Wall clock time and date at job start Wed Apr 1 2020 05:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35916 * 116.99753 * 2 1 4 4 C 1.38860 * 120.40881 * 359.97438 * 3 2 1 5 5 N 1.31879 * 121.00195 * 180.02562 * 4 3 2 6 6 C 1.31680 * 121.93772 * 359.72761 * 5 4 3 7 7 C 1.39527 * 120.69442 * 0.53566 * 6 5 4 8 8 C 1.47856 * 120.53068 * 179.75196 * 7 6 5 9 9 O 1.21548 * 120.00049 * 173.92150 * 8 7 6 10 10 N 1.34771 * 120.00067 * 353.91704 * 8 7 6 11 11 C 1.46505 * 120.00111 * 179.97438 * 10 8 7 12 12 C 1.53949 * 113.58280 * 252.72191 * 11 10 8 13 13 C 1.52908 * 86.78264 * 220.66575 * 12 11 10 14 14 C 1.52902 * 121.13680 * 150.61989 * 13 12 11 15 15 C 1.53951 * 86.78716 * 100.81654 * 14 13 12 16 16 N 1.46500 * 113.58068 * 139.33108 * 15 14 13 17 17 C 1.36943 * 119.99471 * 107.28451 * 16 15 14 18 18 H 1.07996 * 120.00125 * 0.02562 * 17 16 15 19 19 C 1.38813 * 119.99760 * 179.97438 * 17 16 15 20 20 N 1.31618 * 120.00022 * 179.97438 * 19 17 16 21 21 Si 1.86796 * 119.99915 * 0.02562 * 19 17 16 22 22 H 1.48506 * 109.46990 * 89.99720 * 21 19 17 23 23 H 1.48501 * 109.47117 * 209.99422 * 21 19 17 24 24 H 1.48501 * 109.47270 * 330.00009 * 21 19 17 25 25 C 1.52908 * 121.13253 * 259.18137 * 13 12 11 26 26 C 1.52906 * 88.04346 * 24.89725 * 13 12 11 27 27 C 1.38846 * 120.40740 * 179.97438 * 3 2 1 28 28 C 1.50698 * 120.87498 * 0.02562 * 27 3 2 29 29 H 1.09001 * 109.47444 * 60.00144 * 1 2 3 30 30 H 1.09007 * 109.47330 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47368 * 299.99829 * 1 2 3 32 32 H 1.07998 * 119.49598 * 0.04280 * 4 3 2 33 33 H 1.08009 * 119.65221 * 180.28782 * 6 5 4 34 34 H 0.97006 * 120.00405 * 0.02562 * 10 8 7 35 35 H 1.08998 * 112.82189 * 23.91527 * 11 10 8 36 36 H 1.09006 * 113.65829 * 335.13741 * 12 11 10 37 37 H 1.09001 * 113.66068 * 106.18863 * 12 11 10 38 38 H 1.09001 * 113.66370 * 215.29170 * 14 13 12 39 39 H 1.09003 * 113.66010 * 346.34664 * 14 13 12 40 40 H 1.09000 * 113.57936 * 270.13229 * 15 14 13 41 41 H 0.96995 * 120.00010 * 287.28469 * 16 15 14 42 42 H 0.96991 * 119.99820 * 180.02562 * 20 19 17 43 43 H 1.08995 * 113.66524 * 13.64941 * 25 13 12 44 44 H 1.08998 * 113.66563 * 144.61798 * 25 13 12 45 45 H 1.08999 * 113.66415 * 220.63086 * 26 13 12 46 46 H 1.09001 * 113.66287 * 89.58023 * 26 13 12 47 47 H 1.08999 * 109.47658 * 263.63865 * 28 27 3 48 48 H 1.09006 * 109.47508 * 23.64232 * 28 27 3 49 49 H 1.08997 * 109.47364 * 143.64310 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2980 2.3810 -0.0005 5 7 1.8845 3.5622 -0.0010 6 6 3.1951 3.6891 0.0042 7 6 4.0197 2.5636 -0.0006 8 6 5.4910 2.7105 -0.0001 9 8 6.1997 1.7288 0.1071 10 7 6.0463 3.9327 -0.1187 11 6 7.5041 4.0783 -0.1177 12 6 8.0610 4.6910 1.1801 13 6 9.0137 5.4915 0.2916 14 6 9.5270 6.8666 0.7202 15 6 10.8301 6.1566 1.1298 16 7 12.0399 6.9069 0.7841 17 6 12.7699 7.5198 1.7674 18 1 12.4539 7.4496 2.7977 19 6 13.9165 8.2303 1.4399 20 7 14.6178 8.8198 2.3849 21 14 14.4634 8.3511 -0.3421 22 1 13.8434 9.5454 -0.9703 23 1 15.9423 8.4734 -0.3988 24 1 14.0392 7.1305 -1.0739 25 6 10.4701 5.0635 0.1071 26 6 7.9970 5.3448 -0.8410 27 6 3.4320 1.2936 0.0005 28 6 4.2809 0.0485 0.0005 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 0.2196 2.3226 -0.0003 33 1 3.6364 4.6749 0.0083 34 1 5.4807 4.7163 -0.2041 35 1 8.0198 3.1699 -0.4289 36 1 7.3405 5.3084 1.7167 37 1 8.5648 3.9695 1.8234 38 1 9.6507 7.5648 -0.1075 39 1 8.9800 7.2954 1.5599 40 1 10.8296 5.8054 2.1617 41 1 12.3239 6.9696 -0.1413 42 1 15.4188 9.3166 2.1560 43 1 10.6765 4.0520 0.4569 44 1 10.8585 5.2535 -0.8934 45 1 8.4498 5.1456 -1.8123 46 1 7.2587 6.1460 -0.8726 47 1 4.5793 -0.1879 1.0219 48 1 3.7079 -0.7820 -0.4120 49 1 5.1696 0.2146 -0.6083 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000964032280.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:28 Heat of formation + Delta-G solvation = 25.426435 kcal Electronic energy + Delta-G solvation = -29167.711656 eV Core-core repulsion = 25097.278927 eV Total energy + Delta-G solvation = -4070.432729 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.52598 -40.58423 -39.44039 -38.32918 -36.13649 -34.16910 -33.83967 -32.48042 -30.99841 -30.05620 -28.26727 -28.12811 -25.86544 -25.38394 -24.93696 -23.87607 -22.95898 -22.04006 -20.99701 -20.19320 -18.84495 -18.02588 -17.90570 -17.25997 -16.85455 -16.76759 -16.54333 -16.26919 -15.51853 -15.12234 -14.91615 -14.73457 -14.50301 -14.12733 -13.97925 -13.64606 -13.37584 -13.15897 -13.11998 -12.71516 -12.66245 -12.62416 -12.52321 -12.32928 -12.15893 -12.02107 -11.83903 -11.67933 -11.14185 -11.07399 -10.76012 -10.50645 -10.23597 -10.13370 -9.97393 -9.88858 -9.75905 -9.65766 -9.44722 -9.17280 -8.98642 -8.87819 -7.25133 -5.77306 -3.12509 0.11913 0.70986 2.43596 2.47834 2.93555 3.31935 3.37344 3.40146 3.45294 3.80633 3.97897 4.21710 4.26054 4.42640 4.47721 4.55129 4.55777 4.58832 4.64561 4.69348 4.74441 4.79927 4.92643 5.11723 5.25102 5.26928 5.37313 5.45908 5.48443 5.60639 5.64851 5.70047 5.75072 5.76868 5.81034 5.84803 5.95148 6.03924 6.11463 6.14402 6.23535 6.30826 6.40514 6.55684 6.59008 6.79057 7.00475 7.18692 7.31540 7.87185 7.99947 8.42682 9.20808 9.93503 10.13606 11.41059 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.035467 B = 0.001676 C = 0.001651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.284867 B =16705.844821 C =16954.410465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.305 6.305 3 C 0.066 3.934 4 C 0.040 3.960 5 N -0.456 5.456 6 C 0.102 3.898 7 C -0.155 4.155 8 C 0.564 3.436 9 O -0.524 6.524 10 N -0.711 5.711 11 C 0.123 3.877 12 C -0.124 4.124 13 C -0.102 4.102 14 C -0.148 4.148 15 C 0.174 3.826 16 N -0.738 5.738 17 C -0.247 4.247 18 H 0.091 0.909 19 C 0.004 3.996 20 N -0.934 5.934 21 Si 0.884 3.116 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.277 1.277 25 C -0.132 4.132 26 C -0.130 4.130 27 C -0.011 4.011 28 C -0.115 4.115 29 H 0.059 0.941 30 H 0.105 0.895 31 H 0.059 0.941 32 H 0.163 0.837 33 H 0.162 0.838 34 H 0.399 0.601 35 H 0.117 0.883 36 H 0.085 0.915 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.059 0.941 40 H 0.083 0.917 41 H 0.362 0.638 42 H 0.259 0.741 43 H 0.064 0.936 44 H 0.079 0.921 45 H 0.073 0.927 46 H 0.085 0.915 47 H 0.081 0.919 48 H 0.067 0.933 49 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.499 -16.498 -7.617 36.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.217 6.217 3 C 0.018 3.982 4 C -0.117 4.117 5 N -0.165 5.165 6 C -0.058 4.058 7 C -0.161 4.161 8 C 0.350 3.650 9 O -0.401 6.401 10 N -0.362 5.362 11 C 0.019 3.981 12 C -0.162 4.162 13 C -0.103 4.103 14 C -0.189 4.189 15 C 0.063 3.937 16 N -0.377 5.377 17 C -0.377 4.377 18 H 0.108 0.892 19 C -0.192 4.192 20 N -0.581 5.581 21 Si 0.715 3.285 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.203 1.203 25 C -0.171 4.171 26 C -0.169 4.169 27 C -0.020 4.020 28 C -0.171 4.171 29 H 0.077 0.923 30 H 0.124 0.876 31 H 0.078 0.922 32 H 0.180 0.820 33 H 0.179 0.821 34 H 0.235 0.765 35 H 0.135 0.865 36 H 0.104 0.896 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.078 0.922 40 H 0.101 0.899 41 H 0.195 0.805 42 H 0.069 0.931 43 H 0.083 0.917 44 H 0.098 0.902 45 H 0.092 0.908 46 H 0.103 0.897 47 H 0.100 0.900 48 H 0.086 0.914 49 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -31.284 -16.583 -7.311 36.155 hybrid contribution 0.268 0.115 -1.270 1.303 sum -31.016 -16.468 -8.582 36.150 Atomic orbital electron populations 1.23176 0.77748 1.04691 1.01652 1.86107 1.21693 1.25413 1.88490 1.19783 0.92349 0.86142 0.99881 1.23101 1.00796 0.87045 1.00720 1.67536 1.11851 1.26000 1.11149 1.22844 0.88786 0.98055 0.96097 1.20756 0.94862 0.93830 1.06608 1.17941 0.86638 0.83726 0.76709 1.90758 1.63043 1.37364 1.48954 1.45990 1.08257 1.08092 1.73812 1.22707 0.78390 0.99208 0.97760 1.23152 0.97926 0.98830 0.96318 1.22058 0.93389 0.98809 0.96049 1.23605 0.99971 0.94531 1.00788 1.21531 0.85299 0.90283 0.96618 1.42768 1.27303 1.61509 1.06169 1.19154 1.03922 1.24528 0.90076 0.89155 1.24691 0.97578 0.99994 0.96890 1.69702 1.18587 1.38755 1.31071 0.86548 0.77958 0.77779 0.86241 1.21104 1.21737 1.20307 1.23239 0.92759 1.00035 1.01059 1.23192 0.98674 0.96365 0.98626 1.19870 0.90825 0.95982 0.95291 1.20938 0.99520 0.92486 1.04131 0.92277 0.87621 0.92235 0.82020 0.82112 0.76505 0.86541 0.89623 0.90692 0.90375 0.92211 0.89940 0.80510 0.93069 0.91685 0.90246 0.90783 0.89685 0.90027 0.91362 0.88296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.07 9.82 101.05 0.99 1.06 16 2 O -0.31 -2.22 9.57 -19.48 -0.19 -2.41 16 3 C 0.07 0.56 6.68 -39.13 -0.26 0.30 16 4 C 0.04 0.31 10.21 -17.30 -0.18 0.13 16 5 N -0.46 -4.10 10.34 -12.79 -0.13 -4.24 16 6 C 0.10 0.83 10.69 -17.14 -0.18 0.65 16 7 C -0.16 -1.47 5.89 -104.84 -0.62 -2.09 16 8 C 0.56 6.02 7.73 -12.33 -0.10 5.92 16 9 O -0.52 -7.10 13.10 5.32 0.07 -7.03 16 10 N -0.71 -6.24 5.31 -53.79 -0.29 -6.52 16 11 C 0.12 1.27 4.24 -66.95 -0.28 0.98 16 12 C -0.12 -1.39 7.64 -26.28 -0.20 -1.59 16 13 C -0.10 -1.29 1.11 -154.72 -0.17 -1.46 16 14 C -0.15 -2.32 7.64 -26.29 -0.20 -2.52 16 15 C 0.17 3.24 4.48 -66.94 -0.30 2.94 16 16 N -0.74 -17.27 5.20 -52.47 -0.27 -17.54 16 17 C -0.25 -6.94 10.45 -15.06 -0.16 -7.10 16 18 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 19 C 0.00 0.12 5.50 -17.43 -0.10 0.03 16 20 N -0.93 -29.30 13.97 55.49 0.78 -28.52 16 21 Si 0.88 22.04 27.74 -169.99 -4.71 17.32 16 22 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 24 H -0.28 -6.49 6.52 56.52 0.37 -6.12 16 25 C -0.13 -1.98 7.59 -26.28 -0.20 -2.18 16 26 C -0.13 -1.32 7.59 -26.28 -0.20 -1.52 16 27 C -0.01 -0.10 5.97 -103.76 -0.62 -0.72 16 28 C -0.11 -1.10 8.70 36.00 0.31 -0.78 16 29 H 0.06 0.12 7.67 -51.93 -0.40 -0.28 16 30 H 0.11 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.06 0.13 7.68 -51.93 -0.40 -0.27 16 32 H 0.16 0.76 6.30 -52.49 -0.33 0.43 16 33 H 0.16 0.87 6.46 -52.48 -0.34 0.53 16 34 H 0.40 2.46 6.82 -40.82 -0.28 2.18 16 35 H 0.12 1.37 7.46 -51.93 -0.39 0.99 16 36 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.08 1.59 8.10 -51.93 -0.42 1.17 16 41 H 0.36 8.31 5.78 -40.82 -0.24 8.08 16 42 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 43 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 44 H 0.08 1.20 8.12 -51.93 -0.42 0.77 16 45 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.08 0.74 8.12 -51.93 -0.42 0.32 16 47 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 48 H 0.07 0.58 7.44 -51.93 -0.39 0.19 16 49 H 0.10 1.08 5.95 -51.93 -0.31 0.77 16 LS Contribution 395.30 15.07 5.96 5.96 Total: -1.00 -34.27 395.30 -8.55 -42.82 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -7.30 Total: 8.12 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: -2.46 Total: -7.95 kcal Atomic # 7 Polarization: -56.91 SS G_CDS: 0.08 Total: -56.83 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: -0.12 Total: -9.44 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.71 Total: 17.32 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.27 -8.55 -42.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000964032280.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.243 kcal (2) G-P(sol) polarization free energy of solvation -34.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds