Wall clock time and date at job start Wed Apr 1 2020 05:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35916 * 116.99753 * 2 1 4 4 C 1.38860 * 120.40881 * 359.97438 * 3 2 1 5 5 N 1.31879 * 121.00195 * 180.02562 * 4 3 2 6 6 C 1.31680 * 121.93772 * 359.72761 * 5 4 3 7 7 C 1.39527 * 120.69442 * 0.53566 * 6 5 4 8 8 C 1.47856 * 120.53068 * 179.75196 * 7 6 5 9 9 O 1.21548 * 120.00049 * 173.92150 * 8 7 6 10 10 N 1.34771 * 120.00067 * 353.91704 * 8 7 6 11 11 C 1.46505 * 120.00111 * 179.97438 * 10 8 7 12 12 C 1.53949 * 113.58280 * 252.72191 * 11 10 8 13 13 C 1.52908 * 86.78264 * 220.66575 * 12 11 10 14 14 C 1.52902 * 121.13680 * 150.61989 * 13 12 11 15 15 C 1.53951 * 86.78716 * 100.81654 * 14 13 12 16 16 N 1.46500 * 113.58068 * 139.33108 * 15 14 13 17 17 C 1.36943 * 119.99471 * 107.28451 * 16 15 14 18 18 H 1.07996 * 120.00125 * 0.02562 * 17 16 15 19 19 C 1.38813 * 119.99760 * 179.97438 * 17 16 15 20 20 N 1.31618 * 120.00022 * 179.97438 * 19 17 16 21 21 Si 1.86796 * 119.99915 * 0.02562 * 19 17 16 22 22 H 1.48506 * 109.46990 * 89.99720 * 21 19 17 23 23 H 1.48501 * 109.47117 * 209.99422 * 21 19 17 24 24 H 1.48501 * 109.47270 * 330.00009 * 21 19 17 25 25 C 1.52908 * 121.13253 * 259.18137 * 13 12 11 26 26 C 1.52906 * 88.04346 * 24.89725 * 13 12 11 27 27 C 1.38846 * 120.40740 * 179.97438 * 3 2 1 28 28 C 1.50698 * 120.87498 * 0.02562 * 27 3 2 29 29 H 1.09001 * 109.47444 * 60.00144 * 1 2 3 30 30 H 1.09007 * 109.47330 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47368 * 299.99829 * 1 2 3 32 32 H 1.07998 * 119.49598 * 0.04280 * 4 3 2 33 33 H 1.08009 * 119.65221 * 180.28782 * 6 5 4 34 34 H 0.97006 * 120.00405 * 0.02562 * 10 8 7 35 35 H 1.08998 * 112.82189 * 23.91527 * 11 10 8 36 36 H 1.09006 * 113.65829 * 335.13741 * 12 11 10 37 37 H 1.09001 * 113.66068 * 106.18863 * 12 11 10 38 38 H 1.09001 * 113.66370 * 215.29170 * 14 13 12 39 39 H 1.09003 * 113.66010 * 346.34664 * 14 13 12 40 40 H 1.09000 * 113.57936 * 270.13229 * 15 14 13 41 41 H 0.96995 * 120.00010 * 287.28469 * 16 15 14 42 42 H 0.96991 * 119.99820 * 180.02562 * 20 19 17 43 43 H 1.08995 * 113.66524 * 13.64941 * 25 13 12 44 44 H 1.08998 * 113.66563 * 144.61798 * 25 13 12 45 45 H 1.08999 * 113.66415 * 220.63086 * 26 13 12 46 46 H 1.09001 * 113.66287 * 89.58023 * 26 13 12 47 47 H 1.08999 * 109.47658 * 263.63865 * 28 27 3 48 48 H 1.09006 * 109.47508 * 23.64232 * 28 27 3 49 49 H 1.08997 * 109.47364 * 143.64310 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2980 2.3810 -0.0005 5 7 1.8845 3.5622 -0.0010 6 6 3.1951 3.6891 0.0042 7 6 4.0197 2.5636 -0.0006 8 6 5.4910 2.7105 -0.0001 9 8 6.1997 1.7288 0.1071 10 7 6.0463 3.9327 -0.1187 11 6 7.5041 4.0783 -0.1177 12 6 8.0610 4.6910 1.1801 13 6 9.0137 5.4915 0.2916 14 6 9.5270 6.8666 0.7202 15 6 10.8301 6.1566 1.1298 16 7 12.0399 6.9069 0.7841 17 6 12.7699 7.5198 1.7674 18 1 12.4539 7.4496 2.7977 19 6 13.9165 8.2303 1.4399 20 7 14.6178 8.8198 2.3849 21 14 14.4634 8.3511 -0.3421 22 1 13.8434 9.5454 -0.9703 23 1 15.9423 8.4734 -0.3988 24 1 14.0392 7.1305 -1.0739 25 6 10.4701 5.0635 0.1071 26 6 7.9970 5.3448 -0.8410 27 6 3.4320 1.2936 0.0005 28 6 4.2809 0.0485 0.0005 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 0.2196 2.3226 -0.0003 33 1 3.6364 4.6749 0.0083 34 1 5.4807 4.7163 -0.2041 35 1 8.0198 3.1699 -0.4289 36 1 7.3405 5.3084 1.7167 37 1 8.5648 3.9695 1.8234 38 1 9.6507 7.5648 -0.1075 39 1 8.9800 7.2954 1.5599 40 1 10.8296 5.8054 2.1617 41 1 12.3239 6.9696 -0.1413 42 1 15.4188 9.3166 2.1560 43 1 10.6765 4.0520 0.4569 44 1 10.8585 5.2535 -0.8934 45 1 8.4498 5.1456 -1.8123 46 1 7.2587 6.1460 -0.8726 47 1 4.5793 -0.1879 1.0219 48 1 3.7079 -0.7820 -0.4120 49 1 5.1696 0.2146 -0.6083 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000964032280.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:26 Heat of formation + Delta-G solvation = 1.847900 kcal Electronic energy + Delta-G solvation = -29168.734098 eV Core-core repulsion = 25097.278927 eV Total energy + Delta-G solvation = -4071.455171 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -42.18830 -41.52740 -40.27127 -38.93079 -37.38201 -35.41419 -34.71439 -33.92151 -32.27405 -31.31930 -28.92037 -28.49389 -26.74855 -26.65412 -26.06797 -25.23603 -23.79153 -23.03313 -21.82398 -21.54398 -19.87638 -19.37454 -18.63295 -18.52719 -17.47488 -17.37239 -17.12175 -17.01079 -16.91070 -16.23122 -16.03028 -15.78384 -15.42601 -15.16605 -15.01209 -14.71951 -14.54970 -14.04398 -13.89140 -13.79685 -13.69602 -13.60513 -13.53206 -13.37628 -13.11497 -12.96871 -12.87488 -12.73074 -12.40793 -12.35237 -12.18264 -12.00195 -11.85166 -11.45717 -11.15809 -11.04401 -10.83248 -10.78336 -10.67488 -10.42000 -9.98397 -9.54232 -9.24687 -8.01477 -5.34030 -0.52841 0.08518 1.38521 1.42199 1.49616 1.72071 1.88088 2.32257 2.49588 2.66903 3.26778 3.28719 3.40675 3.47803 3.50748 3.61686 3.63355 3.70484 3.81588 3.90855 4.00024 4.08886 4.12079 4.31989 4.34857 4.39396 4.50198 4.53588 4.61030 4.63841 4.70964 4.76856 4.82089 4.84626 4.96876 4.99500 5.02671 5.05680 5.11126 5.11706 5.17804 5.28143 5.40195 5.49725 5.61561 5.64829 5.79867 6.12904 6.24184 6.47430 6.71598 7.09497 7.12919 7.87399 8.06678 9.20275 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.035467 B = 0.001676 C = 0.001651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.284867 B =16705.844821 C =16954.410465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.321 6.321 3 C 0.065 3.935 4 C 0.045 3.955 5 N -0.471 5.471 6 C 0.104 3.896 7 C -0.165 4.165 8 C 0.563 3.437 9 O -0.559 6.559 10 N -0.697 5.697 11 C 0.131 3.869 12 C -0.123 4.123 13 C -0.091 4.091 14 C -0.138 4.138 15 C 0.146 3.854 16 N -0.743 5.743 17 C -0.234 4.234 18 H 0.054 0.946 19 C -0.067 4.067 20 N -0.986 5.986 21 Si 0.957 3.043 22 H -0.277 1.277 23 H -0.297 1.297 24 H -0.251 1.251 25 C -0.122 4.122 26 C -0.115 4.115 27 C -0.033 4.033 28 C -0.107 4.107 29 H 0.072 0.928 30 H 0.122 0.878 31 H 0.071 0.929 32 H 0.191 0.809 33 H 0.188 0.812 34 H 0.415 0.585 35 H 0.102 0.898 36 H 0.099 0.901 37 H 0.062 0.938 38 H 0.077 0.923 39 H 0.060 0.940 40 H 0.065 0.935 41 H 0.366 0.634 42 H 0.257 0.743 43 H 0.068 0.932 44 H 0.085 0.915 45 H 0.081 0.919 46 H 0.109 0.891 47 H 0.073 0.927 48 H 0.074 0.926 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.518 -16.706 -9.942 39.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.233 6.233 3 C 0.017 3.983 4 C -0.112 4.112 5 N -0.180 5.180 6 C -0.055 4.055 7 C -0.170 4.170 8 C 0.350 3.650 9 O -0.439 6.439 10 N -0.348 5.348 11 C 0.026 3.974 12 C -0.162 4.162 13 C -0.092 4.092 14 C -0.179 4.179 15 C 0.038 3.962 16 N -0.384 5.384 17 C -0.365 4.365 18 H 0.072 0.928 19 C -0.258 4.258 20 N -0.636 5.636 21 Si 0.785 3.215 22 H -0.203 1.203 23 H -0.224 1.224 24 H -0.176 1.176 25 C -0.161 4.161 26 C -0.153 4.153 27 C -0.042 4.042 28 C -0.163 4.163 29 H 0.091 0.909 30 H 0.140 0.860 31 H 0.090 0.910 32 H 0.208 0.792 33 H 0.205 0.795 34 H 0.253 0.747 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.081 0.919 38 H 0.095 0.905 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.200 0.800 42 H 0.066 0.934 43 H 0.087 0.913 44 H 0.104 0.896 45 H 0.100 0.900 46 H 0.127 0.873 47 H 0.091 0.909 48 H 0.093 0.907 49 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -34.389 -16.810 -9.657 39.477 hybrid contribution 1.062 0.095 -0.420 1.146 sum -33.327 -16.715 -10.077 38.622 Atomic orbital electron populations 1.23503 0.75593 1.06300 1.02867 1.86096 1.23947 1.25001 1.88277 1.19808 0.91951 0.86951 0.99565 1.23553 1.02102 0.86371 0.99211 1.67622 1.12119 1.26563 1.11738 1.23207 0.88566 0.98668 0.95040 1.20691 0.94152 0.94353 1.07793 1.18157 0.87090 0.83659 0.76057 1.90749 1.63884 1.38601 1.50678 1.45811 1.07795 1.08236 1.72970 1.22458 0.79109 0.98808 0.97034 1.23203 0.97793 0.98573 0.96617 1.21876 0.92901 0.96249 0.98150 1.23410 0.97797 0.95944 1.00721 1.21921 0.84935 0.92271 0.97104 1.42755 1.28426 1.61968 1.05278 1.19122 1.03959 1.23715 0.89707 0.92770 1.25539 0.98003 1.00386 1.01848 1.69893 1.19406 1.40568 1.33751 0.85371 0.76816 0.78865 0.80486 1.20311 1.22431 1.17572 1.23120 0.94368 0.98751 0.99877 1.23158 0.97815 0.96562 0.97729 1.20034 0.91788 0.96047 0.96362 1.20796 0.99040 0.93134 1.03312 0.90938 0.85993 0.91043 0.79222 0.79528 0.74663 0.88014 0.88245 0.91905 0.90469 0.92143 0.91693 0.79997 0.93421 0.91324 0.89632 0.90017 0.87296 0.90860 0.90684 0.89906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.04 9.82 113.37 1.11 1.16 16 2 O -0.32 -4.20 9.57 -92.61 -0.89 -5.09 16 3 C 0.07 1.01 6.68 22.56 0.15 1.16 16 4 C 0.04 0.58 10.21 84.83 0.87 1.44 16 5 N -0.47 -7.31 10.34 -194.38 -2.01 -9.32 16 6 C 0.10 1.47 10.69 85.03 0.91 2.38 16 7 C -0.16 -2.93 5.89 -20.01 -0.12 -3.05 16 8 C 0.56 11.43 7.73 86.79 0.67 12.10 16 9 O -0.56 -15.21 13.10 -3.87 -0.05 -15.26 16 10 N -0.70 -10.56 5.31 -442.38 -2.35 -12.91 16 11 C 0.13 2.38 4.24 45.63 0.19 2.58 16 12 C -0.12 -2.54 7.64 30.88 0.24 -2.30 16 13 C -0.09 -2.08 1.11 -52.32 -0.06 -2.14 16 14 C -0.14 -4.11 7.64 30.88 0.24 -3.87 16 15 C 0.15 5.43 4.48 45.63 0.20 5.63 16 16 N -0.74 -34.59 5.20 -319.90 -1.67 -36.25 16 17 C -0.23 -13.48 10.45 84.03 0.88 -12.60 16 18 H 0.05 3.43 8.06 -2.91 -0.02 3.41 16 19 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 20 N -0.99 -63.84 13.97 21.65 0.30 -63.54 16 21 Si 0.96 45.63 27.74 68.60 1.90 47.54 16 22 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 23 H -0.30 -14.41 7.11 99.48 0.71 -13.71 16 24 H -0.25 -10.76 6.52 99.48 0.65 -10.11 16 25 C -0.12 -3.49 7.59 30.89 0.23 -3.25 16 26 C -0.11 -1.90 7.59 30.88 0.23 -1.67 16 27 C -0.03 -0.63 5.97 -19.31 -0.12 -0.75 16 28 C -0.11 -2.09 8.70 71.24 0.62 -1.47 16 29 H 0.07 0.10 7.67 -2.39 -0.02 0.08 16 30 H 0.12 0.06 8.14 -2.38 -0.02 0.04 16 31 H 0.07 0.12 7.68 -2.39 -0.02 0.10 16 32 H 0.19 1.18 6.30 -2.91 -0.02 1.16 16 33 H 0.19 1.39 6.46 -2.91 -0.02 1.38 16 34 H 0.41 3.66 6.82 -92.70 -0.63 3.02 16 35 H 0.10 2.26 7.46 -2.39 -0.02 2.24 16 36 H 0.10 1.81 8.14 -2.38 -0.02 1.79 16 37 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 39 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.06 2.60 8.10 -2.39 -0.02 2.58 16 41 H 0.37 16.24 5.78 -92.71 -0.54 15.70 16 42 H 0.26 15.85 8.31 -92.72 -0.77 15.08 16 43 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.09 2.36 8.12 -2.39 -0.02 2.34 16 45 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.11 1.37 8.12 -2.39 -0.02 1.35 16 47 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 48 H 0.07 1.29 7.44 -2.38 -0.02 1.27 16 49 H 0.08 1.89 5.95 -2.39 -0.01 1.87 16 Total: -1.00 -77.04 395.30 1.73 -75.31 By element: Atomic # 1 Polarization: 27.90 SS G_CDS: -0.24 Total: 27.67 kcal Atomic # 6 Polarization: -14.87 SS G_CDS: 6.72 Total: -8.14 kcal Atomic # 7 Polarization: -116.30 SS G_CDS: -5.72 Total: -122.02 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: -0.94 Total: -20.35 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 1.90 Total: 47.54 kcal Total: -77.04 1.73 -75.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000964032280.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.161 kcal (2) G-P(sol) polarization free energy of solvation -77.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds