Wall clock time and date at job start Wed Apr 1 2020 03:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46904 * 109.45914 * 2 1 4 4 C 1.53039 * 109.45857 * 119.97314 * 2 1 3 5 5 C 1.53190 * 109.31286 * 181.38674 * 4 2 1 6 6 N 1.46931 * 108.77766 * 305.36835 * 5 4 2 7 7 C 1.34777 * 120.62818 * 233.61117 * 6 5 4 8 8 O 1.21357 * 120.00372 * 356.34931 * 7 6 5 9 9 C 1.49354 * 119.99929 * 176.35279 * 7 6 5 10 10 O 1.21379 * 119.99886 * 7.08415 * 9 7 6 11 11 N 1.34769 * 120.00246 * 187.08779 * 9 7 6 12 12 C 1.39721 * 120.00350 * 185.16958 * 11 9 7 13 13 C 1.38936 * 120.07994 * 207.64250 * 12 11 9 14 14 C 1.38091 * 119.92128 * 179.72552 * 13 12 11 15 15 C 1.38295 * 120.08133 * 0.57363 * 14 13 12 16 16 C 1.50697 * 119.92543 * 179.72195 * 15 14 13 17 17 C 1.50692 * 109.47426 * 269.97591 * 16 15 14 18 18 H 1.08004 * 120.00279 * 0.02562 * 17 16 15 19 19 C 1.37880 * 120.00369 * 179.97438 * 17 16 15 20 20 N 1.31511 * 119.99489 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00077 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47012 * 60.00770 * 21 19 17 23 23 H 1.48502 * 109.47075 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47601 * 300.00342 * 21 19 17 25 25 C 1.38293 * 120.15038 * 359.69915 * 15 14 13 26 26 C 1.38103 * 120.07417 * 0.02562 * 25 15 14 27 27 C 1.46920 * 118.73932 * 53.60275 * 6 5 4 28 28 C 1.53042 * 109.46033 * 240.04060 * 2 1 3 29 29 H 1.08995 * 109.47509 * 300.02689 * 1 2 3 30 30 H 1.09003 * 109.47071 * 60.03077 * 1 2 3 31 31 H 1.09008 * 109.47092 * 180.02562 * 1 2 3 32 32 H 1.00897 * 110.99925 * 299.97378 * 3 2 1 33 33 H 1.00896 * 110.99747 * 63.92705 * 3 2 1 34 34 H 1.08993 * 109.49908 * 61.43582 * 4 2 1 35 35 H 1.08997 * 109.52368 * 301.35629 * 4 2 1 36 36 H 1.09007 * 109.58605 * 65.15008 * 5 4 2 37 37 H 1.08995 * 109.59074 * 185.57395 * 5 4 2 38 38 H 0.97000 * 120.00140 * 5.16939 * 11 9 7 39 39 H 1.07996 * 120.03146 * 359.97438 * 13 12 11 40 40 H 1.08001 * 119.96062 * 180.29463 * 14 13 12 41 41 H 1.09004 * 109.47195 * 29.98205 * 16 15 14 42 42 H 1.09000 * 109.46681 * 149.97378 * 16 15 14 43 43 H 0.97008 * 119.99947 * 179.97438 * 20 19 17 44 44 H 1.07991 * 119.96364 * 180.02562 * 25 15 14 45 45 H 1.08005 * 120.03645 * 179.97438 * 26 25 15 46 46 H 1.09005 * 109.59226 * 186.61012 * 27 6 5 47 47 H 1.09002 * 109.70598 * 66.25313 * 27 6 5 48 48 H 1.08998 * 109.49679 * 298.56526 * 28 2 1 49 49 H 1.09000 * 109.49693 * 58.66238 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0194 1.3851 0.0000 4 6 2.0398 -0.7209 1.2500 5 6 3.5713 -0.6887 1.2642 6 7 4.0679 -1.2487 -0.0001 7 6 4.9617 -2.2574 -0.0002 8 8 5.4142 -2.6674 1.0486 9 6 5.3956 -2.8707 -1.2911 10 8 5.0448 -2.3798 -2.3443 11 7 6.1765 -3.9690 -1.2866 12 6 6.6712 -4.4796 -2.4894 13 6 6.9599 -5.8337 -2.6049 14 6 7.4434 -6.3357 -3.7970 15 6 7.6514 -5.4904 -4.8715 16 6 8.1851 -6.0410 -6.1689 17 6 9.6909 -5.9853 -6.1567 18 1 10.2098 -5.5910 -5.2954 19 6 10.4064 -6.4386 -7.2446 20 7 9.7746 -6.9191 -8.2931 21 14 12.2730 -6.3689 -7.2297 22 1 12.7896 -7.1794 -6.0977 23 1 12.7989 -6.9127 -8.5076 24 1 12.7146 -4.9599 -7.0718 25 6 7.3705 -4.1410 -4.7584 26 6 6.8814 -3.6332 -3.5709 27 6 3.5714 -0.6884 -1.2643 28 6 2.0398 -0.7206 -1.2502 29 1 -0.3634 0.5142 0.8897 30 1 -0.3633 0.5134 -0.8903 31 1 -0.3634 -1.0277 0.0005 32 1 1.6961 1.8828 -0.8160 33 1 1.7494 1.8639 0.8461 34 1 1.6978 -1.7557 1.2381 35 1 1.6571 -0.2215 2.1401 36 1 3.9142 0.3408 1.3674 37 1 3.9416 -1.2847 2.0983 38 1 6.3951 -4.4052 -0.4482 39 1 6.8026 -6.4934 -1.7644 40 1 7.6635 -7.3891 -3.8889 41 1 7.8606 -7.0750 -6.2856 42 1 7.8061 -5.4454 -6.9994 43 1 10.2780 -7.2378 -9.0588 44 1 7.5337 -3.4837 -5.5996 45 1 6.6626 -2.5792 -3.4831 46 1 3.9417 -1.2842 -2.0986 47 1 3.9142 0.3409 -1.3698 48 1 1.6978 -1.7555 -1.2385 49 1 1.6572 -0.2205 -2.1399 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000927797797.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:11 Heat of formation + Delta-G solvation = -47.986198 kcal Electronic energy + Delta-G solvation = -29781.884302 eV Core-core repulsion = 25708.268163 eV Total energy + Delta-G solvation = -4073.616139 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.41012 -40.85405 -39.61135 -39.15434 -36.79570 -35.64754 -34.94153 -32.31935 -32.17916 -31.79992 -30.83071 -29.41114 -28.69707 -26.49281 -24.97480 -24.48504 -23.92859 -23.35075 -21.95246 -21.38068 -20.12692 -18.94567 -18.48812 -18.44598 -17.74774 -17.21877 -16.85353 -16.83108 -16.60288 -16.01992 -15.92975 -15.72481 -15.35935 -15.22086 -14.78517 -14.65703 -14.52342 -14.46081 -14.23289 -14.15306 -13.87317 -13.61617 -13.26927 -13.20236 -13.14800 -12.81046 -12.77017 -12.60224 -12.53194 -12.40586 -12.14453 -12.03432 -11.73553 -11.66437 -11.48659 -11.38338 -11.14938 -10.58133 -10.10701 -9.94981 -9.75967 -9.41097 -8.93054 -8.17072 -6.31014 -0.06005 0.55254 0.69780 1.15638 1.41516 1.43896 1.52079 1.99583 2.37212 2.41441 2.97574 3.11182 3.12727 3.56559 3.70316 3.81962 4.01663 4.05980 4.11881 4.14271 4.34696 4.39969 4.41021 4.51225 4.55881 4.61866 4.64627 4.67944 4.77830 4.81889 4.95447 4.99413 5.03918 5.08976 5.14012 5.23209 5.23773 5.31445 5.35014 5.37082 5.39955 5.49077 5.61462 5.77055 5.96052 6.07791 6.09332 6.17634 6.24103 6.32719 6.63414 6.68601 6.81275 6.81526 7.37232 8.90895 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.024305 B = 0.001932 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.734007 B =14488.063543 C =14873.544621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.116 3.884 3 N -0.841 5.841 4 C -0.116 4.116 5 C 0.115 3.885 6 N -0.563 5.563 7 C 0.509 3.491 8 O -0.546 6.546 9 C 0.506 3.494 10 O -0.503 6.503 11 N -0.623 5.623 12 C 0.111 3.889 13 C -0.124 4.124 14 C -0.111 4.111 15 C -0.070 4.070 16 C 0.057 3.943 17 C -0.527 4.527 18 H 0.055 0.945 19 C 0.004 3.996 20 N -0.930 5.930 21 Si 0.964 3.036 22 H -0.267 1.267 23 H -0.281 1.281 24 H -0.269 1.269 25 C -0.116 4.116 26 C -0.121 4.121 27 C 0.055 3.945 28 C -0.116 4.116 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.347 0.653 33 H 0.348 0.652 34 H 0.064 0.936 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.430 0.570 39 H 0.157 0.843 40 H 0.128 0.872 41 H 0.007 0.993 42 H 0.002 0.998 43 H 0.265 0.735 44 H 0.116 0.884 45 H 0.138 0.862 46 H 0.139 0.861 47 H 0.079 0.921 48 H 0.059 0.941 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.594 15.356 21.739 33.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.023 3.977 3 N -0.372 5.372 4 C -0.154 4.154 5 C -0.007 4.007 6 N -0.294 5.294 7 C 0.291 3.709 8 O -0.425 6.425 9 C 0.290 3.710 10 O -0.381 6.381 11 N -0.269 5.269 12 C 0.018 3.982 13 C -0.144 4.144 14 C -0.130 4.130 15 C -0.071 4.071 16 C 0.020 3.980 17 C -0.565 4.565 18 H 0.074 0.926 19 C -0.195 4.195 20 N -0.569 5.569 21 Si 0.789 3.211 22 H -0.192 1.192 23 H -0.207 1.207 24 H -0.194 1.194 25 C -0.134 4.134 26 C -0.141 4.141 27 C -0.065 4.065 28 C -0.155 4.155 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.161 0.839 33 H 0.162 0.838 34 H 0.083 0.917 35 H 0.113 0.887 36 H 0.107 0.893 37 H 0.098 0.902 38 H 0.270 0.730 39 H 0.175 0.825 40 H 0.146 0.854 41 H 0.026 0.974 42 H 0.021 0.979 43 H 0.074 0.926 44 H 0.134 0.866 45 H 0.156 0.844 46 H 0.155 0.845 47 H 0.098 0.902 48 H 0.078 0.922 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -18.874 15.146 21.421 32.319 hybrid contribution -0.009 -0.072 -0.217 0.229 sum -18.882 15.075 21.204 32.146 Atomic orbital electron populations 1.22558 0.95816 1.02606 1.02410 1.20717 0.92421 0.89836 0.94699 1.58851 1.67551 1.02282 1.08550 1.21935 0.93985 1.00978 0.98524 1.21766 0.94717 0.99701 0.84469 1.48041 1.39590 1.31707 1.10084 1.19696 0.81330 0.81644 0.88265 1.90749 1.55840 1.63059 1.32848 1.20487 0.78996 0.81405 0.90106 1.90341 1.53501 1.60573 1.33652 1.43009 1.46952 1.27413 1.09480 1.17618 1.01251 0.92847 0.86533 1.21001 1.01955 0.92751 0.98715 1.20970 0.99631 1.00152 0.92233 1.20469 0.95306 0.94241 0.97089 1.18097 0.95043 0.94990 0.89896 1.21355 0.91828 1.41429 1.01929 0.92644 1.25921 1.03791 0.94723 0.95017 1.70074 1.37634 1.42716 1.06523 0.85511 0.79234 0.78796 0.77587 1.19172 1.20663 1.19449 1.20953 0.99714 0.94891 0.97873 1.21163 1.00243 1.00258 0.92459 1.23197 0.95053 1.01670 0.86628 1.21909 0.94827 1.00441 0.98320 0.91648 0.92125 0.92502 0.83886 0.83769 0.91721 0.88656 0.89333 0.90163 0.73049 0.82511 0.85422 0.97433 0.97923 0.92607 0.86561 0.84427 0.84506 0.90236 0.92182 0.89820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.29 8.76 71.98 0.63 -0.66 16 2 C 0.12 1.10 0.82 3.55 0.00 1.10 16 3 N -0.84 -6.40 7.42 -151.45 -1.12 -7.53 16 4 C -0.12 -1.21 5.02 30.67 0.15 -1.06 16 5 C 0.11 1.73 6.17 86.36 0.53 2.26 16 6 N -0.56 -10.90 2.97 -820.58 -2.44 -13.34 16 7 C 0.51 12.09 7.75 87.24 0.68 12.77 16 8 O -0.55 -14.64 15.94 -3.27 -0.05 -14.69 16 9 C 0.51 12.98 7.59 87.24 0.66 13.64 16 10 O -0.50 -14.28 10.35 -3.34 -0.03 -14.32 16 11 N -0.62 -15.54 5.33 -304.84 -1.63 -17.16 16 12 C 0.11 3.39 6.38 38.22 0.24 3.63 16 13 C -0.12 -3.72 9.95 22.40 0.22 -3.50 16 14 C -0.11 -4.15 9.69 22.25 0.22 -3.94 16 15 C -0.07 -3.10 5.07 -19.84 -0.10 -3.21 16 16 C 0.06 3.03 5.10 29.10 0.15 3.18 16 17 C -0.53 -30.08 9.09 25.60 0.23 -29.85 16 18 H 0.06 3.10 7.74 -2.91 -0.02 3.08 16 19 C 0.00 0.21 5.46 84.66 0.46 0.67 16 20 N -0.93 -56.07 13.29 21.45 0.28 -55.78 16 21 Si 0.96 44.38 29.54 68.60 2.03 46.40 16 22 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 23 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 24 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 25 C -0.12 -4.67 9.69 22.25 0.22 -4.45 16 26 C -0.12 -4.23 8.69 22.40 0.19 -4.03 16 27 C 0.05 0.99 6.00 86.37 0.52 1.51 16 28 C -0.12 -1.57 5.05 30.67 0.16 -1.42 16 29 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 32 H 0.35 2.16 9.00 -89.70 -0.81 1.35 16 33 H 0.35 1.69 8.98 -89.70 -0.81 0.88 16 34 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.09 1.26 7.74 -2.38 -0.02 1.24 16 37 H 0.08 1.37 7.03 -2.39 -0.02 1.35 16 38 H 0.43 8.77 8.31 -92.71 -0.77 8.00 16 39 H 0.16 3.44 8.06 -2.91 -0.02 3.42 16 40 H 0.13 4.59 8.06 -2.91 -0.02 4.57 16 41 H 0.01 0.42 8.08 -2.39 -0.02 0.40 16 42 H 0.00 0.14 8.08 -2.39 -0.02 0.12 16 43 H 0.27 15.04 8.31 -92.70 -0.77 14.27 16 44 H 0.12 4.70 8.06 -2.92 -0.02 4.68 16 45 H 0.14 4.59 6.01 -2.91 -0.02 4.58 16 46 H 0.14 3.10 3.73 -84.57 -0.32 2.78 16 47 H 0.08 1.42 7.74 -2.39 -0.02 1.41 16 48 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 49 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -67.97 394.33 0.52 -67.45 By element: Atomic # 1 Polarization: 23.99 SS G_CDS: -1.69 Total: 22.30 kcal Atomic # 6 Polarization: -18.51 SS G_CDS: 5.17 Total: -13.34 kcal Atomic # 7 Polarization: -88.91 SS G_CDS: -4.90 Total: -93.81 kcal Atomic # 8 Polarization: -28.92 SS G_CDS: -0.09 Total: -29.01 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.40 kcal Total: -67.97 0.52 -67.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000927797797.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.466 kcal (2) G-P(sol) polarization free energy of solvation -67.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds