Wall clock time and date at job start Wed Apr 1 2020 06:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38045 * 126.29131 * 2 1 4 4 C 1.47429 * 126.41404 * 0.02562 * 3 2 1 5 5 O 1.21602 * 119.99658 * 359.70767 * 4 3 2 6 6 N 1.34778 * 119.99964 * 179.71505 * 4 3 2 7 7 C 1.47713 * 134.43259 * 359.97438 * 6 4 3 8 8 C 1.53235 * 85.89426 * 155.85055 * 7 6 4 9 9 C 1.53433 * 114.99793 * 266.93757 * 8 7 6 10 10 C 1.54989 * 103.84860 * 231.12992 * 9 8 7 11 11 C 1.55056 * 102.12699 * 20.86346 * 10 9 8 12 12 O 1.42970 * 115.33543 * 139.95834 * 8 7 6 13 13 C 1.47721 * 134.42858 * 179.97438 * 6 4 3 14 14 H 1.08995 * 113.80455 * 89.90435 * 13 6 4 15 15 C 1.52997 * 113.80533 * 318.39516 * 13 6 4 16 16 C 1.52996 * 117.49795 * 158.55327 * 15 13 6 17 17 C 1.52996 * 117.50014 * 89.88856 * 15 13 6 18 18 C 1.41290 * 107.17112 * 179.75702 * 3 2 1 19 19 N 1.30448 * 108.02394 * 0.24126 * 18 3 2 20 20 N 1.34261 * 126.29353 * 180.17377 * 2 1 3 21 21 C 1.46495 * 125.75515 * 359.97438 * 20 2 1 22 22 C 1.50698 * 109.47459 * 270.31456 * 21 20 2 23 23 H 1.08004 * 119.99491 * 359.97438 * 22 21 20 24 24 C 1.37874 * 120.00512 * 179.97438 * 22 21 20 25 25 N 1.31513 * 119.99953 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 120.00118 * 180.02562 * 24 22 21 27 27 H 1.48494 * 109.47039 * 359.97438 * 26 24 22 28 28 H 1.48497 * 109.47378 * 119.99959 * 26 24 22 29 29 H 1.48505 * 109.46987 * 239.99665 * 26 24 22 30 30 H 1.09003 * 109.46729 * 90.00452 * 1 2 3 31 31 H 1.09002 * 109.47024 * 210.00312 * 1 2 3 32 32 H 1.08990 * 109.47473 * 330.00201 * 1 2 3 33 33 H 1.09003 * 113.80730 * 41.60983 * 7 6 4 34 34 H 1.08994 * 113.80523 * 270.09346 * 7 6 4 35 35 H 1.09004 * 110.54824 * 349.72300 * 9 8 7 36 36 H 1.09001 * 110.55221 * 112.53646 * 9 8 7 37 37 H 1.09000 * 110.87307 * 139.02140 * 10 9 8 38 38 H 1.09001 * 110.87106 * 262.49622 * 10 9 8 39 39 H 1.09000 * 110.58946 * 81.94291 * 11 10 9 40 40 H 1.08999 * 110.59047 * 204.72121 * 11 10 9 41 41 H 1.09000 * 115.54948 * 304.21922 * 15 13 6 42 42 H 1.08997 * 117.50126 * 359.97438 * 16 15 13 43 43 H 1.09000 * 117.49728 * 145.01964 * 16 15 13 44 44 H 1.08999 * 117.50386 * 214.97386 * 17 15 13 45 45 H 1.09006 * 117.49786 * 359.97438 * 17 15 13 46 46 H 1.08006 * 125.98900 * 180.27341 * 18 3 2 47 47 H 1.09001 * 109.47473 * 30.31389 * 21 20 2 48 48 H 1.09006 * 109.47386 * 150.30870 * 21 20 2 49 49 H 0.96995 * 120.00176 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1127 0.0000 4 6 1.8858 2.5203 0.0005 5 8 0.6995 2.7877 -0.0043 6 7 2.7999 3.5107 0.0063 7 6 4.2763 3.5552 0.0133 8 6 4.1276 4.9468 -0.6107 9 6 4.1616 4.9767 -2.1444 10 6 5.2222 6.0588 -2.4708 11 6 6.0374 6.1238 -1.1535 12 8 5.0388 5.9357 -0.1250 13 6 2.7260 4.9861 0.0080 14 1 2.6976 5.4239 1.0058 15 6 1.6541 5.5519 -0.9257 16 6 1.1498 6.9689 -0.6456 17 6 0.2538 5.7641 -0.3471 18 6 3.6590 0.6499 0.0057 19 7 3.6340 -0.6544 0.0037 20 7 2.3017 -1.0821 -0.0033 21 6 1.8502 -2.4758 -0.0070 22 6 1.6884 -2.9552 1.4125 23 1 1.9011 -2.2886 2.2352 24 6 1.2689 -4.2449 1.6611 25 7 1.0094 -5.0565 0.6593 26 14 1.0677 -4.8389 3.4206 27 1 1.4199 -3.7414 4.3568 28 1 -0.3413 -5.2497 3.6464 29 1 1.9653 -5.9980 3.6574 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3634 0.8899 0.5137 33 1 4.7417 2.8241 -0.6478 34 1 4.7114 3.5654 1.0126 35 1 4.4689 4.0083 -2.5392 36 1 3.1883 5.2623 -2.5433 37 1 5.8530 5.7457 -3.3028 38 1 4.7470 7.0161 -2.6849 39 1 6.7770 5.3239 -1.1205 40 1 6.5202 7.0955 -1.0490 41 1 1.7262 5.2401 -1.9676 42 1 1.5813 7.4979 0.2041 43 1 0.8897 7.5892 -1.5033 44 1 -0.5954 5.5925 -1.0085 45 1 0.0960 5.5003 0.6987 46 1 4.5449 1.2677 0.0114 47 1 0.8940 -2.5466 -0.5255 48 1 2.5873 -3.0952 -0.5180 49 1 0.7139 -5.9637 0.8341 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891216841.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:16:57 Heat of formation + Delta-G solvation = 42.714674 kcal Electronic energy + Delta-G solvation = -30992.804239 eV Core-core repulsion = 26923.121184 eV Total energy + Delta-G solvation = -4069.683054 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 4.75 seconds Orbital eigenvalues (eV) -42.52203 -41.91369 -39.51074 -38.14171 -36.99383 -35.82116 -33.90091 -33.00482 -32.75910 -30.91484 -29.11847 -28.21355 -27.83576 -26.64327 -25.28917 -23.29590 -23.05720 -22.97900 -22.13696 -21.34206 -20.42625 -19.51186 -18.89052 -18.43184 -17.32266 -17.23957 -16.95537 -16.63668 -16.58275 -16.30937 -16.07134 -15.49912 -15.21950 -15.01988 -14.84194 -14.63072 -14.29078 -14.22503 -14.09875 -13.73728 -13.65047 -13.48032 -13.31474 -13.10103 -12.96820 -12.74136 -12.62146 -12.49778 -12.37738 -12.34512 -12.26464 -11.97218 -11.85681 -11.75018 -11.40101 -11.29185 -11.17521 -10.78319 -10.58687 -10.43393 -10.28823 -9.81410 -9.41481 -8.40012 -6.56469 0.66335 1.28040 1.34608 1.36940 1.47300 1.54429 1.84748 2.30811 2.47441 2.75888 2.91986 3.12389 3.26072 3.39723 3.65536 3.71564 3.72107 3.85869 3.97054 4.05995 4.10015 4.14581 4.18367 4.21303 4.32954 4.36142 4.47808 4.57938 4.59419 4.63909 4.74778 4.77464 4.79528 4.83291 4.84925 4.92529 5.00318 5.01917 5.06860 5.08011 5.12005 5.16280 5.23922 5.28939 5.36956 5.47244 5.64401 5.72716 5.97719 6.02488 6.52870 6.69861 6.79526 7.14861 7.30384 8.68132 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017802 B = 0.002652 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.466100 B =10557.313199 C =11338.678269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.147 3.853 3 C -0.325 4.325 4 C 0.628 3.372 5 O -0.565 6.565 6 N -0.633 5.633 7 C 0.078 3.922 8 C 0.091 3.909 9 C -0.137 4.137 10 C -0.146 4.146 11 C 0.039 3.961 12 O -0.370 6.370 13 C 0.176 3.824 14 H 0.092 0.908 15 C -0.165 4.165 16 C -0.148 4.148 17 C -0.165 4.165 18 C 0.072 3.928 19 N -0.334 5.334 20 N -0.337 5.337 21 C 0.268 3.732 22 C -0.556 4.556 23 H 0.050 0.950 24 C 0.025 3.975 25 N -0.916 5.916 26 Si 0.971 3.029 27 H -0.274 1.274 28 H -0.268 1.268 29 H -0.272 1.272 30 H 0.091 0.909 31 H 0.070 0.930 32 H 0.098 0.902 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.083 0.917 39 H 0.073 0.927 40 H 0.109 0.891 41 H 0.111 0.889 42 H 0.102 0.898 43 H 0.113 0.887 44 H 0.089 0.911 45 H 0.076 0.924 46 H 0.217 0.783 47 H 0.051 0.949 48 H 0.033 0.967 49 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.502 25.572 -6.418 27.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.011 3.989 3 C -0.341 4.341 4 C 0.420 3.580 5 O -0.445 6.445 6 N -0.369 5.369 7 C -0.044 4.044 8 C 0.050 3.950 9 C -0.174 4.174 10 C -0.183 4.183 11 C -0.037 4.037 12 O -0.288 6.288 13 C 0.073 3.927 14 H 0.109 0.891 15 C -0.183 4.183 16 C -0.185 4.185 17 C -0.202 4.202 18 C -0.115 4.115 19 N -0.154 5.154 20 N -0.114 5.114 21 C 0.149 3.851 22 C -0.594 4.594 23 H 0.068 0.932 24 C -0.177 4.177 25 N -0.554 5.554 26 Si 0.795 3.205 27 H -0.199 1.199 28 H -0.193 1.193 29 H -0.197 1.197 30 H 0.110 0.890 31 H 0.088 0.912 32 H 0.116 0.884 33 H 0.121 0.879 34 H 0.119 0.881 35 H 0.102 0.898 36 H 0.108 0.892 37 H 0.116 0.884 38 H 0.101 0.899 39 H 0.091 0.909 40 H 0.127 0.873 41 H 0.129 0.871 42 H 0.120 0.880 43 H 0.131 0.869 44 H 0.108 0.892 45 H 0.095 0.905 46 H 0.233 0.767 47 H 0.069 0.931 48 H 0.051 0.949 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.366 24.213 -6.276 26.076 hybrid contribution -0.600 -0.510 0.809 1.129 sum 6.766 23.704 -5.467 25.250 Atomic orbital electron populations 1.20565 0.85754 1.04195 1.04060 1.21933 0.95941 0.86553 0.94485 1.19902 0.93227 0.92865 1.28073 1.16639 0.84047 0.82657 0.74623 1.90684 1.16804 1.84057 1.52986 1.49424 1.07485 1.05905 1.74119 1.24010 0.80317 0.97262 1.02832 1.23319 0.89033 0.87781 0.94865 1.22790 1.01905 1.01140 0.91577 1.23158 0.97154 0.99347 0.98668 1.23862 0.90876 1.03274 0.85700 1.88790 1.39654 1.58307 1.42091 1.22354 0.93050 0.78884 0.98363 0.89058 1.22336 0.95439 1.00998 0.99541 1.23041 1.01878 0.89502 1.04103 1.22690 0.93556 1.02723 1.01242 1.24624 0.97736 0.91574 0.97537 1.77088 0.98454 1.14207 1.25624 1.49122 1.03307 1.07768 1.51212 1.19374 0.95306 0.72252 0.98139 1.21417 1.47957 0.98514 0.91544 0.93185 1.25715 0.93795 0.95903 1.02242 1.69995 1.44809 1.07665 1.32891 0.85306 0.78518 0.78185 0.78487 1.19860 1.19266 1.19726 0.89007 0.91160 0.88377 0.87902 0.88136 0.89797 0.89248 0.88425 0.89875 0.90896 0.87308 0.87141 0.88009 0.86876 0.89242 0.90528 0.76661 0.93122 0.94932 0.91601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.30 9.34 71.23 0.67 -2.64 16 2 C 0.15 6.21 7.01 42.14 0.30 6.50 16 3 C -0.33 -12.25 6.12 -20.15 -0.12 -12.37 16 4 C 0.63 21.45 7.95 86.66 0.69 22.14 16 5 O -0.57 -21.57 14.21 -4.04 -0.06 -21.63 16 6 N -0.63 -16.47 3.47 -833.49 -2.89 -19.36 16 7 C 0.08 1.50 6.64 86.22 0.57 2.07 16 8 C 0.09 1.57 1.49 -10.44 -0.02 1.55 16 9 C -0.14 -1.90 6.27 31.42 0.20 -1.70 16 10 C -0.15 -1.33 7.16 31.98 0.23 -1.10 16 11 C 0.04 0.40 7.73 72.69 0.56 0.96 16 12 O -0.37 -6.27 11.29 -148.98 -1.68 -7.95 16 13 C 0.18 3.82 4.18 44.84 0.19 4.01 16 14 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 15 C -0.16 -3.37 4.43 -10.80 -0.05 -3.42 16 16 C -0.15 -2.37 10.25 30.62 0.31 -2.05 16 17 C -0.16 -3.68 9.37 30.62 0.29 -3.39 16 18 C 0.07 2.53 11.07 85.65 0.95 3.48 16 19 N -0.33 -14.76 12.50 -56.27 -0.70 -15.47 16 20 N -0.34 -15.89 3.56 -336.71 -1.20 -17.09 16 21 C 0.27 14.00 5.78 85.63 0.49 14.49 16 22 C -0.56 -31.03 9.39 25.60 0.24 -30.79 16 23 H 0.05 2.89 7.81 -2.91 -0.02 2.87 16 24 C 0.03 1.36 5.46 84.65 0.46 1.82 16 25 N -0.92 -51.42 13.29 21.45 0.28 -51.13 16 26 Si 0.97 43.07 29.54 68.60 2.03 45.10 16 27 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 28 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 29 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 30 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 31 H 0.07 2.78 7.71 -2.39 -0.02 2.77 16 32 H 0.10 3.62 6.50 -2.39 -0.02 3.61 16 33 H 0.10 1.69 5.97 -2.39 -0.01 1.67 16 34 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.08 1.15 7.74 -2.38 -0.02 1.13 16 36 H 0.09 1.33 5.02 -2.39 -0.01 1.32 16 37 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.11 2.27 5.91 -2.39 -0.01 2.25 16 42 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 46 H 0.22 5.48 5.14 -2.91 -0.01 5.47 16 47 H 0.05 2.65 7.64 -2.39 -0.02 2.63 16 48 H 0.03 1.82 8.14 -2.38 -0.02 1.80 16 49 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 Total: -1.00 -68.25 394.26 2.70 -65.55 By element: Atomic # 1 Polarization: 21.45 SS G_CDS: 0.97 Total: 22.42 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: 5.96 Total: -0.43 kcal Atomic # 7 Polarization: -98.54 SS G_CDS: -4.51 Total: -103.05 kcal Atomic # 8 Polarization: -27.84 SS G_CDS: -1.74 Total: -29.58 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -68.25 2.70 -65.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891216841.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.261 kcal (2) G-P(sol) polarization free energy of solvation -68.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.75 seconds