 0.92485 1.29635 1.17319 0.85012 0.83848 0.74054 1.90682 1.16701 1.84436 1.51533 1.45592 1.09711 1.04652 1.77160 1.22206 0.98113 0.79642 0.94820 0.85830 1.24997 1.00320 0.99745 0.95417 0.86788 1.22624 0.98634 0.95098 1.01565 1.24190 0.92659 0.95559 0.89525 1.87672 1.64885 1.43263 1.32212 1.22222 0.98022 0.85013 0.94425 0.90697 1.22386 0.94906 0.93454 0.96559 1.22638 0.92548 1.00918 0.99215 1.22833 0.97109 1.00572 0.96895 1.22811 0.96554 1.02633 0.94582 1.23694 0.96287 0.92652 1.00378 1.77145 0.98636 1.12249 1.23451 1.49375 1.02470 1.08327 1.48869 1.19848 0.96400 0.70896 0.99429 1.21203 1.47578 0.98183 0.90957 0.91717 1.24920 0.94417 0.95953 0.98322 1.69898 1.44364 1.07129 1.31313 0.86380 0.78891 0.77755 0.83503 1.19835 1.20852 1.19890 0.89829 0.88853 0.90889 0.76734 0.90078 0.90025 0.90197 0.91032 0.89250 0.90526 0.90019 0.91026 0.90919 0.88878 0.80914 0.92563 0.92529 0.92034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.65 9.56 36.01 0.34 -1.31 16 2 C 0.17 3.33 7.01 -81.60 -0.57 2.76 16 3 C -0.33 -5.93 6.13 -105.06 -0.64 -6.58 16 4 C 0.61 9.66 7.81 -12.52 -0.10 9.56 16 5 O -0.55 -10.14 14.54 5.28 0.08 -10.06 16 6 N -0.72 -8.40 5.39 -66.37 -0.36 -8.75 16 7 C 0.16 1.64 3.79 -79.25 -0.30 1.34 16 8 H 0.12 1.45 7.11 -51.93 -0.37 1.08 16 9 C -0.18 -1.78 4.28 -100.54 -0.43 -2.21 16 10 H 0.11 1.09 7.27 -51.93 -0.38 0.71 16 11 C -0.14 -1.25 6.83 -25.16 -0.17 -1.42 16 12 C 0.06 0.45 7.89 38.82 0.31 0.76 16 13 O -0.36 -3.82 11.28 -28.85 -0.33 -4.15 16 14 C 0.06 0.60 4.98 -38.05 -0.19 0.41 16 15 H 0.08 0.72 7.29 -51.93 -0.38 0.34 16 16 C -0.07 -0.62 1.12 -167.97 -0.19 -0.80 16 17 C -0.12 -0.86 6.67 -26.35 -0.18 -1.03 16 18 C -0.14 -0.97 8.08 -25.72 -0.21 -1.18 16 19 C -0.13 -1.01 7.90 -26.37 -0.21 -1.22 16 20 C 0.06 0.96 11.50 -16.98 -0.20 0.77 16 21 N -0.29 -6.24 12.50 30.86 0.39 -5.85 16 22 N -0.31 -7.00 3.56 -57.78 -0.21 -7.21 16 23 C 0.25 6.21 5.97 -5.20 -0.03 6.18 16 24 C -0.54 -14.48 9.39 -34.44 -0.32 -14.80 16 25 H 0.06 1.78 7.81 -52.48 -0.41 1.37 16 26 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 27 N -0.89 -24.47 13.29 55.43 0.74 -23.74 16 28 Si 0.91 20.69 29.54 -169.99 -5.02 15.67 16 29 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 30 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 31 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 32 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 33 H 0.09 1.59 6.52 -51.93 -0.34 1.25 16 34 H 0.07 1.27 7.05 -51.93 -0.37 0.91 16 35 H 0.40 3.81 5.87 -40.82 -0.24 3.57 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.08 0.55 8.14 -51.92 -0.42 0.13 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.09 0.58 6.58 -51.93 -0.34 0.24 16 41 H 0.08 0.58 8.03 -51.93 -0.42 0.16 16 42 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 45 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.17 2.07 7.50 -52.49 -0.39 1.68 16 47 H 0.06 1.38 7.02 -51.93 -0.36 1.02 16 48 H 0.06 1.49 8.14 -51.93 -0.42 1.06 16 49 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 393.57 15.07 5.93 5.93 Total: -1.00 -30.83 393.57 -9.32 -40.15 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -7.36 Total: 5.07 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: -3.18 Total: -7.06 kcal Atomic # 7 Polarization: -46.11 SS G_CDS: 0.56 Total: -45.55 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: -0.25 Total: -14.21 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -30.83 -9.32 -40.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889692999.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.827 kcal (2) G-P(sol) polarization free energy of solvation -30.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 24.94 seconds