Wall clock time and date at job start Wed Apr 1 2020 06:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35240 * 126.07576 * 2 1 4 4 C 1.40401 * 107.87113 * 180.16127 * 3 2 1 5 5 N 1.40191 * 125.97598 * 179.82792 * 4 3 2 6 6 C 1.34779 * 119.99820 * 359.71172 * 5 4 3 7 7 O 1.21598 * 119.99833 * 359.97438 * 6 5 4 8 8 N 1.34780 * 120.00255 * 179.72398 * 6 5 4 9 9 C 1.46499 * 120.00290 * 180.27155 * 8 6 5 10 10 C 1.53000 * 109.47096 * 180.02562 * 9 8 6 11 11 N 1.46902 * 109.46987 * 180.02562 * 10 9 8 12 12 C 1.46906 * 110.99590 * 67.98059 * 11 10 9 13 13 C 1.46896 * 110.99919 * 191.92974 * 11 10 9 14 14 C 1.53008 * 109.46960 * 77.06482 * 13 11 10 15 15 F 1.39899 * 109.46610 * 294.26051 * 14 13 11 16 16 F 1.39899 * 109.46627 * 54.25885 * 14 13 11 17 17 N 1.31208 * 108.05187 * 359.56069 * 4 3 2 18 18 N 1.34966 * 126.06799 * 179.67994 * 2 1 3 19 19 C 1.46503 * 125.97836 * 359.97438 * 18 2 1 20 20 C 1.50701 * 109.46971 * 270.00061 * 19 18 2 21 21 H 1.07999 * 120.00363 * 0.02562 * 20 19 18 22 22 C 1.37879 * 119.99983 * 179.97438 * 20 19 18 23 23 N 1.31516 * 120.00004 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00146 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.46815 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47030 * 120.00415 * 24 22 20 27 27 H 1.48498 * 109.46844 * 240.00223 * 24 22 20 28 28 H 1.09008 * 109.46994 * 270.32156 * 1 2 3 29 29 H 1.08998 * 109.46896 * 30.31974 * 1 2 3 30 30 H 1.08999 * 109.47203 * 150.32455 * 1 2 3 31 31 H 1.08008 * 126.06440 * 359.97438 * 3 2 1 32 32 H 0.96996 * 120.00325 * 179.71043 * 5 4 3 33 33 H 0.96996 * 119.99242 * 0.27438 * 8 6 5 34 34 H 1.08993 * 109.47351 * 300.00785 * 9 8 6 35 35 H 1.09004 * 109.46345 * 60.00488 * 9 8 6 36 36 H 1.08998 * 109.46726 * 300.00179 * 10 9 8 37 37 H 1.08997 * 109.47032 * 60.00252 * 10 9 8 38 38 H 1.08990 * 109.47386 * 64.54839 * 12 11 10 39 39 H 1.09007 * 109.46746 * 184.54641 * 12 11 10 40 40 H 1.08997 * 109.47180 * 304.53991 * 12 11 10 41 41 H 1.09003 * 109.47311 * 197.06333 * 13 11 10 42 42 H 1.08998 * 109.47383 * 317.06806 * 13 11 10 43 43 H 1.08997 * 109.47264 * 174.26131 * 14 13 11 44 44 H 1.08998 * 109.47238 * 30.00099 * 19 18 2 45 45 H 1.08994 * 109.47512 * 150.00162 * 19 18 2 46 46 H 0.96994 * 120.00093 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3034 1.0931 0.0000 4 6 3.6371 0.6544 -0.0038 5 7 4.7739 1.4749 -0.0084 6 6 4.6371 2.8157 -0.0154 7 8 3.5278 3.3137 -0.0182 8 7 5.7299 3.6046 -0.0143 9 6 5.5813 5.0620 -0.0159 10 6 6.9646 5.7157 -0.0147 11 7 6.8156 7.1772 -0.0158 12 6 6.2492 7.6494 1.2548 13 6 8.0973 7.8368 -0.2982 14 6 8.3980 7.7471 -1.7958 15 9 8.6007 6.4093 -2.1513 16 9 7.3182 8.2637 -2.5198 17 7 3.6336 -0.6576 0.0036 18 7 2.3016 -1.0909 0.0061 19 6 1.8500 -2.4846 0.0144 20 6 1.6957 -2.9541 1.4381 21 1 1.9119 -2.2816 2.2550 22 6 1.2774 -4.2420 1.6977 23 7 1.0136 -5.0609 0.7030 24 14 1.0854 -4.8238 3.4625 25 1 1.4425 -3.7198 4.3892 26 1 -0.3224 -5.2331 3.6983 27 1 1.9842 -5.9813 3.7026 28 1 -0.3633 0.0058 1.0277 29 1 -0.3633 0.8871 -0.5188 30 1 -0.3633 -0.8929 -0.5088 31 1 1.9721 2.1211 -0.0004 32 1 5.6587 1.0776 -0.0065 33 1 6.6148 3.2072 -0.0124 34 1 5.0348 5.3705 -0.9070 35 1 5.0318 5.3721 0.8729 36 1 7.5115 5.4072 0.8762 37 1 7.5138 5.4055 -0.9037 38 1 6.9471 7.4376 2.0647 39 1 6.0743 8.7238 1.1976 40 1 5.3059 7.1374 1.4447 41 1 8.0403 8.8841 -0.0012 42 1 8.8914 7.3430 0.2619 43 1 9.2955 8.3230 -2.0213 44 1 0.8912 -2.5589 -0.4986 45 1 2.5844 -3.1076 -0.4960 46 1 0.7197 -5.9670 0.8857 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930634413.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:23:36 Heat of formation + Delta-G solvation = -66.806707 kcal Electronic energy + Delta-G solvation = -29507.521515 eV Core-core repulsion = 24911.152479 eV Total energy + Delta-G solvation = -4596.369036 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.172 amu Computer time = 11.27 seconds Orbital eigenvalues (eV) -49.76873 -47.79014 -42.31006 -40.97465 -38.81146 -36.44276 -35.78522 -35.27900 -33.05693 -32.61543 -31.30623 -29.71393 -28.46838 -27.85970 -26.42587 -25.02756 -23.86023 -22.71277 -22.22023 -21.30283 -21.07913 -19.10137 -18.76521 -18.50128 -18.15430 -17.87050 -17.45309 -17.16248 -16.97738 -16.41735 -16.24987 -15.87657 -15.82790 -15.61095 -15.37916 -14.94171 -14.75893 -14.54668 -14.36563 -14.25863 -14.15338 -13.79436 -13.69289 -13.51482 -13.34745 -13.16183 -13.12846 -12.86249 -12.81709 -12.67170 -12.54571 -12.38058 -12.25710 -12.07149 -11.58586 -11.42608 -11.34873 -11.17441 -10.73045 -10.22781 -9.55864 -9.43953 -9.07559 -8.31923 -6.49581 1.01450 1.08574 1.37181 1.38673 1.51580 1.65981 2.03660 2.35218 2.38145 2.72042 2.97366 3.06658 3.25552 3.51357 3.68745 3.82448 3.88137 4.02144 4.10937 4.17652 4.39737 4.44444 4.49524 4.53760 4.64131 4.66376 4.73079 4.76558 4.87689 4.90535 4.92464 4.99943 5.02165 5.09632 5.13943 5.21435 5.41323 5.54892 5.81882 5.84775 5.89154 5.91124 5.97411 6.27931 6.62383 6.74072 7.12668 7.21240 7.40597 8.74018 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.024142 B = 0.001709 C = 0.001701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.544371 B =16380.317675 C =16453.722825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.087 3.913 3 C -0.299 4.299 4 C 0.292 3.708 5 N -0.635 5.635 6 C 0.712 3.288 7 O -0.601 6.601 8 N -0.720 5.720 9 C 0.148 3.852 10 C 0.036 3.964 11 N -0.554 5.554 12 C 0.020 3.980 13 C 0.003 3.997 14 C 0.255 3.745 15 F -0.220 7.220 16 F -0.218 7.218 17 N -0.359 5.359 18 N -0.343 5.343 19 C 0.275 3.725 20 C -0.551 4.551 21 H 0.049 0.951 22 C 0.022 3.978 23 N -0.918 5.918 24 Si 0.972 3.028 25 H -0.274 1.274 26 H -0.267 1.267 27 H -0.274 1.274 28 H 0.084 0.916 29 H 0.105 0.895 30 H 0.069 0.931 31 H 0.165 0.835 32 H 0.422 0.578 33 H 0.414 0.586 34 H 0.056 0.944 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.099 0.901 38 H 0.042 0.958 39 H 0.083 0.917 40 H 0.065 0.935 41 H 0.126 0.874 42 H 0.088 0.912 43 H 0.154 0.846 44 H 0.053 0.947 45 H 0.025 0.975 46 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.908 28.446 -0.920 33.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.043 4.043 3 C -0.330 4.330 4 C 0.037 3.963 5 N -0.287 5.287 6 C 0.411 3.589 7 O -0.478 6.478 8 N -0.378 5.378 9 C 0.024 3.976 10 C -0.092 4.092 11 N -0.279 5.279 12 C -0.127 4.127 13 C -0.125 4.125 14 C 0.202 3.798 15 F -0.202 7.202 16 F -0.199 7.199 17 N -0.190 5.190 18 N -0.126 5.126 19 C 0.156 3.844 20 C -0.589 4.589 21 H 0.067 0.933 22 C -0.179 4.179 23 N -0.556 5.556 24 Si 0.796 3.204 25 H -0.199 1.199 26 H -0.192 1.192 27 H -0.200 1.200 28 H 0.102 0.898 29 H 0.123 0.877 30 H 0.088 0.912 31 H 0.182 0.818 32 H 0.259 0.741 33 H 0.251 0.749 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.117 0.883 38 H 0.060 0.940 39 H 0.102 0.898 40 H 0.083 0.917 41 H 0.144 0.856 42 H 0.106 0.894 43 H 0.171 0.829 44 H 0.070 0.930 45 H 0.043 0.957 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 16.213 27.714 -1.369 32.137 hybrid contribution 0.666 -0.796 1.153 1.552 sum 16.880 26.917 -0.216 31.773 Atomic orbital electron populations 1.20466 0.85336 1.04183 1.03958 1.21733 0.96660 0.86437 0.99482 1.21400 0.90036 0.99862 1.21703 1.18934 0.88040 0.88912 1.00408 1.41341 1.07123 1.03709 1.76497 1.15743 0.85208 0.80124 0.77810 1.90849 1.25307 1.73951 1.57717 1.44705 1.07281 1.06518 1.79269 1.21093 0.98027 0.76503 1.01999 1.22533 0.95350 0.87624 1.03668 1.61707 1.25833 1.04965 1.35393 1.22528 0.99790 1.02003 0.88378 1.23381 0.91994 1.03575 0.93589 1.22624 0.89236 0.77193 0.90767 1.92863 1.95348 1.38601 1.93385 1.92968 1.60136 1.86596 1.80240 1.77163 1.00055 1.09655 1.32117 1.48761 1.01654 1.07474 1.54667 1.19255 0.94949 0.72409 0.97806 1.21463 1.47372 0.98359 0.91748 0.93279 1.25742 0.93986 0.95899 1.02290 1.70008 1.45177 1.07388 1.33068 0.85293 0.78467 0.78058 0.78550 1.19881 1.19194 1.19959 0.89778 0.87668 0.91207 0.81768 0.74072 0.74885 0.92590 0.91931 0.92170 0.88336 0.93977 0.89848 0.91652 0.85564 0.89440 0.82950 0.92970 0.95716 0.91746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.82 10.11 71.24 0.72 -2.10 16 2 C 0.09 3.82 6.92 41.39 0.29 4.10 16 3 C -0.30 -12.84 9.52 22.10 0.21 -12.63 16 4 C 0.29 12.36 8.11 133.31 1.08 13.44 16 5 N -0.63 -20.13 5.46 -321.22 -1.75 -21.88 16 6 C 0.71 21.50 8.53 179.05 1.53 23.02 16 7 O -0.60 -22.80 13.47 -4.02 -0.05 -22.85 16 8 N -0.72 -14.27 5.56 -478.52 -2.66 -16.93 16 9 C 0.15 2.76 5.65 86.38 0.49 3.25 16 10 C 0.04 0.45 4.88 86.30 0.42 0.87 16 11 N -0.55 -6.32 4.50 -922.44 -4.15 -10.47 16 12 C 0.02 0.19 9.32 127.69 1.19 1.38 16 13 C 0.00 0.02 5.38 86.31 0.46 0.48 16 14 C 0.26 2.01 5.59 71.98 0.40 2.42 16 15 F -0.22 -2.92 14.65 44.97 0.66 -2.26 16 16 F -0.22 -3.47 17.15 44.97 0.77 -2.70 16 17 N -0.36 -17.31 12.59 -54.44 -0.69 -18.00 16 18 N -0.34 -17.06 3.59 -338.45 -1.22 -18.27 16 19 C 0.27 14.79 5.99 85.63 0.51 15.30 16 20 C -0.55 -31.33 9.39 25.60 0.24 -31.09 16 21 H 0.05 2.89 7.81 -2.91 -0.02 2.87 16 22 C 0.02 1.20 5.46 84.66 0.46 1.66 16 23 N -0.92 -52.26 13.29 21.45 0.28 -51.98 16 24 Si 0.97 43.48 29.54 68.60 2.03 45.51 16 25 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 26 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 27 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 28 H 0.08 2.80 8.14 -2.38 -0.02 2.78 16 29 H 0.10 2.94 8.14 -2.39 -0.02 2.92 16 30 H 0.07 2.45 7.07 -2.39 -0.02 2.43 16 31 H 0.17 6.93 5.91 -2.91 -0.02 6.91 16 32 H 0.42 10.38 8.84 -92.71 -0.82 9.56 16 33 H 0.41 5.30 8.49 -92.71 -0.79 4.51 16 34 H 0.06 1.31 8.14 -2.39 -0.02 1.30 16 35 H 0.06 1.26 6.53 -2.38 -0.02 1.25 16 36 H 0.06 0.55 8.10 -2.39 -0.02 0.53 16 37 H 0.10 1.29 5.30 -2.39 -0.01 1.28 16 38 H 0.04 0.29 8.14 -2.39 -0.02 0.27 16 39 H 0.08 0.59 8.08 -2.38 -0.02 0.57 16 40 H 0.06 0.79 6.36 -2.39 -0.02 0.78 16 41 H 0.13 0.16 7.87 -2.39 -0.02 0.14 16 42 H 0.09 0.18 7.98 -2.39 -0.02 0.16 16 43 H 0.15 -0.08 8.14 -2.39 -0.02 -0.10 16 44 H 0.05 2.78 7.04 -2.39 -0.02 2.76 16 45 H 0.02 1.44 8.14 -2.39 -0.02 1.42 16 46 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -77.75 388.49 0.67 -77.08 By element: Atomic # 1 Polarization: 23.22 SS G_CDS: -0.57 Total: 22.65 kcal Atomic # 6 Polarization: 12.09 SS G_CDS: 8.01 Total: 20.10 kcal Atomic # 7 Polarization: -127.35 SS G_CDS: -10.18 Total: -137.53 kcal Atomic # 8 Polarization: -22.80 SS G_CDS: -0.05 Total: -22.85 kcal Atomic # 9 Polarization: -6.39 SS G_CDS: 1.43 Total: -4.96 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -77.75 0.67 -77.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930634413.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.275 kcal (2) G-P(sol) polarization free energy of solvation -77.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 11.27 seconds