Wall clock time and date at job start Wed Apr 1 2020 06:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42900 * 114.00113 * 2 1 4 4 H 1.08994 * 110.53717 * 27.39690 * 3 2 1 5 5 C 1.55454 * 110.48164 * 150.00074 * 3 2 1 6 6 H 1.09001 * 113.25432 * 348.10681 * 5 3 2 7 7 C 1.56115 * 104.35399 * 111.71928 * 5 3 2 8 8 H 1.09000 * 116.43393 * 203.45299 * 7 5 3 9 9 C 1.56219 * 102.67525 * 331.75775 * 7 5 3 10 10 C 1.55801 * 110.48121 * 264.79548 * 3 2 1 11 11 H 1.08997 * 115.98622 * 46.83641 * 10 3 2 12 12 C 1.55982 * 104.37092 * 175.69813 * 10 3 2 13 13 C 1.54780 * 105.15075 * 70.57441 * 12 10 3 14 14 H 1.08997 * 113.56717 * 124.23420 * 13 12 10 15 15 C 1.54377 * 108.45645 * 252.59602 * 13 12 10 16 16 N 1.46796 * 106.10764 * 75.02324 * 15 13 12 17 17 C 1.34773 * 125.51082 * 192.84943 * 16 15 13 18 18 O 1.21600 * 119.99981 * 174.73478 * 17 16 15 19 19 C 1.47434 * 119.99688 * 354.73979 * 17 16 15 20 20 C 1.41284 * 126.41709 * 353.81202 * 19 17 16 21 21 N 1.30445 * 108.02410 * 179.97438 * 20 19 17 22 22 N 1.39934 * 108.89905 * 0.02562 * 21 20 19 23 23 C 1.46499 * 125.76121 * 180.02562 * 22 21 20 24 24 C 1.50704 * 109.46889 * 89.97066 * 23 22 21 25 25 H 1.07995 * 120.00041 * 0.02562 * 24 23 22 26 26 C 1.37881 * 119.99634 * 180.02562 * 24 23 22 27 27 N 1.31510 * 120.00123 * 0.02562 * 26 24 23 28 28 Si 1.86799 * 119.99569 * 180.02562 * 26 24 23 29 29 H 1.48501 * 109.46989 * 90.00879 * 28 26 24 30 30 H 1.48506 * 109.46797 * 210.00198 * 28 26 24 31 31 H 1.48497 * 109.47606 * 330.00412 * 28 26 24 32 32 C 1.34269 * 108.48965 * 359.74937 * 22 21 20 33 33 C 1.50703 * 126.29225 * 180.24732 * 32 22 21 34 34 H 1.08999 * 109.46794 * 59.99830 * 1 2 3 35 35 H 1.08994 * 109.47057 * 180.02562 * 1 2 3 36 36 H 1.08998 * 109.46571 * 300.00616 * 1 2 3 37 37 H 1.08998 * 111.99080 * 167.93751 * 9 7 5 38 38 H 1.09003 * 111.98632 * 294.34673 * 9 7 5 39 39 H 1.09002 * 110.30887 * 189.49685 * 12 10 3 40 40 H 1.09004 * 110.30485 * 311.65634 * 12 10 3 41 41 H 1.08996 * 110.12767 * 194.18409 * 15 13 12 42 42 H 1.08999 * 110.12372 * 315.86453 * 15 13 12 43 43 H 1.07997 * 125.98910 * 359.97438 * 20 19 17 44 44 H 1.08999 * 109.47487 * 209.97825 * 23 22 21 45 45 H 1.09001 * 109.46483 * 329.98062 * 23 22 21 46 46 H 0.97000 * 120.00070 * 179.97438 * 27 26 24 47 47 H 1.09000 * 109.46749 * 270.17980 * 33 32 22 48 48 H 1.08991 * 109.46904 * 30.17418 * 33 32 22 49 49 H 1.08999 * 109.46750 * 150.18016 * 33 32 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3380 2.0233 0.4697 5 6 3.3837 1.2894 0.7281 6 1 3.5675 0.3675 1.2799 7 6 4.4257 1.5476 -0.4053 8 1 5.4413 1.1978 -0.2197 9 6 3.7115 0.9652 -1.6667 10 6 2.3530 1.7496 -1.4535 11 1 1.5719 1.5930 -2.1974 12 6 2.8655 3.2148 -1.2999 13 6 4.2428 3.0908 -0.6048 14 1 5.0543 3.5638 -1.1578 15 6 4.0991 3.5742 0.8543 16 7 3.3973 2.5026 1.5711 17 6 2.8530 2.6084 2.7995 18 8 2.2102 1.6852 3.2613 19 6 3.0369 3.8434 3.5834 20 6 3.8522 4.9438 3.2359 21 7 3.7489 5.8370 4.1809 22 7 2.8760 5.3578 5.1641 23 6 2.4960 6.0646 6.3897 24 6 1.2709 6.9021 6.1272 25 1 0.8203 6.9070 5.1458 26 6 0.7254 7.6621 7.1402 27 7 1.2745 7.6564 8.3352 28 14 -0.7935 8.6996 6.8150 29 1 -2.0108 7.8976 7.0983 30 1 -0.7732 9.8960 7.6946 31 1 -0.8040 9.1302 5.3938 32 6 2.4407 4.1434 4.7918 33 6 1.4802 3.2676 5.5544 34 1 -0.3633 0.5139 -0.8900 35 1 -0.3633 -1.0276 0.0005 36 1 -0.3632 0.5139 0.8899 37 1 4.2152 1.2520 -2.5898 38 1 3.5785 -0.1146 -1.5983 39 1 2.9764 3.6814 -2.2788 40 1 2.1796 3.7924 -0.6802 41 1 5.0830 3.7376 1.2939 42 1 3.5149 4.4937 0.8889 43 1 4.4552 5.0302 2.3441 44 1 2.2795 5.3401 7.1748 45 1 3.3158 6.7094 6.7063 46 1 0.8909 8.1914 9.0477 47 1 2.0375 2.6242 6.2353 48 1 0.7937 3.8926 6.1253 49 1 0.9150 2.6526 4.8541 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897734565.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:17:23 Heat of formation + Delta-G solvation = -5.771610 kcal Electronic energy + Delta-G solvation = -31515.164026 eV Core-core repulsion = 27443.378448 eV Total energy + Delta-G solvation = -4071.785577 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 6.51 seconds Orbital eigenvalues (eV) -42.78586 -42.10437 -39.49625 -38.19848 -35.94818 -35.40444 -33.81047 -32.80374 -31.93269 -30.22546 -29.30439 -28.61029 -27.93807 -27.04416 -25.95798 -25.29582 -23.57067 -22.05821 -21.29870 -21.16175 -19.90117 -19.76074 -18.88865 -18.38385 -17.71361 -17.48399 -16.87865 -16.53478 -16.41660 -16.19211 -16.12568 -15.54375 -15.30103 -15.18090 -14.72318 -14.42167 -14.35933 -14.08297 -14.01141 -13.85321 -13.68191 -13.46064 -13.21309 -13.11775 -12.98547 -12.76947 -12.72363 -12.38171 -12.34344 -12.22811 -12.16670 -11.88933 -11.77881 -11.64525 -11.58702 -11.50405 -11.42422 -10.82373 -10.78303 -10.51357 -10.29532 -9.75210 -9.38722 -8.40117 -6.56928 0.61533 1.27830 1.35763 1.36623 1.46877 1.60437 1.98648 2.30486 2.42698 2.86303 2.91958 3.27382 3.34894 3.51755 3.69025 3.72247 3.91841 4.02627 4.03343 4.11807 4.15998 4.26387 4.32582 4.36593 4.39609 4.41073 4.48102 4.53757 4.59147 4.65782 4.67218 4.75280 4.76008 4.82579 4.86691 4.93490 5.00419 5.04750 5.09434 5.13505 5.19473 5.22326 5.33811 5.38097 5.46340 5.48618 5.64092 5.71987 6.00298 6.21855 6.51909 6.52961 6.78443 7.14296 7.23035 8.67888 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016488 B = 0.002830 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.843013 B = 9890.153134 C =10248.319985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.397 6.397 3 C 0.075 3.925 4 H 0.038 0.962 5 C 0.134 3.866 6 H 0.082 0.918 7 C -0.095 4.095 8 H 0.129 0.871 9 C -0.100 4.100 10 C -0.119 4.119 11 H 0.108 0.892 12 C -0.116 4.116 13 C -0.088 4.088 14 H 0.146 0.854 15 C 0.087 3.913 16 N -0.609 5.609 17 C 0.612 3.388 18 O -0.583 6.583 19 C -0.328 4.328 20 C 0.070 3.930 21 N -0.333 5.333 22 N -0.336 5.336 23 C 0.267 3.733 24 C -0.557 4.557 25 H 0.051 0.949 26 C 0.024 3.976 27 N -0.916 5.916 28 Si 0.972 3.028 29 H -0.267 1.267 30 H -0.272 1.272 31 H -0.273 1.273 32 C 0.146 3.854 33 C -0.087 4.087 34 H 0.054 0.946 35 H 0.100 0.900 36 H 0.023 0.977 37 H 0.104 0.896 38 H 0.070 0.930 39 H 0.096 0.904 40 H 0.049 0.951 41 H 0.089 0.911 42 H 0.077 0.923 43 H 0.228 0.772 44 H 0.049 0.951 45 H 0.033 0.967 46 H 0.275 0.725 47 H 0.090 0.910 48 H 0.072 0.928 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.396 -12.213 -23.186 26.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.315 6.315 3 C 0.016 3.984 4 H 0.057 0.943 5 C 0.030 3.970 6 H 0.100 0.900 7 C -0.113 4.113 8 H 0.147 0.853 9 C -0.138 4.138 10 C -0.138 4.138 11 H 0.126 0.874 12 C -0.154 4.154 13 C -0.107 4.107 14 H 0.164 0.836 15 C -0.035 4.035 16 N -0.342 5.342 17 C 0.404 3.596 18 O -0.464 6.464 19 C -0.343 4.343 20 C -0.116 4.116 21 N -0.152 5.152 22 N -0.113 5.113 23 C 0.149 3.851 24 C -0.595 4.595 25 H 0.069 0.931 26 C -0.177 4.177 27 N -0.554 5.554 28 Si 0.796 3.204 29 H -0.192 1.192 30 H -0.197 1.197 31 H -0.198 1.198 32 C 0.009 3.991 33 C -0.145 4.145 34 H 0.072 0.928 35 H 0.118 0.882 36 H 0.041 0.959 37 H 0.122 0.878 38 H 0.089 0.911 39 H 0.115 0.885 40 H 0.068 0.932 41 H 0.107 0.893 42 H 0.095 0.905 43 H 0.244 0.756 44 H 0.067 0.933 45 H 0.051 0.949 46 H 0.084 0.916 47 H 0.109 0.891 48 H 0.090 0.910 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.478 -11.486 -22.096 25.499 hybrid contribution -1.516 0.146 0.664 1.661 sum 3.963 -11.339 -21.432 24.569 Atomic orbital electron populations 1.22842 0.80335 1.03535 0.99736 1.87806 1.20599 1.28141 1.94980 1.24136 0.93853 0.83784 0.96657 0.94341 1.23076 0.94881 0.88233 0.90770 0.90037 1.24120 0.98204 0.96084 0.92936 0.85329 1.23496 0.93529 0.99383 0.97350 1.24237 0.98886 0.95866 0.94796 0.87392 1.22714 0.95565 0.95267 1.01806 1.23327 0.99164 0.94943 0.93244 0.83584 1.22706 0.97446 0.90299 0.93009 1.48275 1.56694 1.14050 1.15164 1.16916 0.77640 0.85242 0.79778 1.90691 1.42809 1.41720 1.71211 1.19881 1.13991 1.00336 1.00136 1.24977 0.98133 0.89610 0.98915 1.77100 1.13369 1.24449 1.00303 1.49137 1.31795 1.12279 1.18097 1.19381 0.95876 0.92120 0.77740 1.21384 1.11998 1.28605 0.97508 0.93053 1.25737 1.00554 0.97175 0.94254 1.69994 1.41719 1.41035 1.02641 0.85341 0.78651 0.78206 0.78239 1.19189 1.19730 1.19775 1.21908 0.95230 0.87155 0.94759 1.20529 0.96680 0.97395 0.99870 0.92751 0.88161 0.95859 0.87753 0.91085 0.88519 0.93205 0.89267 0.90489 0.75598 0.93303 0.94877 0.91600 0.89131 0.90951 0.88894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 10.85 113.37 1.23 1.90 16 2 O -0.40 -10.12 10.32 -148.98 -1.54 -11.66 16 3 C 0.07 1.75 2.37 32.41 0.08 1.83 16 4 H 0.04 1.13 7.24 -2.39 -0.02 1.11 16 5 C 0.13 3.11 3.75 46.68 0.18 3.28 16 6 H 0.08 2.28 8.12 -2.39 -0.02 2.26 16 7 C -0.09 -1.26 4.92 -7.31 -0.04 -1.30 16 8 H 0.13 1.29 8.14 -2.39 -0.02 1.27 16 9 C -0.10 -1.17 6.55 33.61 0.22 -0.95 16 10 C -0.12 -1.82 4.95 -6.90 -0.03 -1.85 16 11 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 12 C -0.12 -1.51 5.78 32.23 0.19 -1.33 16 13 C -0.09 -0.98 4.30 -8.43 -0.04 -1.02 16 14 H 0.15 0.68 8.14 -2.39 -0.02 0.66 16 15 C 0.09 1.54 4.13 86.79 0.36 1.90 16 16 N -0.61 -16.03 2.60 -784.77 -2.04 -18.07 16 17 C 0.61 21.82 7.72 86.67 0.67 22.49 16 18 O -0.58 -24.23 15.26 -4.03 -0.06 -24.29 16 19 C -0.33 -12.51 6.06 -20.15 -0.12 -12.63 16 20 C 0.07 2.43 10.38 85.65 0.89 3.32 16 21 N -0.33 -14.59 12.50 -56.28 -0.70 -15.30 16 22 N -0.34 -15.91 3.56 -336.68 -1.20 -17.11 16 23 C 0.27 14.02 5.78 85.63 0.49 14.51 16 24 C -0.56 -30.96 9.39 25.60 0.24 -30.72 16 25 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 26 C 0.02 1.32 5.46 84.66 0.46 1.78 16 27 N -0.92 -51.51 13.29 21.45 0.28 -51.23 16 28 Si 0.97 42.78 29.54 68.60 2.03 44.81 16 29 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 30 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 31 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 32 C 0.15 6.26 7.00 42.14 0.30 6.55 16 33 C -0.09 -3.37 9.28 71.24 0.66 -2.71 16 34 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.02 0.57 8.11 -2.39 -0.02 0.55 16 37 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.07 1.00 8.06 -2.39 -0.02 0.98 16 39 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.05 0.88 7.21 -2.38 -0.02 0.87 16 41 H 0.09 1.30 7.10 -2.39 -0.02 1.29 16 42 H 0.08 1.46 6.42 -2.39 -0.02 1.44 16 43 H 0.23 5.47 4.67 -2.91 -0.01 5.46 16 44 H 0.05 2.58 7.64 -2.39 -0.02 2.56 16 45 H 0.03 1.86 8.14 -2.39 -0.02 1.84 16 46 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 47 H 0.09 3.21 8.14 -2.39 -0.02 3.20 16 48 H 0.07 2.92 7.71 -2.39 -0.02 2.90 16 49 H 0.09 3.56 6.65 -2.39 -0.02 3.55 16 Total: -1.00 -71.86 385.40 3.46 -68.40 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: 0.96 Total: 19.37 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: 5.73 Total: 5.07 kcal Atomic # 7 Polarization: -98.04 SS G_CDS: -3.66 Total: -101.70 kcal Atomic # 8 Polarization: -34.35 SS G_CDS: -1.60 Total: -35.95 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -71.86 3.46 -68.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897734565.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.631 kcal (2) G-P(sol) polarization free energy of solvation -71.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.51 seconds