Wall clock time and date at job start Wed Apr 1 2020 06:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38048 * 126.29374 * 2 1 4 4 C 1.47435 * 126.41048 * 0.02562 * 3 2 1 5 5 O 1.21595 * 120.00181 * 0.15193 * 4 3 2 6 6 N 1.34776 * 119.99723 * 180.15284 * 4 3 2 7 7 C 1.46499 * 119.99927 * 179.97438 * 6 4 3 8 8 H 1.08997 * 113.50612 * 29.61154 * 7 6 4 9 9 C 1.50989 * 114.52951 * 255.49779 * 7 6 4 10 10 H 1.09004 * 115.07928 * 321.73667 * 9 7 6 11 11 C 1.52812 * 125.69225 * 115.31777 * 9 7 6 12 12 C 1.56110 * 100.07831 * 126.75534 * 11 9 7 13 13 O 1.45480 * 105.74716 * 336.76652 * 12 11 9 14 14 C 1.38682 * 107.80634 * 348.92088 * 13 12 11 15 15 H 1.09005 * 107.52917 * 284.64683 * 14 13 12 16 16 C 1.47451 * 139.86106 * 130.05400 * 14 13 12 17 17 C 1.52734 * 125.43781 * 342.68628 * 16 14 13 18 18 C 1.53993 * 86.70385 * 108.93669 * 17 16 14 19 19 C 1.52706 * 125.48352 * 100.17137 * 16 14 13 20 20 C 1.41282 * 107.17263 * 180.12745 * 3 2 1 21 21 N 1.30449 * 108.02396 * 359.62996 * 20 3 2 22 22 N 1.34254 * 126.28895 * 179.71792 * 2 1 3 23 23 C 1.46500 * 125.75824 * 0.02562 * 22 2 1 24 24 C 1.50690 * 109.47440 * 270.02588 * 23 22 2 25 25 H 1.08003 * 120.00032 * 359.97438 * 24 23 22 26 26 C 1.37879 * 120.00066 * 179.97438 * 24 23 22 27 27 N 1.31509 * 120.00071 * 359.97438 * 26 24 23 28 28 Si 1.86809 * 119.99990 * 180.02562 * 26 24 23 29 29 H 1.48496 * 109.47040 * 59.99699 * 28 26 24 30 30 H 1.48496 * 109.46859 * 179.97438 * 28 26 24 31 31 H 1.48502 * 109.46832 * 299.99856 * 28 26 24 32 32 H 1.08996 * 109.47445 * 270.28142 * 1 2 3 33 33 H 1.08998 * 109.46802 * 30.28050 * 1 2 3 34 34 H 1.09001 * 109.46695 * 150.27569 * 1 2 3 35 35 H 0.97001 * 119.99809 * 0.02562 * 6 4 3 36 36 H 1.08999 * 111.29076 * 244.46581 * 11 9 7 37 37 H 1.08998 * 111.28365 * 9.00172 * 11 9 7 38 38 H 1.09008 * 110.18730 * 95.83078 * 12 11 9 39 39 H 1.08997 * 110.19469 * 217.61403 * 12 11 9 40 40 H 1.09004 * 113.67411 * 223.38805 * 17 16 14 41 41 H 1.08996 * 113.67908 * 354.48477 * 17 16 14 42 42 H 1.08995 * 113.56927 * 269.95901 * 18 17 16 43 43 H 1.08999 * 113.63652 * 139.20562 * 18 17 16 44 44 H 1.09008 * 113.67045 * 5.54943 * 19 16 14 45 45 H 1.09005 * 113.67683 * 136.54022 * 19 16 14 46 46 H 1.08002 * 125.99189 * 179.89887 * 20 3 2 47 47 H 1.08998 * 109.46889 * 30.02870 * 23 22 2 48 48 H 1.09004 * 109.47153 * 150.02099 * 23 22 2 49 49 H 0.96996 * 119.99977 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3242 1.1127 0.0000 4 6 1.8859 2.5203 0.0005 5 8 0.6997 2.7878 0.0038 6 7 2.8000 3.5107 -0.0027 7 6 2.3645 4.9095 -0.0027 8 1 1.4068 5.0667 0.4935 9 6 2.5031 5.6092 -1.3335 10 1 3.3969 5.3497 -1.9010 11 6 1.3516 6.1440 -2.1838 12 6 1.8244 7.6177 -2.3881 13 8 2.7289 7.8988 -1.2840 14 6 2.6166 6.8624 -0.3693 15 1 1.6778 6.9988 0.1677 16 6 3.4714 5.9306 0.3891 17 6 4.9323 5.6142 0.0754 18 6 5.2849 6.4097 1.3459 19 6 3.8684 6.0856 1.8555 20 6 3.6591 0.6499 -0.0030 21 7 3.6341 -0.6544 0.0033 22 7 2.3016 -1.0821 0.0053 23 6 1.8501 -2.4758 0.0117 24 6 1.6941 -2.9469 1.4345 25 1 1.9102 -2.2755 2.2524 26 6 1.2756 -4.2351 1.6922 27 7 1.0120 -5.0525 0.6963 28 14 1.0815 -4.8188 3.4561 29 1 0.0803 -3.9705 4.1510 30 1 0.6227 -6.2311 3.4624 31 1 2.3869 -4.7187 4.1570 32 1 -0.3634 0.0050 1.0276 33 1 -0.3633 0.8875 -0.5182 34 1 -0.3633 -0.8925 -0.5096 35 1 3.7462 3.2973 -0.0057 36 1 1.2827 5.6151 -3.1344 37 1 0.4069 6.1022 -1.6417 38 1 2.3488 7.7161 -3.3387 39 1 0.9704 8.2943 -2.3582 40 1 5.1745 4.5535 0.1418 41 1 5.2925 6.0757 -0.8440 42 1 5.4502 7.4715 1.1635 43 1 6.0768 5.9547 1.9408 44 1 3.3806 6.9229 2.3548 45 1 3.8081 5.1585 2.4256 46 1 4.5450 1.2676 -0.0053 47 1 0.8919 -2.5495 -0.5026 48 1 2.5851 -3.0982 -0.4987 49 1 0.7172 -5.9586 0.8777 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889692999.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:20:17 Heat of formation + Delta-G solvation = 72.035794 kcal Electronic energy + Delta-G solvation = -30576.185199 eV Core-core repulsion = 26507.773604 eV Total energy + Delta-G solvation = -4068.411595 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 14.52 seconds Orbital eigenvalues (eV) -43.33040 -42.25790 -39.86581 -38.95943 -35.89308 -35.77681 -34.19006 -33.52655 -32.67307 -31.62279 -29.25096 -28.24683 -26.94825 -25.98719 -25.40078 -24.63856 -23.23450 -22.89105 -21.66345 -21.13375 -20.52514 -19.38300 -18.86386 -18.55183 -18.02064 -16.94159 -16.90438 -16.57620 -16.38955 -16.11352 -16.05280 -15.77737 -15.48178 -15.22356 -15.06965 -14.63029 -14.26626 -14.16642 -14.06158 -13.68283 -13.58394 -13.37279 -13.25646 -13.10025 -12.97623 -12.95351 -12.69101 -12.54228 -12.44249 -12.30086 -12.18400 -11.93161 -11.87859 -11.72211 -11.49835 -11.26828 -10.83357 -10.75968 -10.60904 -10.26477 -10.08104 -9.96166 -9.41966 -8.37936 -6.54400 0.68925 1.33273 1.38719 1.39154 1.47568 1.63404 1.85012 2.31985 2.41667 2.53688 2.94337 3.01733 3.31666 3.46617 3.71003 3.72091 3.74853 3.77611 3.91893 4.07513 4.11630 4.19998 4.25346 4.27220 4.40021 4.46497 4.49993 4.55231 4.59978 4.65985 4.79346 4.81490 4.85317 4.86152 4.89834 4.92206 5.03195 5.07305 5.11717 5.13777 5.16875 5.20123 5.33171 5.48717 5.52209 5.56906 5.69295 5.74823 6.04678 6.07201 6.54462 6.63631 6.85718 7.16700 7.37566 8.69773 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.019455 B = 0.002372 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.890037 B =11803.949586 C =12384.352267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.145 3.855 3 C -0.330 4.330 4 C 0.609 3.391 5 O -0.581 6.581 6 N -0.698 5.698 7 C 0.150 3.850 8 H 0.109 0.891 9 C -0.185 4.185 10 H 0.120 0.880 11 C -0.143 4.143 12 C 0.057 3.943 13 O -0.379 6.379 14 C 0.062 3.938 15 H 0.070 0.930 16 C -0.063 4.063 17 C -0.114 4.114 18 C -0.131 4.131 19 C -0.131 4.131 20 C 0.079 3.921 21 N -0.336 5.336 22 N -0.338 5.338 23 C 0.268 3.732 24 C -0.556 4.556 25 H 0.052 0.948 26 C 0.024 3.976 27 N -0.917 5.917 28 Si 0.970 3.030 29 H -0.267 1.267 30 H -0.273 1.273 31 H -0.273 1.273 32 H 0.082 0.918 33 H 0.102 0.898 34 H 0.069 0.931 35 H 0.410 0.590 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.094 0.906 39 H 0.083 0.917 40 H 0.102 0.898 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.072 0.928 45 H 0.093 0.907 46 H 0.226 0.774 47 H 0.050 0.950 48 H 0.031 0.969 49 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.306 25.098 -3.119 25.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.009 3.991 3 C -0.345 4.345 4 C 0.398 3.602 5 O -0.462 6.462 6 N -0.350 5.350 7 C 0.045 3.955 8 H 0.127 0.873 9 C -0.205 4.205 10 H 0.138 0.862 11 C -0.181 4.181 12 C -0.018 4.018 13 O -0.298 6.298 14 C 0.003 3.997 15 H 0.087 0.913 16 C -0.064 4.064 17 C -0.151 4.151 18 C -0.169 4.169 19 C -0.168 4.168 20 C -0.107 4.107 21 N -0.155 5.155 22 N -0.115 5.115 23 C 0.149 3.851 24 C -0.594 4.594 25 H 0.070 0.930 26 C -0.177 4.177 27 N -0.555 5.555 28 Si 0.794 3.206 29 H -0.192 1.192 30 H -0.198 1.198 31 H -0.198 1.198 32 H 0.100 0.900 33 H 0.120 0.880 34 H 0.088 0.912 35 H 0.248 0.752 36 H 0.103 0.897 37 H 0.092 0.908 38 H 0.112 0.888 39 H 0.102 0.898 40 H 0.121 0.879 41 H 0.096 0.904 42 H 0.098 0.902 43 H 0.101 0.899 44 H 0.091 0.909 45 H 0.111 0.889 46 H 0.242 0.758 47 H 0.068 0.932 48 H 0.049 0.951 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.211 24.027 -3.168 24.789 hybrid contribution -0.475 -0.339 0.545 0.799 sum 4.735 23.688 -2.623 24.299 Atomic orbital electron populations 1.20541 0.85996 1.03960 1.03877 1.21961 0.95884 0.86784 0.94445 1.19950 0.93250 0.93029 1.28316 1.17110 0.85096 0.83732 0.74216 1.90674 1.17953 1.84656 1.52918 1.45385 1.09751 1.04484 1.75359 1.22283 0.98490 0.78900 0.95860 0.87333 1.25014 1.00812 0.99382 0.95317 0.86228 1.22641 0.98126 0.95772 1.01524 1.24310 0.92968 0.95124 0.89416 1.87646 1.65516 1.43766 1.32869 1.22207 0.98273 0.84790 0.94430 0.91281 1.22371 0.94911 0.91886 0.97232 1.22712 0.91129 1.01815 0.99455 1.22804 0.96807 1.00587 0.96685 1.22847 0.97203 1.02723 0.94013 1.24488 0.97612 0.91599 0.97044 1.77100 0.98277 1.14465 1.25699 1.49099 1.03412 1.07736 1.51290 1.19350 0.95245 0.72402 0.98111 1.21365 1.47987 0.98505 0.91566 0.92962 1.25725 0.93820 0.95906 1.02280 1.69984 1.44750 1.07519 1.33220 0.85417 0.78850 0.77681 0.78659 1.19150 1.19794 1.19774 0.89972 0.87996 0.91171 0.75198 0.89686 0.90753 0.88810 0.89848 0.87926 0.90417 0.90169 0.89905 0.90915 0.88859 0.75775 0.93238 0.95089 0.91649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.12 9.56 71.24 0.68 -2.44 16 2 C 0.15 5.86 7.01 42.15 0.30 6.15 16 3 C -0.33 -11.34 6.13 -20.15 -0.12 -11.47 16 4 C 0.61 18.47 7.81 86.67 0.68 19.15 16 5 O -0.58 -20.83 14.54 -4.02 -0.06 -20.89 16 6 N -0.70 -14.67 5.39 -482.16 -2.60 -17.27 16 7 C 0.15 2.87 3.79 37.66 0.14 3.02 16 8 H 0.11 2.48 7.11 -2.39 -0.02 2.46 16 9 C -0.19 -3.24 4.28 -17.22 -0.07 -3.32 16 10 H 0.12 1.99 7.27 -2.39 -0.02 1.97 16 11 C -0.14 -2.34 6.83 31.61 0.22 -2.12 16 12 C 0.06 0.82 7.89 73.06 0.58 1.39 16 13 O -0.38 -7.38 11.28 -126.16 -1.42 -8.81 16 14 C 0.06 1.10 4.98 23.26 0.12 1.22 16 15 H 0.07 1.28 7.29 -2.38 -0.02 1.26 16 16 C -0.06 -0.95 1.12 -60.90 -0.07 -1.01 16 17 C -0.11 -1.34 6.67 30.84 0.21 -1.13 16 18 C -0.13 -1.51 8.08 31.25 0.25 -1.25 16 19 C -0.13 -1.77 7.90 30.83 0.24 -1.53 16 20 C 0.08 2.52 11.50 85.65 0.99 3.51 16 21 N -0.34 -14.10 12.50 -56.28 -0.70 -14.80 16 22 N -0.34 -15.41 3.56 -336.71 -1.20 -16.61 16 23 C 0.27 13.74 5.97 85.63 0.51 14.25 16 24 C -0.56 -30.47 9.39 25.60 0.24 -30.23 16 25 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 26 C 0.02 1.30 5.46 84.66 0.46 1.76 16 27 N -0.92 -51.14 13.29 21.45 0.28 -50.85 16 28 Si 0.97 42.37 29.54 68.60 2.03 44.40 16 29 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 30 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 31 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 32 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 33 H 0.10 3.49 6.52 -2.39 -0.02 3.47 16 34 H 0.07 2.54 7.05 -2.39 -0.02 2.52 16 35 H 0.41 6.41 5.87 -92.71 -0.54 5.87 16 36 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 39 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.10 0.93 6.58 -2.38 -0.02 0.92 16 41 H 0.08 0.94 8.03 -2.39 -0.02 0.92 16 42 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 45 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 46 H 0.23 4.40 7.50 -2.91 -0.02 4.38 16 47 H 0.05 2.55 7.02 -2.39 -0.02 2.53 16 48 H 0.03 1.71 8.14 -2.38 -0.02 1.69 16 49 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 Total: -1.00 -67.36 393.57 2.10 -65.26 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: 0.43 Total: 23.65 kcal Atomic # 6 Polarization: -9.41 SS G_CDS: 5.34 Total: -4.07 kcal Atomic # 7 Polarization: -95.32 SS G_CDS: -4.22 Total: -99.54 kcal Atomic # 8 Polarization: -28.22 SS G_CDS: -1.48 Total: -29.70 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.40 kcal Total: -67.36 2.10 -65.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889692999.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.298 kcal (2) G-P(sol) polarization free energy of solvation -67.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 14.53 seconds