Wall clock time and date at job start Wed Apr 1 2020 06:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35240 * 126.07576 * 2 1 4 4 C 1.40401 * 107.87113 * 180.16127 * 3 2 1 5 5 N 1.40191 * 125.97598 * 179.82792 * 4 3 2 6 6 C 1.34779 * 119.99820 * 359.71172 * 5 4 3 7 7 O 1.21598 * 119.99833 * 359.97438 * 6 5 4 8 8 N 1.34780 * 120.00255 * 179.72398 * 6 5 4 9 9 C 1.46499 * 120.00290 * 180.27155 * 8 6 5 10 10 C 1.53000 * 109.47096 * 180.02562 * 9 8 6 11 11 N 1.46902 * 109.46987 * 180.02562 * 10 9 8 12 12 C 1.46906 * 110.99590 * 67.98059 * 11 10 9 13 13 C 1.46896 * 110.99919 * 191.92974 * 11 10 9 14 14 C 1.53008 * 109.46960 * 77.06482 * 13 11 10 15 15 F 1.39899 * 109.46610 * 294.26051 * 14 13 11 16 16 F 1.39899 * 109.46627 * 54.25885 * 14 13 11 17 17 N 1.31208 * 108.05187 * 359.56069 * 4 3 2 18 18 N 1.34966 * 126.06799 * 179.67994 * 2 1 3 19 19 C 1.46503 * 125.97836 * 359.97438 * 18 2 1 20 20 C 1.50701 * 109.46971 * 270.00061 * 19 18 2 21 21 H 1.07999 * 120.00363 * 0.02562 * 20 19 18 22 22 C 1.37879 * 119.99983 * 179.97438 * 20 19 18 23 23 N 1.31516 * 120.00004 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00146 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.46815 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47030 * 120.00415 * 24 22 20 27 27 H 1.48498 * 109.46844 * 240.00223 * 24 22 20 28 28 H 1.09008 * 109.46994 * 270.32156 * 1 2 3 29 29 H 1.08998 * 109.46896 * 30.31974 * 1 2 3 30 30 H 1.08999 * 109.47203 * 150.32455 * 1 2 3 31 31 H 1.08008 * 126.06440 * 359.97438 * 3 2 1 32 32 H 0.96996 * 120.00325 * 179.71043 * 5 4 3 33 33 H 0.96996 * 119.99242 * 0.27438 * 8 6 5 34 34 H 1.08993 * 109.47351 * 300.00785 * 9 8 6 35 35 H 1.09004 * 109.46345 * 60.00488 * 9 8 6 36 36 H 1.08998 * 109.46726 * 300.00179 * 10 9 8 37 37 H 1.08997 * 109.47032 * 60.00252 * 10 9 8 38 38 H 1.08990 * 109.47386 * 64.54839 * 12 11 10 39 39 H 1.09007 * 109.46746 * 184.54641 * 12 11 10 40 40 H 1.08997 * 109.47180 * 304.53991 * 12 11 10 41 41 H 1.09003 * 109.47311 * 197.06333 * 13 11 10 42 42 H 1.08998 * 109.47383 * 317.06806 * 13 11 10 43 43 H 1.08997 * 109.47264 * 174.26131 * 14 13 11 44 44 H 1.08998 * 109.47238 * 30.00099 * 19 18 2 45 45 H 1.08994 * 109.47512 * 150.00162 * 19 18 2 46 46 H 0.96994 * 120.00093 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3034 1.0931 0.0000 4 6 3.6371 0.6544 -0.0038 5 7 4.7739 1.4749 -0.0084 6 6 4.6371 2.8157 -0.0154 7 8 3.5278 3.3137 -0.0182 8 7 5.7299 3.6046 -0.0143 9 6 5.5813 5.0620 -0.0159 10 6 6.9646 5.7157 -0.0147 11 7 6.8156 7.1772 -0.0158 12 6 6.2492 7.6494 1.2548 13 6 8.0973 7.8368 -0.2982 14 6 8.3980 7.7471 -1.7958 15 9 8.6007 6.4093 -2.1513 16 9 7.3182 8.2637 -2.5198 17 7 3.6336 -0.6576 0.0036 18 7 2.3016 -1.0909 0.0061 19 6 1.8500 -2.4846 0.0144 20 6 1.6957 -2.9541 1.4381 21 1 1.9119 -2.2816 2.2550 22 6 1.2774 -4.2420 1.6977 23 7 1.0136 -5.0609 0.7030 24 14 1.0854 -4.8238 3.4625 25 1 1.4425 -3.7198 4.3892 26 1 -0.3224 -5.2331 3.6983 27 1 1.9842 -5.9813 3.7026 28 1 -0.3633 0.0058 1.0277 29 1 -0.3633 0.8871 -0.5188 30 1 -0.3633 -0.8929 -0.5088 31 1 1.9721 2.1211 -0.0004 32 1 5.6587 1.0776 -0.0065 33 1 6.6148 3.2072 -0.0124 34 1 5.0348 5.3705 -0.9070 35 1 5.0318 5.3721 0.8729 36 1 7.5115 5.4072 0.8762 37 1 7.5138 5.4055 -0.9037 38 1 6.9471 7.4376 2.0647 39 1 6.0743 8.7238 1.1976 40 1 5.3059 7.1374 1.4447 41 1 8.0403 8.8841 -0.0012 42 1 8.8914 7.3430 0.2619 43 1 9.2955 8.3230 -2.0213 44 1 0.8912 -2.5589 -0.4986 45 1 2.5844 -3.1076 -0.4960 46 1 0.7197 -5.9670 0.8857 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930634413.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:23:53 Heat of formation + Delta-G solvation = -41.278830 kcal Electronic energy + Delta-G solvation = -29506.414543 eV Core-core repulsion = 24911.152479 eV Total energy + Delta-G solvation = -4595.262065 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.172 amu Computer time = 14.26 seconds Orbital eigenvalues (eV) -49.31544 -47.30259 -40.71641 -39.63259 -38.24446 -35.11623 -34.56334 -33.32727 -31.49722 -30.95739 -30.57122 -29.02372 -26.64024 -26.28811 -25.75752 -23.51364 -22.82412 -21.66603 -21.44768 -19.82588 -19.53364 -18.10665 -17.86142 -17.60111 -17.06926 -16.65906 -16.38626 -16.00468 -15.61524 -15.31192 -15.17545 -14.88025 -14.47131 -14.39105 -14.22953 -13.99374 -13.90738 -13.65772 -13.60461 -12.96203 -12.94621 -12.72825 -12.45232 -12.35819 -12.23575 -12.15895 -12.03479 -11.78260 -11.61390 -11.35785 -11.06935 -10.96239 -10.82649 -10.38586 -10.23032 -9.97783 -9.62238 -9.49055 -9.17531 -9.02591 -8.62370 -7.86295 -7.35427 -6.22943 -4.30219 2.33145 2.69936 3.11675 3.15710 3.21615 3.29414 3.35437 3.39781 3.71920 3.78315 3.88938 3.97031 4.28776 4.36516 4.41913 4.47071 4.63416 4.81279 4.82842 4.97090 5.03320 5.10680 5.15885 5.41800 5.47420 5.61417 5.69741 5.76452 5.97017 6.16511 6.21469 6.26824 6.28435 6.40912 6.50918 6.64377 6.67398 6.99245 7.09624 7.17982 7.57561 7.70361 7.92224 7.99330 8.11776 8.64143 8.71984 8.79901 9.35880 10.84243 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.024142 B = 0.001709 C = 0.001701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.544371 B =16380.317675 C =16453.722825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.091 3.909 3 C -0.289 4.289 4 C 0.283 3.717 5 N -0.644 5.644 6 C 0.714 3.286 7 O -0.564 6.564 8 N -0.745 5.745 9 C 0.146 3.854 10 C 0.025 3.975 11 N -0.532 5.532 12 C 0.019 3.981 13 C 0.002 3.998 14 C 0.268 3.732 15 F -0.204 7.204 16 F -0.194 7.194 17 N -0.325 5.325 18 N -0.319 5.319 19 C 0.258 3.742 20 C -0.533 4.533 21 H 0.065 0.935 22 C 0.064 3.936 23 N -0.892 5.892 24 Si 0.906 3.094 25 H -0.272 1.272 26 H -0.281 1.281 27 H -0.281 1.281 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.160 0.840 32 H 0.406 0.594 33 H 0.396 0.604 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.044 0.956 37 H 0.101 0.899 38 H 0.030 0.970 39 H 0.073 0.927 40 H 0.080 0.920 41 H 0.106 0.894 42 H 0.069 0.931 43 H 0.112 0.888 44 H 0.054 0.946 45 H 0.052 0.948 46 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.696 26.979 -2.087 31.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.041 4.041 3 C -0.320 4.320 4 C 0.029 3.971 5 N -0.294 5.294 6 C 0.413 3.587 7 O -0.439 6.439 8 N -0.402 5.402 9 C 0.021 3.979 10 C -0.103 4.103 11 N -0.257 5.257 12 C -0.129 4.129 13 C -0.127 4.127 14 C 0.214 3.786 15 F -0.186 7.186 16 F -0.175 7.175 17 N -0.155 5.155 18 N -0.101 5.101 19 C 0.141 3.859 20 C -0.572 4.572 21 H 0.083 0.917 22 C -0.139 4.139 23 N -0.530 5.530 24 Si 0.733 3.267 25 H -0.196 1.196 26 H -0.207 1.207 27 H -0.207 1.207 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.178 0.822 32 H 0.240 0.760 33 H 0.229 0.771 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.062 0.938 37 H 0.119 0.881 38 H 0.049 0.951 39 H 0.092 0.908 40 H 0.099 0.901 41 H 0.124 0.876 42 H 0.087 0.913 43 H 0.130 0.870 44 H 0.072 0.928 45 H 0.070 0.930 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 14.934 26.215 -2.526 30.276 hybrid contribution 0.971 -0.487 1.566 1.906 sum 15.905 25.728 -0.960 30.263 Atomic orbital electron populations 1.20327 0.87936 1.02792 1.03110 1.21056 0.94879 0.87171 1.00986 1.21238 0.89704 0.99826 1.21241 1.18652 0.86556 0.89241 1.02632 1.41373 1.07592 1.03701 1.76710 1.15559 0.84644 0.80371 0.78107 1.90881 1.23474 1.73464 1.56103 1.44875 1.07639 1.06442 1.81237 1.21046 0.96171 0.77353 1.03296 1.22686 0.97524 0.87064 1.03047 1.61751 1.23903 1.05353 1.34658 1.22545 1.00276 1.01641 0.88415 1.23261 0.92823 1.02466 0.94187 1.21983 0.88516 0.77675 0.90415 1.92901 1.95299 1.37165 1.93186 1.93019 1.58641 1.86315 1.79532 1.77241 0.99939 1.08329 1.30005 1.48948 1.00893 1.07713 1.52550 1.19675 0.95957 0.71421 0.98877 1.21371 1.46472 0.97929 0.91432 0.91716 1.24933 0.94752 0.96082 0.98105 1.69929 1.45114 1.06907 1.31070 0.86307 0.77842 0.78748 0.83822 1.19603 1.20656 1.20702 0.90478 0.90824 0.90907 0.82227 0.75968 0.77087 0.90423 0.91446 0.93792 0.88106 0.95111 0.90809 0.90110 0.87561 0.91251 0.87032 0.92802 0.93046 0.92349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.47 10.11 36.01 0.36 -1.11 16 2 C 0.09 1.97 6.92 -82.28 -0.57 1.40 16 3 C -0.29 -6.19 9.52 -39.84 -0.38 -6.57 16 4 C 0.28 5.95 8.11 -154.37 -1.25 4.70 16 5 N -0.64 -10.39 5.46 -15.50 -0.08 -10.47 16 6 C 0.71 11.01 8.53 -86.91 -0.74 10.27 16 7 O -0.56 -10.73 13.47 5.28 0.07 -10.66 16 8 N -0.74 -7.83 5.56 -65.22 -0.36 -8.20 16 9 C 0.15 1.41 5.65 -4.04 -0.02 1.39 16 10 C 0.02 0.17 4.88 -3.82 -0.02 0.15 16 11 N -0.53 -3.49 4.50 -242.91 -1.09 -4.58 16 12 C 0.02 0.10 9.32 60.07 0.56 0.66 16 13 C 0.00 0.01 5.38 -3.82 -0.02 -0.01 16 14 C 0.27 1.33 5.59 37.16 0.21 1.54 16 15 F -0.20 -1.50 14.65 2.25 0.03 -1.47 16 16 F -0.19 -1.63 17.15 2.25 0.04 -1.59 16 17 N -0.32 -7.66 12.59 31.44 0.40 -7.27 16 18 N -0.32 -7.73 3.59 -58.33 -0.21 -7.94 16 19 C 0.26 6.74 5.99 -5.19 -0.03 6.71 16 20 C -0.53 -14.89 9.39 -34.44 -0.32 -15.21 16 21 H 0.06 1.87 7.81 -52.49 -0.41 1.46 16 22 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 23 N -0.89 -25.29 13.29 55.43 0.74 -24.55 16 24 Si 0.91 21.31 29.54 -169.99 -5.02 16.29 16 25 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 28 H 0.08 1.31 8.14 -51.92 -0.42 0.89 16 29 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 30 H 0.07 1.28 7.07 -51.93 -0.37 0.92 16 31 H 0.16 3.37 5.91 -52.48 -0.31 3.06 16 32 H 0.41 5.20 8.84 -40.82 -0.36 4.84 16 33 H 0.40 2.94 8.49 -40.82 -0.35 2.59 16 34 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.07 0.69 6.53 -51.93 -0.34 0.35 16 36 H 0.04 0.26 8.10 -51.93 -0.42 -0.16 16 37 H 0.10 0.75 5.30 -51.93 -0.28 0.47 16 38 H 0.03 0.14 8.14 -51.93 -0.42 -0.28 16 39 H 0.07 0.33 8.08 -51.93 -0.42 -0.09 16 40 H 0.08 0.51 6.36 -51.93 -0.33 0.18 16 41 H 0.11 0.24 7.87 -51.93 -0.41 -0.17 16 42 H 0.07 0.19 7.98 -51.93 -0.41 -0.22 16 43 H 0.11 0.14 8.14 -51.93 -0.42 -0.28 16 44 H 0.05 1.39 7.04 -51.93 -0.37 1.02 16 45 H 0.05 1.42 8.14 -51.93 -0.42 1.00 16 46 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 388.49 15.07 5.85 5.85 Total: -1.00 -35.31 388.49 -8.40 -43.71 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -6.44 Total: 5.29 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: -2.32 Total: 5.59 kcal Atomic # 7 Polarization: -62.40 SS G_CDS: -0.62 Total: -63.02 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.07 Total: -10.66 kcal Atomic # 9 Polarization: -3.13 SS G_CDS: 0.07 Total: -3.06 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.31 -8.40 -43.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930634413.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.432 kcal (2) G-P(sol) polarization free energy of solvation -35.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 14.26 seconds