Wall clock time and date at job start Wed Apr 1 2020 06:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.43024 * 114.00006 * 2 1 4 4 H 1.09396 * 111.05414 * 24.19411 * 3 2 1 5 5 C 1.58753 * 112.32479 * 258.07464 * 3 2 1 6 6 H 1.09286 * 116.66187 * 63.55038 * 5 3 2 7 7 C 1.56328 * 107.41585 * 196.11935 * 5 3 2 8 8 C 1.57040 * 108.77112 * 68.14555 * 7 5 3 9 9 H 1.09586 * 115.43963 * 126.18513 * 8 7 5 10 10 C 1.57668 * 106.53515 * 255.62889 * 8 7 5 11 11 N 1.51153 * 107.17110 * 94.60509 * 10 8 7 12 12 C 1.33427 * 133.33698 * 149.36775 * 11 10 8 13 13 O 1.21605 * 119.99375 * 5.39794 * 12 11 10 14 14 C 1.47430 * 120.00277 * 185.40222 * 12 11 10 15 15 C 1.41280 * 126.41401 * 355.25530 * 14 12 11 16 16 N 1.30449 * 108.02098 * 179.71212 * 15 14 12 17 17 N 1.39930 * 108.89882 * 0.40325 * 16 15 14 18 18 C 1.46502 * 125.75493 * 179.85435 * 17 16 15 19 19 C 1.50704 * 109.46705 * 269.68605 * 18 17 16 20 20 H 1.07997 * 120.00112 * 0.02562 * 19 18 17 21 21 C 1.37878 * 119.99886 * 179.97438 * 19 18 17 22 22 N 1.31511 * 120.00302 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 119.99709 * 359.72734 * 21 19 18 24 24 H 1.48502 * 109.46876 * 90.00385 * 23 21 19 25 25 H 1.48504 * 109.47288 * 209.99884 * 23 21 19 26 26 H 1.48501 * 109.47522 * 329.99930 * 23 21 19 27 27 C 1.34257 * 108.48813 * 359.58693 * 17 16 15 28 28 C 1.50706 * 126.28840 * 180.21864 * 27 17 16 29 29 C 1.42559 * 93.17155 * 329.32020 * 11 10 8 30 30 H 1.10711 * 78.63030 * 327.47863 * 29 11 10 31 31 C 1.59142 * 102.29758 * 63.59906 * 29 11 10 32 32 H 1.09210 * 120.33030 * 55.51682 * 31 29 11 33 33 C 1.57215 * 101.15345 * 189.98238 * 31 29 11 34 34 H 1.09001 * 109.47435 * 59.99722 * 1 2 3 35 35 H 1.08997 * 109.46951 * 180.02562 * 1 2 3 36 36 H 1.09003 * 109.46830 * 299.99877 * 1 2 3 37 37 H 1.09247 * 109.16884 * 187.28772 * 7 5 3 38 38 H 1.08705 * 110.07136 * 307.03432 * 7 5 3 39 39 H 1.08564 * 111.11393 * 333.71498 * 10 8 7 40 40 H 1.09342 * 109.54855 * 212.63395 * 10 8 7 41 41 H 1.07999 * 125.99093 * 0.02562 * 15 14 12 42 42 H 1.09004 * 109.46947 * 149.69506 * 18 17 16 43 43 H 1.08994 * 109.47191 * 29.68958 * 18 17 16 44 44 H 0.97000 * 120.00500 * 179.97438 * 22 21 19 45 45 H 1.09000 * 109.47086 * 90.02894 * 28 27 17 46 46 H 1.09001 * 109.46888 * 210.02617 * 28 27 17 47 47 H 1.08994 * 109.47405 * 330.02843 * 28 27 17 48 48 H 1.08903 * 112.11266 * 277.30592 * 33 31 29 49 49 H 1.09156 * 111.76393 * 151.76760 * 33 31 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0107 1.3066 0.0000 4 1 1.3198 2.0444 0.4184 5 6 2.5332 1.7341 -1.4368 6 1 1.7806 1.8326 -2.2231 7 6 3.4938 2.9520 -1.2422 8 6 4.7884 2.4611 -0.5011 9 1 5.7349 2.6987 -0.9996 10 6 4.6679 2.9591 0.9901 11 7 4.0684 1.8265 1.7917 12 6 4.1942 1.4366 3.0615 13 8 4.8406 2.1083 3.8425 14 6 3.5498 0.1915 3.5177 15 6 2.6964 -0.6386 2.7570 16 7 2.3365 -1.6431 3.5074 17 7 2.9262 -1.5009 4.7684 18 6 2.7663 -2.4214 5.8969 19 6 1.5878 -1.9920 6.7322 20 1 1.0150 -1.1209 6.4505 21 6 1.2402 -2.7119 7.8556 22 7 0.2115 -2.3375 8.5844 23 14 2.2255 -4.2239 8.3378 24 1 3.3348 -3.8245 9.2407 25 1 1.3404 -5.1890 9.0381 26 1 2.7847 -4.8602 7.1181 27 6 3.6679 -0.3818 4.7679 28 6 4.4797 0.1508 5.9205 29 6 3.3190 1.3336 0.6836 30 1 3.3231 2.4214 0.4778 31 6 4.4635 0.9031 -0.3350 32 1 5.2397 0.1993 -0.0271 33 6 3.6237 0.6179 -1.6331 34 1 -0.3634 0.5139 -0.8899 35 1 -0.3633 -1.0276 0.0005 36 1 -0.3633 0.5138 0.8900 37 1 3.7686 3.3520 -2.2209 38 1 2.9985 3.7294 -0.6661 39 1 4.0446 3.8454 1.0572 40 1 5.6635 3.1831 1.3825 41 1 2.3986 -0.4734 1.7321 42 1 3.6690 -2.4075 6.5078 43 1 2.5972 -3.4306 5.5214 44 1 -0.0333 -2.8441 9.3745 45 1 5.4885 -0.2594 5.8745 46 1 4.5265 1.2381 5.8601 47 1 4.0113 -0.1411 6.8604 48 1 3.1878 -0.3801 -1.6283 49 1 4.2086 0.7876 -2.5389 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897734567.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:18:15 Heat of formation + Delta-G solvation = 147.758773 kcal Electronic energy + Delta-G solvation = -31876.998659 eV Core-core repulsion = 27811.870659 eV Total energy + Delta-G solvation = -4065.128000 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 15.74 seconds Orbital eigenvalues (eV) -44.15781 -42.25663 -39.66786 -38.31660 -35.86417 -35.58681 -34.00458 -32.88787 -31.58420 -29.90529 -29.28694 -29.05995 -27.99664 -27.16890 -25.83122 -24.85269 -23.86970 -22.45929 -21.20534 -20.67228 -20.14270 -19.50217 -19.30814 -18.27866 -17.71182 -17.08856 -16.96192 -16.69890 -16.56114 -16.10975 -15.86019 -15.65876 -15.34091 -15.06477 -14.95723 -14.50943 -14.39964 -14.23878 -14.03517 -13.78778 -13.71629 -13.33298 -13.17018 -13.15194 -13.01828 -12.59299 -12.40472 -12.34294 -12.19570 -12.15367 -11.87736 -11.87561 -11.72259 -11.58446 -11.56318 -11.45726 -11.00827 -10.94137 -10.49138 -10.26860 -9.93956 -9.69943 -9.29660 -8.45700 -6.58123 0.59951 1.23632 1.29494 1.32153 1.34970 1.44464 1.73018 2.22607 2.41368 2.73598 2.82784 2.88632 3.31759 3.35153 3.54087 3.67079 3.70134 3.85276 3.98431 4.01367 4.09560 4.15243 4.18889 4.33225 4.37521 4.43845 4.46056 4.55593 4.59139 4.61221 4.62888 4.68440 4.71954 4.73713 4.90910 4.94523 4.96533 5.02561 5.05139 5.09177 5.14427 5.15010 5.27216 5.28203 5.38571 5.41268 5.64969 5.81457 6.19531 6.21824 6.44089 6.73507 6.79164 7.05656 7.20851 8.70949 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016947 B = 0.003188 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.772035 B = 8779.673288 C = 9731.339497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.391 6.391 3 C 0.135 3.865 4 H 0.078 0.922 5 C -0.100 4.100 6 H 0.143 0.857 7 C -0.121 4.121 8 C -0.096 4.096 9 H 0.136 0.864 10 C 0.105 3.895 11 N -0.590 5.590 12 C 0.612 3.388 13 O -0.589 6.589 14 C -0.335 4.335 15 C 0.076 3.924 16 N -0.333 5.333 17 N -0.337 5.337 18 C 0.234 3.766 19 C -0.555 4.555 20 H 0.023 0.977 21 C 0.024 3.976 22 N -0.934 5.934 23 Si 0.951 3.049 24 H -0.251 1.251 25 H -0.274 1.274 26 H -0.244 1.244 27 C 0.145 3.855 28 C -0.091 4.091 29 C -0.043 4.043 30 H 0.114 0.886 31 C -0.101 4.101 32 H 0.103 0.897 33 C -0.106 4.106 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.030 0.970 37 H 0.107 0.893 38 H 0.075 0.925 39 H 0.095 0.905 40 H 0.073 0.927 41 H 0.221 0.779 42 H 0.071 0.929 43 H 0.056 0.944 44 H 0.275 0.725 45 H 0.100 0.900 46 H 0.094 0.906 47 H 0.074 0.926 48 H 0.067 0.933 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.483 10.408 -26.064 29.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.310 6.310 3 C 0.077 3.923 4 H 0.096 0.904 5 C -0.119 4.119 6 H 0.161 0.839 7 C -0.158 4.158 8 C -0.114 4.114 9 H 0.153 0.847 10 C -0.013 4.013 11 N -0.322 5.322 12 C 0.405 3.595 13 O -0.472 6.472 14 C -0.350 4.350 15 C -0.111 4.111 16 N -0.153 5.153 17 N -0.114 5.114 18 C 0.115 3.885 19 C -0.593 4.593 20 H 0.042 0.958 21 C -0.176 4.176 22 N -0.572 5.572 23 Si 0.771 3.229 24 H -0.175 1.175 25 H -0.199 1.199 26 H -0.168 1.168 27 C 0.009 3.991 28 C -0.149 4.149 29 C -0.147 4.147 30 H 0.130 0.870 31 C -0.120 4.120 32 H 0.121 0.879 33 C -0.144 4.144 34 H 0.090 0.910 35 H 0.104 0.896 36 H 0.048 0.952 37 H 0.126 0.874 38 H 0.094 0.906 39 H 0.113 0.887 40 H 0.091 0.909 41 H 0.236 0.764 42 H 0.089 0.911 43 H 0.074 0.926 44 H 0.085 0.915 45 H 0.119 0.881 46 H 0.113 0.887 47 H 0.093 0.907 48 H 0.086 0.914 49 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 8.126 9.413 -25.148 28.055 hybrid contribution -0.217 0.197 1.340 1.371 sum 7.908 9.609 -23.809 26.865 Atomic orbital electron populations 1.22936 0.80181 1.03510 1.00660 1.88000 1.20745 1.28092 1.94167 1.23088 0.89087 0.85509 0.94653 0.90424 1.24804 0.97247 0.95847 0.94029 0.83898 1.23219 0.93156 0.96622 1.02804 1.25760 1.00338 0.94029 0.91320 0.84654 1.23708 0.99221 0.86991 0.91390 1.48863 1.44962 1.31762 1.06567 1.16752 0.78704 0.82815 0.81276 1.90649 1.45330 1.56922 1.54332 1.20060 1.15724 1.03441 0.95744 1.24958 0.94526 0.90681 1.00920 1.77088 1.21747 1.25419 0.91028 1.48819 1.33243 1.18784 1.10557 1.19908 0.98054 0.89086 0.81490 1.21163 1.13882 1.13820 1.10401 0.95843 1.25825 0.95939 1.00900 0.94941 1.70020 1.28211 1.41804 1.17154 0.85679 0.79100 0.78056 0.80038 1.17469 1.19950 1.16786 1.21985 0.92917 0.87315 0.96845 1.20632 0.98536 1.02847 0.92899 1.23300 0.96169 1.09718 0.85541 0.86982 1.25523 0.96149 0.95797 0.94577 0.87862 1.23417 0.95774 0.98909 0.96300 0.90988 0.89572 0.95164 0.87431 0.90616 0.88728 0.90885 0.76359 0.91121 0.92586 0.91548 0.88115 0.88740 0.90739 0.91420 0.88716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 10.84 113.37 1.23 1.66 16 2 O -0.39 -8.77 7.46 -148.98 -1.11 -9.88 16 3 C 0.14 2.46 3.05 30.98 0.09 2.55 16 4 H 0.08 1.34 7.85 -2.18 -0.02 1.33 16 5 C -0.10 -0.95 5.27 -6.07 -0.03 -0.98 16 6 H 0.14 0.68 8.17 -2.24 -0.02 0.67 16 7 C -0.12 -0.80 5.34 33.17 0.18 -0.62 16 8 C -0.10 -1.04 4.92 -5.16 -0.03 -1.07 16 9 H 0.14 0.83 8.19 -2.08 -0.02 0.81 16 10 C 0.11 1.94 6.41 87.12 0.56 2.50 16 11 N -0.59 -16.95 3.17 -946.29 -3.00 -19.96 16 12 C 0.61 23.69 7.98 86.87 0.69 24.38 16 13 O -0.59 -25.21 15.51 -4.05 -0.06 -25.27 16 14 C -0.33 -14.34 6.11 -20.16 -0.12 -14.47 16 15 C 0.08 3.19 11.11 85.65 0.95 4.14 16 16 N -0.33 -16.13 12.50 -56.28 -0.70 -16.84 16 17 N -0.34 -16.58 3.56 -336.69 -1.20 -17.78 16 18 C 0.23 11.65 4.85 85.63 0.42 12.06 16 19 C -0.55 -32.80 9.94 25.60 0.25 -32.54 16 20 H 0.02 1.60 8.06 -2.91 -0.02 1.58 16 21 C 0.02 1.39 5.47 84.66 0.46 1.85 16 22 N -0.93 -57.65 13.96 21.45 0.30 -57.35 16 23 Si 0.95 41.69 27.47 68.60 1.88 43.57 16 24 H -0.25 -10.21 7.11 99.48 0.71 -9.50 16 25 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 26 H -0.24 -9.94 6.54 99.48 0.65 -9.29 16 27 C 0.15 6.59 7.01 42.14 0.30 6.88 16 28 C -0.09 -3.58 9.39 71.24 0.67 -2.91 16 29 C -0.04 -0.97 3.24 46.25 0.15 -0.82 16 30 H 0.11 1.99 1.25 -137.74 -0.17 1.81 16 31 C -0.10 -1.74 5.98 -4.53 -0.03 -1.77 16 32 H 0.10 2.15 8.16 -2.28 -0.02 2.13 16 33 C -0.11 -1.30 6.21 33.58 0.21 -1.09 16 34 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.03 0.63 8.12 -2.39 -0.02 0.61 16 37 H 0.11 0.19 8.16 -2.26 -0.02 0.17 16 38 H 0.08 0.48 6.84 -2.54 -0.02 0.46 16 39 H 0.09 1.43 7.10 -2.62 -0.02 1.41 16 40 H 0.07 1.44 8.17 -2.21 -0.02 1.42 16 41 H 0.22 7.98 3.49 -2.91 -0.01 7.97 16 42 H 0.07 3.14 7.06 -2.38 -0.02 3.13 16 43 H 0.06 2.74 7.19 -2.39 -0.02 2.72 16 44 H 0.28 15.59 8.31 -92.71 -0.77 14.82 16 45 H 0.10 3.37 8.14 -2.39 -0.02 3.35 16 46 H 0.09 3.76 6.42 -2.39 -0.02 3.75 16 47 H 0.07 3.01 7.70 -2.39 -0.02 2.99 16 48 H 0.07 1.10 7.44 -2.44 -0.02 1.08 16 49 H 0.09 0.73 8.15 -2.30 -0.02 0.71 16 Total: -1.00 -81.09 377.78 2.82 -78.27 By element: Atomic # 1 Polarization: 24.71 SS G_CDS: 0.76 Total: 25.47 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: 5.95 Total: -0.24 kcal Atomic # 7 Polarization: -107.32 SS G_CDS: -4.61 Total: -111.92 kcal Atomic # 8 Polarization: -33.98 SS G_CDS: -1.17 Total: -35.15 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 1.88 Total: 43.57 kcal Total: -81.09 2.82 -78.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897734567.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 226.031 kcal (2) G-P(sol) polarization free energy of solvation -81.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 15.74 seconds