Wall clock time and date at job start Wed Apr 1 2020 06:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42900 * 114.00113 * 2 1 4 4 H 1.08994 * 110.53717 * 27.39690 * 3 2 1 5 5 C 1.55454 * 110.48164 * 150.00074 * 3 2 1 6 6 H 1.09001 * 113.25432 * 348.10681 * 5 3 2 7 7 C 1.56115 * 104.35399 * 111.71928 * 5 3 2 8 8 H 1.09000 * 116.43393 * 203.45299 * 7 5 3 9 9 C 1.56219 * 102.67525 * 331.75775 * 7 5 3 10 10 C 1.55801 * 110.48121 * 264.79548 * 3 2 1 11 11 H 1.08997 * 115.98622 * 46.83641 * 10 3 2 12 12 C 1.55982 * 104.37092 * 175.69813 * 10 3 2 13 13 C 1.54780 * 105.15075 * 70.57441 * 12 10 3 14 14 H 1.08997 * 113.56717 * 124.23420 * 13 12 10 15 15 C 1.54377 * 108.45645 * 252.59602 * 13 12 10 16 16 N 1.46796 * 106.10764 * 75.02324 * 15 13 12 17 17 C 1.34773 * 125.51082 * 192.84943 * 16 15 13 18 18 O 1.21600 * 119.99981 * 174.73478 * 17 16 15 19 19 C 1.47434 * 119.99688 * 354.73979 * 17 16 15 20 20 C 1.41284 * 126.41709 * 353.81202 * 19 17 16 21 21 N 1.30445 * 108.02410 * 179.97438 * 20 19 17 22 22 N 1.39934 * 108.89905 * 0.02562 * 21 20 19 23 23 C 1.46499 * 125.76121 * 180.02562 * 22 21 20 24 24 C 1.50704 * 109.46889 * 89.97066 * 23 22 21 25 25 H 1.07995 * 120.00041 * 0.02562 * 24 23 22 26 26 C 1.37881 * 119.99634 * 180.02562 * 24 23 22 27 27 N 1.31510 * 120.00123 * 0.02562 * 26 24 23 28 28 Si 1.86799 * 119.99569 * 180.02562 * 26 24 23 29 29 H 1.48501 * 109.46989 * 90.00879 * 28 26 24 30 30 H 1.48506 * 109.46797 * 210.00198 * 28 26 24 31 31 H 1.48497 * 109.47606 * 330.00412 * 28 26 24 32 32 C 1.34269 * 108.48965 * 359.74937 * 22 21 20 33 33 C 1.50703 * 126.29225 * 180.24732 * 32 22 21 34 34 H 1.08999 * 109.46794 * 59.99830 * 1 2 3 35 35 H 1.08994 * 109.47057 * 180.02562 * 1 2 3 36 36 H 1.08998 * 109.46571 * 300.00616 * 1 2 3 37 37 H 1.08998 * 111.99080 * 167.93751 * 9 7 5 38 38 H 1.09003 * 111.98632 * 294.34673 * 9 7 5 39 39 H 1.09002 * 110.30887 * 189.49685 * 12 10 3 40 40 H 1.09004 * 110.30485 * 311.65634 * 12 10 3 41 41 H 1.08996 * 110.12767 * 194.18409 * 15 13 12 42 42 H 1.08999 * 110.12372 * 315.86453 * 15 13 12 43 43 H 1.07997 * 125.98910 * 359.97438 * 20 19 17 44 44 H 1.08999 * 109.47487 * 209.97825 * 23 22 21 45 45 H 1.09001 * 109.46483 * 329.98062 * 23 22 21 46 46 H 0.97000 * 120.00070 * 179.97438 * 27 26 24 47 47 H 1.09000 * 109.46749 * 270.17980 * 33 32 22 48 48 H 1.08991 * 109.46904 * 30.17418 * 33 32 22 49 49 H 1.08999 * 109.46750 * 150.18016 * 33 32 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3380 2.0233 0.4697 5 6 3.3837 1.2894 0.7281 6 1 3.5675 0.3675 1.2799 7 6 4.4257 1.5476 -0.4053 8 1 5.4413 1.1978 -0.2197 9 6 3.7115 0.9652 -1.6667 10 6 2.3530 1.7496 -1.4535 11 1 1.5719 1.5930 -2.1974 12 6 2.8655 3.2148 -1.2999 13 6 4.2428 3.0908 -0.6048 14 1 5.0543 3.5638 -1.1578 15 6 4.0991 3.5742 0.8543 16 7 3.3973 2.5026 1.5711 17 6 2.8530 2.6084 2.7995 18 8 2.2102 1.6852 3.2613 19 6 3.0369 3.8434 3.5834 20 6 3.8522 4.9438 3.2359 21 7 3.7489 5.8370 4.1809 22 7 2.8760 5.3578 5.1641 23 6 2.4960 6.0646 6.3897 24 6 1.2709 6.9021 6.1272 25 1 0.8203 6.9070 5.1458 26 6 0.7254 7.6621 7.1402 27 7 1.2745 7.6564 8.3352 28 14 -0.7935 8.6996 6.8150 29 1 -2.0108 7.8976 7.0983 30 1 -0.7732 9.8960 7.6946 31 1 -0.8040 9.1302 5.3938 32 6 2.4407 4.1434 4.7918 33 6 1.4802 3.2676 5.5544 34 1 -0.3633 0.5139 -0.8900 35 1 -0.3633 -1.0276 0.0005 36 1 -0.3632 0.5139 0.8899 37 1 4.2152 1.2520 -2.5898 38 1 3.5785 -0.1146 -1.5983 39 1 2.9764 3.6814 -2.2788 40 1 2.1796 3.7924 -0.6802 41 1 5.0830 3.7376 1.2939 42 1 3.5149 4.4937 0.8889 43 1 4.4552 5.0302 2.3441 44 1 2.2795 5.3401 7.1748 45 1 3.3158 6.7094 6.7063 46 1 0.8909 8.1914 9.0477 47 1 2.0375 2.6242 6.2353 48 1 0.7937 3.8926 6.1253 49 1 0.9150 2.6526 4.8541 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897734565.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:17:24 Heat of formation + Delta-G solvation = 13.218802 kcal Electronic energy + Delta-G solvation = -31514.340540 eV Core-core repulsion = 27443.378448 eV Total energy + Delta-G solvation = -4070.962091 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.81877 -40.63999 -38.17049 -37.25596 -34.54736 -33.79569 -32.06509 -31.31332 -30.96043 -29.28679 -28.05847 -27.16745 -26.63403 -25.99095 -25.04257 -23.44449 -22.34111 -20.84046 -20.41550 -19.99710 -19.00245 -18.37094 -17.35648 -16.84866 -16.54334 -16.40667 -15.59639 -15.28378 -15.00097 -14.84882 -14.65805 -14.49234 -14.15456 -14.01318 -13.60570 -13.23690 -13.00993 -12.69444 -12.61858 -12.52407 -12.25686 -12.07203 -11.98610 -11.74687 -11.64700 -11.51414 -11.47494 -11.37037 -11.13192 -10.96273 -10.91604 -10.83757 -10.76852 -10.67325 -10.37657 -10.17625 -9.94471 -9.63541 -9.36848 -8.72580 -8.62307 -8.48707 -7.90304 -6.34823 -4.42912 2.17892 2.80199 2.96317 3.16576 3.23253 3.26889 3.41687 3.68935 3.86485 4.07040 4.10022 4.22611 4.23072 4.72931 4.76615 4.87535 4.97331 4.99137 5.02444 5.04929 5.13297 5.20143 5.23040 5.30050 5.30105 5.44874 5.46963 5.53004 5.56949 5.59967 5.66300 5.70742 5.76236 5.79614 5.82845 5.84582 5.90799 6.00071 6.08538 6.10150 6.37879 6.50873 6.60557 6.79432 6.89775 7.12535 7.17679 7.55099 7.72875 7.76214 7.78606 8.37672 8.57892 8.63354 9.24083 10.73332 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016488 B = 0.002830 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.843013 B = 9890.153134 C =10248.319985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.379 6.379 3 C 0.078 3.922 4 H 0.071 0.929 5 C 0.147 3.853 6 H 0.106 0.894 7 C -0.106 4.106 8 H 0.109 0.891 9 C -0.111 4.111 10 C -0.124 4.124 11 H 0.100 0.900 12 C -0.116 4.116 13 C -0.105 4.105 14 H 0.108 0.892 15 C 0.102 3.898 16 N -0.616 5.616 17 C 0.617 3.383 18 O -0.548 6.548 19 C -0.329 4.329 20 C 0.046 3.954 21 N -0.296 5.296 22 N -0.314 5.314 23 C 0.251 3.749 24 C -0.541 4.541 25 H 0.065 0.935 26 C 0.068 3.932 27 N -0.889 5.889 28 Si 0.908 3.092 29 H -0.276 1.276 30 H -0.282 1.282 31 H -0.272 1.272 32 C 0.165 3.835 33 C -0.095 4.095 34 H 0.036 0.964 35 H 0.083 0.917 36 H 0.043 0.957 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.080 0.920 43 H 0.183 0.817 44 H 0.056 0.944 45 H 0.057 0.943 46 H 0.269 0.731 47 H 0.077 0.923 48 H 0.082 0.918 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.404 -12.310 -19.788 23.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.297 6.297 3 C 0.019 3.981 4 H 0.089 0.911 5 C 0.043 3.957 6 H 0.124 0.876 7 C -0.125 4.125 8 H 0.127 0.873 9 C -0.148 4.148 10 C -0.142 4.142 11 H 0.118 0.882 12 C -0.154 4.154 13 C -0.123 4.123 14 H 0.126 0.874 15 C -0.021 4.021 16 N -0.352 5.352 17 C 0.410 3.590 18 O -0.427 6.427 19 C -0.344 4.344 20 C -0.140 4.140 21 N -0.116 5.116 22 N -0.090 5.090 23 C 0.134 3.866 24 C -0.579 4.579 25 H 0.083 0.917 26 C -0.136 4.136 27 N -0.526 5.526 28 Si 0.734 3.266 29 H -0.202 1.202 30 H -0.208 1.208 31 H -0.196 1.196 32 C 0.028 3.972 33 C -0.154 4.154 34 H 0.055 0.945 35 H 0.101 0.899 36 H 0.062 0.938 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.099 0.901 43 H 0.200 0.800 44 H 0.074 0.926 45 H 0.075 0.925 46 H 0.079 0.921 47 H 0.096 0.904 48 H 0.101 0.899 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.463 -11.575 -18.657 22.405 hybrid contribution -1.223 0.286 -0.321 1.296 sum 3.240 -11.289 -18.978 22.318 Atomic orbital electron populations 1.22745 0.81229 1.02426 0.99909 1.87843 1.19526 1.27529 1.94767 1.24108 0.94763 0.84745 0.94506 0.91148 1.22828 0.92967 0.89756 0.90100 0.87635 1.24052 0.98435 0.95351 0.94648 0.87290 1.23511 0.94602 1.00060 0.96666 1.24215 0.97859 0.95050 0.97100 0.88213 1.22690 0.95789 0.96103 1.00776 1.23240 0.98308 0.95697 0.95099 0.87435 1.22376 0.97203 0.91360 0.91153 1.48286 1.58116 1.12353 1.16402 1.17036 0.77299 0.86157 0.78514 1.90718 1.41144 1.40893 1.69940 1.19612 1.14580 0.99518 1.00711 1.24283 0.99400 0.91358 0.98962 1.77147 1.12353 1.22720 0.99412 1.49386 1.30177 1.11535 1.17949 1.19849 0.97369 0.92775 0.76630 1.21253 1.11096 1.27654 0.97917 0.91687 1.24926 0.97799 0.96309 0.94614 1.69912 1.40415 1.40405 1.01904 0.86326 0.82116 0.79600 0.78509 1.20202 1.20765 1.19640 1.21451 0.94631 0.87490 0.93643 1.20579 0.97049 0.97767 0.99959 0.94491 0.89858 0.93802 0.90692 0.90248 0.91104 0.91071 0.91118 0.90142 0.80001 0.92589 0.92484 0.92092 0.90414 0.89910 0.88976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.85 101.05 1.10 1.45 16 2 O -0.38 -4.80 10.32 -35.23 -0.36 -5.16 16 3 C 0.08 0.93 2.37 -23.93 -0.06 0.87 16 4 H 0.07 0.99 7.24 -51.93 -0.38 0.61 16 5 C 0.15 1.77 3.75 -64.28 -0.24 1.53 16 6 H 0.11 1.44 8.12 -51.93 -0.42 1.02 16 7 C -0.11 -0.89 4.92 -85.24 -0.42 -1.31 16 8 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 9 C -0.11 -0.86 6.55 -22.08 -0.14 -1.00 16 10 C -0.12 -1.10 4.95 -84.60 -0.42 -1.52 16 11 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 12 C -0.12 -0.95 5.78 -24.20 -0.14 -1.09 16 13 C -0.10 -0.81 4.30 -86.97 -0.37 -1.19 16 14 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 15 C 0.10 1.05 4.13 -3.16 -0.01 1.04 16 16 N -0.62 -8.35 2.60 -162.02 -0.42 -8.77 16 17 C 0.62 10.83 7.72 -12.52 -0.10 10.73 16 18 O -0.55 -10.95 15.26 5.28 0.08 -10.87 16 19 C -0.33 -6.21 6.06 -105.07 -0.64 -6.85 16 20 C 0.05 0.83 10.38 -16.98 -0.18 0.65 16 21 N -0.30 -6.43 12.50 30.86 0.39 -6.05 16 22 N -0.31 -7.16 3.56 -57.77 -0.21 -7.37 16 23 C 0.25 6.28 5.78 -5.19 -0.03 6.25 16 24 C -0.54 -14.56 9.39 -34.44 -0.32 -14.89 16 25 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 26 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 27 N -0.89 -24.58 13.29 55.43 0.74 -23.84 16 28 Si 0.91 20.75 29.54 -169.99 -5.02 15.73 16 29 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 30 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 31 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 32 C 0.17 3.43 7.00 -81.60 -0.57 2.86 16 33 C -0.10 -1.77 9.28 36.01 0.33 -1.43 16 34 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.04 0.50 8.11 -51.93 -0.42 0.08 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.08 0.67 8.06 -51.93 -0.42 0.25 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.70 7.21 -51.93 -0.37 0.32 16 41 H 0.07 0.66 7.10 -51.93 -0.37 0.29 16 42 H 0.08 0.87 6.42 -51.93 -0.33 0.53 16 43 H 0.18 2.45 4.67 -52.49 -0.25 2.21 16 44 H 0.06 1.39 7.64 -51.93 -0.40 1.00 16 45 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 46 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 47 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 48 H 0.08 1.58 7.71 -51.93 -0.40 1.18 16 49 H 0.09 1.68 6.65 -51.93 -0.35 1.33 16 LS Contribution 385.40 15.07 5.81 5.81 Total: -1.00 -31.39 385.40 -8.76 -40.16 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -7.45 Total: 2.57 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: -2.31 Total: -2.20 kcal Atomic # 7 Polarization: -46.53 SS G_CDS: 0.49 Total: -46.03 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: -0.28 Total: -16.03 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.39 -8.76 -40.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897734565.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.375 kcal (2) G-P(sol) polarization free energy of solvation -31.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds