Wall clock time and date at job start Wed Apr 1 2020 06:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.43024 * 114.00006 * 2 1 4 4 H 1.09396 * 111.05414 * 24.19411 * 3 2 1 5 5 C 1.58753 * 112.32479 * 258.07464 * 3 2 1 6 6 H 1.09286 * 116.66187 * 63.55038 * 5 3 2 7 7 C 1.56328 * 107.41585 * 196.11935 * 5 3 2 8 8 C 1.57040 * 108.77112 * 68.14555 * 7 5 3 9 9 H 1.09586 * 115.43963 * 126.18513 * 8 7 5 10 10 C 1.57668 * 106.53515 * 255.62889 * 8 7 5 11 11 N 1.51153 * 107.17110 * 94.60509 * 10 8 7 12 12 C 1.33427 * 133.33698 * 149.36775 * 11 10 8 13 13 O 1.21605 * 119.99375 * 5.39794 * 12 11 10 14 14 C 1.47430 * 120.00277 * 185.40222 * 12 11 10 15 15 C 1.41280 * 126.41401 * 355.25530 * 14 12 11 16 16 N 1.30449 * 108.02098 * 179.71212 * 15 14 12 17 17 N 1.39930 * 108.89882 * 0.40325 * 16 15 14 18 18 C 1.46502 * 125.75493 * 179.85435 * 17 16 15 19 19 C 1.50704 * 109.46705 * 269.68605 * 18 17 16 20 20 H 1.07997 * 120.00112 * 0.02562 * 19 18 17 21 21 C 1.37878 * 119.99886 * 179.97438 * 19 18 17 22 22 N 1.31511 * 120.00302 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 119.99709 * 359.72734 * 21 19 18 24 24 H 1.48502 * 109.46876 * 90.00385 * 23 21 19 25 25 H 1.48504 * 109.47288 * 209.99884 * 23 21 19 26 26 H 1.48501 * 109.47522 * 329.99930 * 23 21 19 27 27 C 1.34257 * 108.48813 * 359.58693 * 17 16 15 28 28 C 1.50706 * 126.28840 * 180.21864 * 27 17 16 29 29 C 1.42559 * 93.17155 * 329.32020 * 11 10 8 30 30 H 1.10711 * 78.63030 * 327.47863 * 29 11 10 31 31 C 1.59142 * 102.29758 * 63.59906 * 29 11 10 32 32 H 1.09210 * 120.33030 * 55.51682 * 31 29 11 33 33 C 1.57215 * 101.15345 * 189.98238 * 31 29 11 34 34 H 1.09001 * 109.47435 * 59.99722 * 1 2 3 35 35 H 1.08997 * 109.46951 * 180.02562 * 1 2 3 36 36 H 1.09003 * 109.46830 * 299.99877 * 1 2 3 37 37 H 1.09247 * 109.16884 * 187.28772 * 7 5 3 38 38 H 1.08705 * 110.07136 * 307.03432 * 7 5 3 39 39 H 1.08564 * 111.11393 * 333.71498 * 10 8 7 40 40 H 1.09342 * 109.54855 * 212.63395 * 10 8 7 41 41 H 1.07999 * 125.99093 * 0.02562 * 15 14 12 42 42 H 1.09004 * 109.46947 * 149.69506 * 18 17 16 43 43 H 1.08994 * 109.47191 * 29.68958 * 18 17 16 44 44 H 0.97000 * 120.00500 * 179.97438 * 22 21 19 45 45 H 1.09000 * 109.47086 * 90.02894 * 28 27 17 46 46 H 1.09001 * 109.46888 * 210.02617 * 28 27 17 47 47 H 1.08994 * 109.47405 * 330.02843 * 28 27 17 48 48 H 1.08903 * 112.11266 * 277.30592 * 33 31 29 49 49 H 1.09156 * 111.76393 * 151.76760 * 33 31 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0107 1.3066 0.0000 4 1 1.3198 2.0444 0.4184 5 6 2.5332 1.7341 -1.4368 6 1 1.7806 1.8326 -2.2231 7 6 3.4938 2.9520 -1.2422 8 6 4.7884 2.4611 -0.5011 9 1 5.7349 2.6987 -0.9996 10 6 4.6679 2.9591 0.9901 11 7 4.0684 1.8265 1.7917 12 6 4.1942 1.4366 3.0615 13 8 4.8406 2.1083 3.8425 14 6 3.5498 0.1915 3.5177 15 6 2.6964 -0.6386 2.7570 16 7 2.3365 -1.6431 3.5074 17 7 2.9262 -1.5009 4.7684 18 6 2.7663 -2.4214 5.8969 19 6 1.5878 -1.9920 6.7322 20 1 1.0150 -1.1209 6.4505 21 6 1.2402 -2.7119 7.8556 22 7 0.2115 -2.3375 8.5844 23 14 2.2255 -4.2239 8.3378 24 1 3.3348 -3.8245 9.2407 25 1 1.3404 -5.1890 9.0381 26 1 2.7847 -4.8602 7.1181 27 6 3.6679 -0.3818 4.7679 28 6 4.4797 0.1508 5.9205 29 6 3.3190 1.3336 0.6836 30 1 3.3231 2.4214 0.4778 31 6 4.4635 0.9031 -0.3350 32 1 5.2397 0.1993 -0.0271 33 6 3.6237 0.6179 -1.6331 34 1 -0.3634 0.5139 -0.8899 35 1 -0.3633 -1.0276 0.0005 36 1 -0.3633 0.5138 0.8900 37 1 3.7686 3.3520 -2.2209 38 1 2.9985 3.7294 -0.6661 39 1 4.0446 3.8454 1.0572 40 1 5.6635 3.1831 1.3825 41 1 2.3986 -0.4734 1.7321 42 1 3.6690 -2.4075 6.5078 43 1 2.5972 -3.4306 5.5214 44 1 -0.0333 -2.8441 9.3745 45 1 5.4885 -0.2594 5.8745 46 1 4.5265 1.2381 5.8601 47 1 4.0113 -0.1411 6.8604 48 1 3.1878 -0.3801 -1.6283 49 1 4.2086 0.7876 -2.5389 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897734567.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:18:16 Heat of formation + Delta-G solvation = 171.197461 kcal Electronic energy + Delta-G solvation = -31875.982281 eV Core-core repulsion = 27811.870659 eV Total energy + Delta-G solvation = -4064.111623 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.37557 -40.58031 -38.36853 -37.40059 -34.72134 -33.77204 -32.09226 -31.24528 -30.64753 -28.73882 -28.53241 -27.53154 -26.59049 -26.30474 -24.93077 -23.15704 -22.54769 -21.00869 -20.53572 -19.41471 -19.09003 -18.29856 -17.15434 -17.02281 -16.89231 -16.10227 -15.87241 -15.25126 -15.14088 -14.89447 -14.55120 -14.42420 -14.14207 -13.93978 -13.56241 -13.33330 -12.99499 -12.65794 -12.57909 -12.47879 -12.36877 -12.13055 -12.00598 -11.75905 -11.68028 -11.50231 -11.41664 -11.21295 -11.13539 -10.96771 -10.86646 -10.79831 -10.77236 -10.32769 -10.15520 -9.74723 -9.73120 -9.61935 -8.92059 -8.80521 -8.49908 -8.43050 -7.78436 -6.28418 -4.32378 2.22267 2.27153 2.93421 3.13759 3.20763 3.22901 3.35803 3.48945 3.81421 3.93614 4.03166 4.07978 4.16251 4.20125 4.39568 4.61863 4.68891 4.75046 4.89183 4.98000 5.00003 5.15230 5.23296 5.30148 5.34143 5.38359 5.42276 5.47235 5.52342 5.52684 5.63652 5.68181 5.71982 5.75674 5.77341 5.83236 5.95858 6.00695 6.09042 6.15200 6.25327 6.37035 6.57215 6.61923 6.75041 6.97471 7.24408 7.29881 7.71180 7.97216 8.26500 8.46315 8.63016 8.75836 9.26064 10.83908 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016947 B = 0.003188 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.772035 B = 8779.673288 C = 9731.339497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.368 6.368 3 C 0.149 3.851 4 H 0.077 0.923 5 C -0.119 4.119 6 H 0.116 0.884 7 C -0.122 4.122 8 C -0.117 4.117 9 H 0.108 0.892 10 C 0.116 3.884 11 N -0.586 5.586 12 C 0.621 3.379 13 O -0.558 6.558 14 C -0.329 4.329 15 C 0.064 3.936 16 N -0.298 5.298 17 N -0.317 5.317 18 C 0.225 3.775 19 C -0.543 4.543 20 H 0.081 0.919 21 C 0.081 3.919 22 N -0.885 5.885 23 Si 0.872 3.128 24 H -0.270 1.270 25 H -0.279 1.279 26 H -0.263 1.263 27 C 0.164 3.836 28 C -0.100 4.100 29 C -0.001 4.001 30 H 0.087 0.913 31 C -0.091 4.091 32 H 0.122 0.878 33 C -0.113 4.113 34 H 0.041 0.959 35 H 0.090 0.910 36 H 0.045 0.955 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.199 0.801 42 H 0.046 0.954 43 H 0.054 0.946 44 H 0.269 0.731 45 H 0.074 0.926 46 H 0.097 0.903 47 H 0.082 0.918 48 H 0.085 0.915 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.801 9.909 -23.040 25.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.287 6.287 3 C 0.090 3.910 4 H 0.095 0.905 5 C -0.139 4.139 6 H 0.134 0.866 7 C -0.160 4.160 8 C -0.135 4.135 9 H 0.126 0.874 10 C -0.005 4.005 11 N -0.318 5.318 12 C 0.415 3.585 13 O -0.438 6.438 14 C -0.344 4.344 15 C -0.123 4.123 16 N -0.117 5.117 17 N -0.093 5.093 18 C 0.106 3.894 19 C -0.581 4.581 20 H 0.099 0.901 21 C -0.124 4.124 22 N -0.521 5.521 23 Si 0.698 3.302 24 H -0.195 1.195 25 H -0.204 1.204 26 H -0.187 1.187 27 C 0.027 3.973 28 C -0.158 4.158 29 C -0.107 4.107 30 H 0.104 0.896 31 C -0.111 4.111 32 H 0.140 0.860 33 C -0.151 4.151 34 H 0.059 0.941 35 H 0.108 0.892 36 H 0.063 0.937 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.215 0.785 42 H 0.064 0.936 43 H 0.072 0.928 44 H 0.080 0.920 45 H 0.093 0.907 46 H 0.116 0.884 47 H 0.101 0.899 48 H 0.103 0.897 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.443 8.881 -22.049 24.628 hybrid contribution 0.391 0.207 0.510 0.675 sum 6.834 9.088 -21.540 24.357 Atomic orbital electron populations 1.22862 0.80866 1.03425 0.99889 1.88052 1.19858 1.26845 1.93942 1.22675 0.89733 0.86045 0.92594 0.90483 1.24746 0.97134 0.95973 0.96008 0.86598 1.23192 0.94472 0.97095 1.01204 1.25749 0.97991 0.96444 0.93354 0.87419 1.23293 0.99413 0.87778 0.89991 1.48621 1.45092 1.30770 1.07365 1.16897 0.78672 0.83364 0.79534 1.90689 1.43964 1.56298 1.52870 1.19626 1.16080 1.02617 0.96040 1.24566 0.95629 0.91718 1.00383 1.77166 1.20371 1.23681 0.90522 1.48899 1.31974 1.17913 1.10535 1.20101 0.98887 0.88980 0.81402 1.21119 1.12719 1.15212 1.09047 0.90087 1.24794 0.94880 0.97194 0.95532 1.69865 1.26099 1.39825 1.16333 0.86903 0.80521 0.83188 0.79565 1.19539 1.20412 1.18747 1.21418 0.92800 0.87603 0.95478 1.20635 0.97685 1.03091 0.94359 1.22630 0.94072 1.07187 0.86769 0.89568 1.25529 0.97039 0.94130 0.94408 0.86022 1.23451 0.95687 0.99322 0.96610 0.94080 0.89195 0.93674 0.90664 0.91323 0.90442 0.90332 0.78521 0.93604 0.92785 0.92046 0.90696 0.88441 0.89886 0.89680 0.91205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.84 101.05 1.09 1.34 16 2 O -0.37 -4.24 7.46 -35.23 -0.26 -4.50 16 3 C 0.15 1.47 3.05 -26.13 -0.08 1.39 16 4 H 0.08 0.72 7.85 -51.70 -0.41 0.31 16 5 C -0.12 -0.81 5.27 -83.32 -0.44 -1.24 16 6 H 0.12 0.59 8.17 -51.77 -0.42 0.16 16 7 C -0.12 -0.71 5.34 -22.75 -0.12 -0.83 16 8 C -0.12 -0.85 4.92 -81.93 -0.40 -1.25 16 9 H 0.11 0.60 8.19 -51.60 -0.42 0.18 16 10 C 0.12 1.18 6.41 1.13 0.01 1.18 16 11 N -0.59 -8.50 3.17 -212.83 -0.68 -9.17 16 12 C 0.62 11.74 7.98 -13.12 -0.10 11.63 16 13 O -0.56 -11.64 15.51 5.27 0.08 -11.56 16 14 C -0.33 -6.79 6.11 -105.07 -0.64 -7.44 16 15 C 0.06 1.30 11.11 -16.98 -0.19 1.11 16 16 N -0.30 -6.93 12.50 30.86 0.39 -6.54 16 17 N -0.32 -7.52 3.56 -57.77 -0.21 -7.73 16 18 C 0.23 5.51 4.85 -5.19 -0.03 5.48 16 19 C -0.54 -15.35 9.94 -34.44 -0.34 -15.70 16 20 H 0.08 2.59 8.06 -52.49 -0.42 2.17 16 21 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 22 N -0.88 -26.38 13.96 55.43 0.77 -25.61 16 23 Si 0.87 20.28 27.47 -169.99 -4.67 15.61 16 24 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 26 H -0.26 -5.86 6.54 56.52 0.37 -5.49 16 27 C 0.16 3.59 7.01 -81.60 -0.57 3.02 16 28 C -0.10 -1.91 9.39 36.01 0.34 -1.57 16 29 C 0.00 -0.02 3.24 -69.17 -0.22 -0.24 16 30 H 0.09 0.87 1.25 -155.91 -0.19 0.67 16 31 C -0.09 -0.88 5.98 -80.95 -0.48 -1.36 16 32 H 0.12 1.29 8.16 -51.81 -0.42 0.87 16 33 C -0.11 -0.87 6.21 -22.12 -0.14 -1.01 16 34 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 35 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.04 0.46 8.12 -51.93 -0.42 0.04 16 37 H 0.07 0.32 8.16 -51.79 -0.42 -0.10 16 38 H 0.07 0.39 6.84 -52.09 -0.36 0.03 16 39 H 0.08 0.69 7.10 -52.17 -0.37 0.32 16 40 H 0.08 0.83 8.17 -51.74 -0.42 0.41 16 41 H 0.20 3.49 3.49 -52.49 -0.18 3.30 16 42 H 0.05 1.04 7.06 -51.93 -0.37 0.67 16 43 H 0.05 1.32 7.19 -51.93 -0.37 0.95 16 44 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 45 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 46 H 0.10 1.87 6.42 -51.93 -0.33 1.54 16 47 H 0.08 1.62 7.70 -51.93 -0.40 1.22 16 48 H 0.08 0.77 7.44 -51.98 -0.39 0.38 16 49 H 0.07 0.43 8.15 -51.84 -0.42 0.01 16 LS Contribution 377.78 15.07 5.69 5.69 Total: -1.00 -34.50 377.78 -8.49 -42.99 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -7.19 Total: 4.14 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: -2.42 Total: -3.31 kcal Atomic # 7 Polarization: -49.34 SS G_CDS: 0.28 Total: -49.06 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: -0.18 Total: -16.06 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -4.67 Total: 15.61 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.50 -8.49 -42.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897734567.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 214.187 kcal (2) G-P(sol) polarization free energy of solvation -34.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 179.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 171.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds