Wall clock time and date at job start Wed Apr 1 2020 03:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46904 * 109.45914 * 2 1 4 4 C 1.53039 * 109.45857 * 119.97314 * 2 1 3 5 5 C 1.53190 * 109.31286 * 181.38674 * 4 2 1 6 6 N 1.46931 * 108.77766 * 305.36835 * 5 4 2 7 7 C 1.34777 * 120.62818 * 233.61117 * 6 5 4 8 8 O 1.21357 * 120.00372 * 356.34931 * 7 6 5 9 9 C 1.49354 * 119.99929 * 176.35279 * 7 6 5 10 10 O 1.21379 * 119.99886 * 7.08415 * 9 7 6 11 11 N 1.34769 * 120.00246 * 187.08779 * 9 7 6 12 12 C 1.39721 * 120.00350 * 185.16958 * 11 9 7 13 13 C 1.38936 * 120.07994 * 207.64250 * 12 11 9 14 14 C 1.38091 * 119.92128 * 179.72552 * 13 12 11 15 15 C 1.38295 * 120.08133 * 0.57363 * 14 13 12 16 16 C 1.50697 * 119.92543 * 179.72195 * 15 14 13 17 17 C 1.50692 * 109.47426 * 269.97591 * 16 15 14 18 18 H 1.08004 * 120.00279 * 0.02562 * 17 16 15 19 19 C 1.37880 * 120.00369 * 179.97438 * 17 16 15 20 20 N 1.31511 * 119.99489 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00077 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47012 * 60.00770 * 21 19 17 23 23 H 1.48502 * 109.47075 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47601 * 300.00342 * 21 19 17 25 25 C 1.38293 * 120.15038 * 359.69915 * 15 14 13 26 26 C 1.38103 * 120.07417 * 0.02562 * 25 15 14 27 27 C 1.46920 * 118.73932 * 53.60275 * 6 5 4 28 28 C 1.53042 * 109.46033 * 240.04060 * 2 1 3 29 29 H 1.08995 * 109.47509 * 300.02689 * 1 2 3 30 30 H 1.09003 * 109.47071 * 60.03077 * 1 2 3 31 31 H 1.09008 * 109.47092 * 180.02562 * 1 2 3 32 32 H 1.00897 * 110.99925 * 299.97378 * 3 2 1 33 33 H 1.00896 * 110.99747 * 63.92705 * 3 2 1 34 34 H 1.08993 * 109.49908 * 61.43582 * 4 2 1 35 35 H 1.08997 * 109.52368 * 301.35629 * 4 2 1 36 36 H 1.09007 * 109.58605 * 65.15008 * 5 4 2 37 37 H 1.08995 * 109.59074 * 185.57395 * 5 4 2 38 38 H 0.97000 * 120.00140 * 5.16939 * 11 9 7 39 39 H 1.07996 * 120.03146 * 359.97438 * 13 12 11 40 40 H 1.08001 * 119.96062 * 180.29463 * 14 13 12 41 41 H 1.09004 * 109.47195 * 29.98205 * 16 15 14 42 42 H 1.09000 * 109.46681 * 149.97378 * 16 15 14 43 43 H 0.97008 * 119.99947 * 179.97438 * 20 19 17 44 44 H 1.07991 * 119.96364 * 180.02562 * 25 15 14 45 45 H 1.08005 * 120.03645 * 179.97438 * 26 25 15 46 46 H 1.09005 * 109.59226 * 186.61012 * 27 6 5 47 47 H 1.09002 * 109.70598 * 66.25313 * 27 6 5 48 48 H 1.08998 * 109.49679 * 298.56526 * 28 2 1 49 49 H 1.09000 * 109.49693 * 58.66238 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0194 1.3851 0.0000 4 6 2.0398 -0.7209 1.2500 5 6 3.5713 -0.6887 1.2642 6 7 4.0679 -1.2487 -0.0001 7 6 4.9617 -2.2574 -0.0002 8 8 5.4142 -2.6674 1.0486 9 6 5.3956 -2.8707 -1.2911 10 8 5.0448 -2.3798 -2.3443 11 7 6.1765 -3.9690 -1.2866 12 6 6.6712 -4.4796 -2.4894 13 6 6.9599 -5.8337 -2.6049 14 6 7.4434 -6.3357 -3.7970 15 6 7.6514 -5.4904 -4.8715 16 6 8.1851 -6.0410 -6.1689 17 6 9.6909 -5.9853 -6.1567 18 1 10.2098 -5.5910 -5.2954 19 6 10.4064 -6.4386 -7.2446 20 7 9.7746 -6.9191 -8.2931 21 14 12.2730 -6.3689 -7.2297 22 1 12.7896 -7.1794 -6.0977 23 1 12.7989 -6.9127 -8.5076 24 1 12.7146 -4.9599 -7.0718 25 6 7.3705 -4.1410 -4.7584 26 6 6.8814 -3.6332 -3.5709 27 6 3.5714 -0.6884 -1.2643 28 6 2.0398 -0.7206 -1.2502 29 1 -0.3634 0.5142 0.8897 30 1 -0.3633 0.5134 -0.8903 31 1 -0.3634 -1.0277 0.0005 32 1 1.6961 1.8828 -0.8160 33 1 1.7494 1.8639 0.8461 34 1 1.6978 -1.7557 1.2381 35 1 1.6571 -0.2215 2.1401 36 1 3.9142 0.3408 1.3674 37 1 3.9416 -1.2847 2.0983 38 1 6.3951 -4.4052 -0.4482 39 1 6.8026 -6.4934 -1.7644 40 1 7.6635 -7.3891 -3.8889 41 1 7.8606 -7.0750 -6.2856 42 1 7.8061 -5.4454 -6.9994 43 1 10.2780 -7.2378 -9.0588 44 1 7.5337 -3.4837 -5.5996 45 1 6.6626 -2.5792 -3.4831 46 1 3.9417 -1.2842 -2.0986 47 1 3.9142 0.3409 -1.3698 48 1 1.6978 -1.7555 -1.2385 49 1 1.6572 -0.2205 -2.1399 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000927797797.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:12 Heat of formation + Delta-G solvation = -27.789718 kcal Electronic energy + Delta-G solvation = -29781.008517 eV Core-core repulsion = 25708.268163 eV Total energy + Delta-G solvation = -4072.740354 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.37692 -39.85314 -38.61171 -38.02897 -35.68176 -34.61574 -33.03129 -31.52031 -30.61269 -30.37454 -30.27234 -28.79991 -27.09781 -25.30196 -23.80633 -23.45354 -22.52157 -22.27223 -20.72563 -20.15608 -19.38946 -17.95874 -17.32207 -16.73868 -16.39452 -16.30430 -16.19717 -15.61269 -15.25882 -14.98611 -14.87263 -14.55545 -14.27207 -14.10928 -13.99457 -13.70505 -13.52528 -13.23226 -13.03385 -12.82796 -12.68180 -12.62565 -12.25470 -12.19163 -12.08302 -11.70949 -11.51727 -11.40469 -11.28706 -10.96890 -10.81866 -10.73652 -10.60180 -10.40965 -10.11977 -9.59850 -9.35380 -9.34297 -9.01910 -8.81862 -8.42447 -8.34326 -7.45245 -6.03927 -4.08096 1.07256 1.98799 2.03907 2.18068 3.06230 3.32648 3.33899 3.36723 3.40086 3.99323 4.09830 4.22159 4.36029 4.38547 4.53104 4.56191 4.77025 4.95060 5.09505 5.13656 5.18703 5.29804 5.31709 5.36794 5.39041 5.46743 5.48638 5.54728 5.59346 5.61986 5.69318 5.90942 5.93881 6.01849 6.09248 6.13764 6.21910 6.59544 6.61129 6.69736 6.80480 6.95197 6.99367 7.11538 7.15132 7.24369 7.48691 7.59175 7.66267 7.83552 7.88871 7.91590 8.31478 8.96941 9.55702 11.05594 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.024305 B = 0.001932 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.734007 B =14488.063543 C =14873.544621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.111 3.889 3 N -0.836 5.836 4 C -0.120 4.120 5 C 0.117 3.883 6 N -0.570 5.570 7 C 0.508 3.492 8 O -0.528 6.528 9 C 0.505 3.495 10 O -0.492 6.492 11 N -0.629 5.629 12 C 0.095 3.905 13 C -0.138 4.138 14 C -0.107 4.107 15 C -0.038 4.038 16 C 0.047 3.953 17 C -0.512 4.512 18 H 0.057 0.943 19 C 0.058 3.942 20 N -0.894 5.894 21 Si 0.896 3.104 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.276 1.276 25 C -0.107 4.107 26 C -0.119 4.119 27 C 0.053 3.947 28 C -0.118 4.118 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.342 0.658 33 H 0.339 0.661 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.418 0.582 39 H 0.117 0.883 40 H 0.124 0.876 41 H 0.029 0.971 42 H 0.030 0.970 43 H 0.263 0.737 44 H 0.124 0.876 45 H 0.132 0.868 46 H 0.157 0.843 47 H 0.077 0.923 48 H 0.068 0.932 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.937 14.179 19.174 30.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.018 3.982 3 N -0.366 5.366 4 C -0.159 4.159 5 C -0.005 4.005 6 N -0.303 5.303 7 C 0.291 3.709 8 O -0.405 6.405 9 C 0.288 3.712 10 O -0.369 6.369 11 N -0.273 5.273 12 C 0.003 3.997 13 C -0.158 4.158 14 C -0.125 4.125 15 C -0.039 4.039 16 C 0.011 3.989 17 C -0.550 4.550 18 H 0.075 0.925 19 C -0.143 4.143 20 N -0.533 5.533 21 Si 0.723 3.277 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.202 1.202 25 C -0.126 4.126 26 C -0.139 4.139 27 C -0.067 4.067 28 C -0.157 4.157 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.155 0.845 33 H 0.152 0.848 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.101 0.899 37 H 0.106 0.894 38 H 0.255 0.745 39 H 0.135 0.865 40 H 0.142 0.858 41 H 0.048 0.952 42 H 0.048 0.952 43 H 0.072 0.928 44 H 0.141 0.859 45 H 0.149 0.851 46 H 0.173 0.827 47 H 0.096 0.904 48 H 0.086 0.914 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -18.185 13.939 18.828 29.656 hybrid contribution -0.089 0.196 0.514 0.557 sum -18.273 14.135 19.342 30.130 Atomic orbital electron populations 1.22625 0.96872 1.02723 1.01716 1.20831 0.91759 0.89586 0.96013 1.58891 1.67398 1.02601 1.07731 1.21945 0.95733 1.00903 0.97293 1.21612 0.93253 0.99829 0.85850 1.47902 1.40718 1.32724 1.08947 1.19915 0.80825 0.81068 0.89125 1.90754 1.54876 1.62173 1.32670 1.20202 0.79439 0.81766 0.89745 1.90295 1.53280 1.60358 1.32977 1.43070 1.47025 1.27240 1.09928 1.17562 1.03073 0.92876 0.86161 1.20739 1.03892 0.92370 0.98780 1.20902 0.99511 1.00206 0.91918 1.20778 0.92199 0.93051 0.97873 1.18361 0.95742 0.96611 0.88218 1.21019 0.90425 1.41680 1.01924 0.92482 1.25014 0.98677 0.95197 0.95460 1.69947 1.35683 1.41807 1.05836 0.86592 0.85347 0.78484 0.77229 1.20178 1.21259 1.20154 1.21016 0.98973 0.95564 0.97011 1.21133 1.00361 0.99688 0.92695 1.23293 0.93550 1.02260 0.87638 1.21930 0.96532 1.00426 0.96806 0.92686 0.92441 0.91984 0.84489 0.84804 0.91103 0.90736 0.89946 0.89400 0.74496 0.86498 0.85770 0.95249 0.95213 0.92781 0.85850 0.85072 0.82700 0.90443 0.91363 0.90693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.89 8.76 37.16 0.33 -0.56 16 2 C 0.11 0.65 0.82 -131.56 -0.11 0.54 16 3 N -0.84 -4.22 7.42 0.78 0.01 -4.22 16 4 C -0.12 -0.77 5.02 -26.61 -0.13 -0.90 16 5 C 0.12 0.99 6.17 -3.71 -0.02 0.96 16 6 N -0.57 -5.92 2.97 -173.31 -0.52 -6.44 16 7 C 0.51 6.37 7.75 -11.63 -0.09 6.28 16 8 O -0.53 -7.45 15.94 5.49 0.09 -7.36 16 9 C 0.51 6.81 7.59 -11.63 -0.09 6.72 16 10 O -0.49 -7.19 10.35 5.47 0.06 -7.13 16 11 N -0.63 -8.46 5.33 -10.30 -0.05 -8.52 16 12 C 0.10 1.54 6.38 -83.75 -0.53 1.01 16 13 C -0.14 -2.21 9.95 -39.38 -0.39 -2.60 16 14 C -0.11 -2.01 9.69 -39.61 -0.38 -2.39 16 15 C -0.04 -0.82 5.07 -104.58 -0.53 -1.35 16 16 C 0.05 1.20 5.10 -29.04 -0.15 1.06 16 17 C -0.51 -14.18 9.09 -34.44 -0.31 -14.50 16 18 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.89 -26.21 13.29 55.43 0.74 -25.48 16 21 Si 0.90 21.46 29.54 -169.99 -5.02 16.43 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 C -0.11 -2.10 9.69 -39.61 -0.38 -2.49 16 26 C -0.12 -2.10 8.69 -39.37 -0.34 -2.44 16 27 C 0.05 0.51 6.00 -3.71 -0.02 0.49 16 28 C -0.12 -0.89 5.05 -26.61 -0.13 -1.03 16 29 H 0.05 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.33 8.14 -51.92 -0.42 -0.09 16 32 H 0.34 1.47 9.00 -39.29 -0.35 1.12 16 33 H 0.34 1.31 8.98 -39.29 -0.35 0.95 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.08 0.68 7.74 -51.93 -0.40 0.28 16 37 H 0.09 0.82 7.03 -51.93 -0.36 0.45 16 38 H 0.42 4.79 8.31 -40.82 -0.34 4.45 16 39 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 40 H 0.12 2.23 8.06 -52.49 -0.42 1.81 16 41 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 42 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 43 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 44 H 0.12 2.36 8.06 -52.49 -0.42 1.94 16 45 H 0.13 2.22 6.01 -52.48 -0.32 1.90 16 46 H 0.16 1.81 3.73 -57.12 -0.21 1.59 16 47 H 0.08 0.75 7.74 -51.93 -0.40 0.35 16 48 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 49 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 394.33 15.07 5.94 5.94 Total: -1.00 -30.94 394.33 -9.51 -40.45 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -7.35 Total: 5.96 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: -3.40 Total: -9.66 kcal Atomic # 7 Polarization: -44.82 SS G_CDS: 0.17 Total: -44.65 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: 0.14 Total: -14.49 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -30.94 -9.51 -40.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000927797797.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.664 kcal (2) G-P(sol) polarization free energy of solvation -30.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds