Wall clock time and date at job start Wed Apr 1 2020 06:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.33494 * 126.82772 * 2 1 4 4 N 1.20658 * 113.15495 * 179.97438 * 3 2 1 5 5 C 1.30011 * 112.30477 * 359.97438 * 4 3 2 6 6 C 1.50700 * 127.33737 * 180.02562 * 5 4 3 7 7 C 1.53007 * 117.49434 * 8.58540 * 6 5 4 8 8 C 1.52996 * 117.49975 * 299.96185 * 6 5 4 9 9 C 1.37353 * 126.82988 * 179.97438 * 2 1 3 10 10 C 1.47393 * 128.56619 * 0.02562 * 9 2 1 11 11 O 1.21614 * 120.00285 * 90.02551 * 10 9 2 12 12 N 1.34780 * 120.00101 * 270.02379 * 10 9 2 13 13 C 1.46501 * 120.00189 * 179.97438 * 12 10 9 14 14 C 1.53948 * 113.57740 * 252.71964 * 13 12 10 15 15 C 1.52912 * 86.78227 * 220.66267 * 14 13 12 16 16 C 1.52903 * 121.13885 * 150.61856 * 15 14 13 17 17 C 1.53948 * 86.78238 * 100.82209 * 16 15 14 18 18 N 1.46500 * 113.57758 * 139.33738 * 17 16 15 19 19 C 1.36935 * 119.99979 * 107.28060 * 18 17 16 20 20 H 1.07996 * 120.00158 * 359.97438 * 19 18 17 21 21 C 1.38820 * 120.00219 * 180.02562 * 19 18 17 22 22 N 1.31617 * 119.99754 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 120.00180 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47246 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47243 * 119.99636 * 23 21 19 26 26 H 1.48499 * 109.47243 * 239.99728 * 23 21 19 27 27 C 1.52911 * 121.13785 * 259.18311 * 15 14 13 28 28 C 1.52912 * 88.04055 * 24.89889 * 15 14 13 29 29 H 1.09004 * 109.47819 * 0.02814 * 1 2 3 30 30 H 1.08997 * 109.47209 * 120.02825 * 1 2 3 31 31 H 1.09001 * 109.47211 * 240.02486 * 1 2 3 32 32 H 1.08996 * 115.55127 * 154.28504 * 6 5 4 33 33 H 1.08997 * 117.49707 * 359.97438 * 7 6 5 34 34 H 1.08992 * 117.49593 * 145.02043 * 7 6 5 35 35 H 1.09002 * 117.49917 * 214.97659 * 8 6 5 36 36 H 1.09002 * 117.50142 * 359.97438 * 8 6 5 37 37 H 0.97001 * 119.99734 * 359.97438 * 12 10 9 38 38 H 1.08998 * 112.81980 * 23.91201 * 13 12 10 39 39 H 1.08996 * 113.66505 * 335.13337 * 14 13 12 40 40 H 1.09003 * 113.65716 * 106.19625 * 14 13 12 41 41 H 1.09002 * 113.66497 * 215.29740 * 16 15 14 42 42 H 1.09002 * 113.66166 * 346.35103 * 16 15 14 43 43 H 1.09000 * 113.58053 * 270.12654 * 17 16 15 44 44 H 0.97002 * 120.00278 * 287.28138 * 18 17 16 45 45 H 0.96997 * 120.00152 * 180.02562 * 22 21 19 46 46 H 1.08996 * 113.66514 * 13.64949 * 27 15 14 47 47 H 1.08997 * 113.66190 * 144.61186 * 27 15 14 48 48 H 1.08998 * 113.66173 * 220.63017 * 28 15 14 49 49 H 1.09004 * 113.66264 * 89.57274 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.3071 1.0685 0.0000 4 7 3.4795 0.7833 0.0005 5 6 3.6746 -0.5020 0.0014 6 6 4.9964 -1.2259 0.0028 7 6 6.2604 -0.3879 0.2058 8 6 5.9424 -0.9715 -1.1724 9 6 2.3303 -1.0994 0.0005 10 6 1.9587 -2.5257 0.0006 11 8 1.8062 -3.1145 -1.0525 12 7 1.7879 -3.1775 1.1679 13 6 1.4179 -4.5951 1.1680 14 6 -0.0414 -4.8506 1.5864 15 6 0.4854 -6.0495 2.3759 16 6 -0.2209 -6.5343 3.6425 17 6 -0.8410 -7.6400 2.7691 18 7 -0.8924 -8.9475 3.4279 19 6 -2.0905 -9.4490 3.8617 20 1 -2.9975 -8.8805 3.7185 21 6 -2.1392 -10.6876 4.4865 22 7 -1.0338 -11.3803 4.6615 23 14 -3.7734 -11.3714 5.0788 24 1 -4.8572 -10.4062 4.7640 25 1 -4.0468 -12.6616 4.3964 26 1 -3.7158 -11.5902 6.5465 27 6 0.3654 -7.4718 1.8276 28 6 1.8387 -5.3412 2.4472 29 1 -0.3635 1.0277 -0.0005 30 1 -0.3633 -0.5143 -0.8897 31 1 -0.3634 -0.5134 0.8902 32 1 4.9829 -2.2285 0.4301 33 1 6.1359 0.6869 0.3379 34 1 7.0787 -0.8392 0.7667 35 1 6.5516 -1.8067 -1.5181 36 1 5.6086 -0.2809 -1.9469 37 1 1.9099 -2.7080 2.0079 38 1 1.7057 -5.1071 0.2499 39 1 -0.4609 -4.0640 2.2136 40 1 -0.6926 -5.1253 0.7566 41 1 0.4598 -6.9102 4.4063 42 1 -0.9506 -5.8259 4.0348 43 1 -1.7908 -7.3563 2.3158 44 1 -0.0777 -9.4580 3.5569 45 1 -1.0678 -12.2459 5.0977 46 1 0.1041 -7.5125 0.7702 47 1 1.2115 -8.1108 2.0800 48 1 2.6893 -6.0078 2.3050 49 1 1.9477 -4.6924 3.3163 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000964372851.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:38:10 Heat of formation + Delta-G solvation = 101.070697 kcal Electronic energy + Delta-G solvation = -29372.045882 eV Core-core repulsion = 25304.893335 eV Total energy + Delta-G solvation = -4067.152547 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 7.38 seconds Orbital eigenvalues (eV) -45.25750 -40.63153 -39.23700 -37.91856 -35.93660 -34.25119 -33.60353 -33.23961 -32.12635 -29.58332 -28.45052 -25.83920 -25.73549 -25.24919 -24.51205 -23.90747 -22.86106 -22.29585 -20.92768 -20.16595 -19.68471 -18.40561 -18.07642 -17.76538 -17.01437 -16.97641 -16.48199 -15.84745 -15.35440 -15.18050 -14.78960 -14.76012 -14.41414 -14.08453 -13.75963 -13.75341 -13.51298 -13.16986 -12.83076 -12.64592 -12.49598 -12.43966 -12.19876 -12.06713 -11.94587 -11.71332 -11.68442 -11.37022 -11.02731 -10.93114 -10.88644 -10.74017 -10.56303 -10.23086 -10.04894 -9.95769 -9.83279 -9.76340 -9.74272 -9.40703 -9.19160 -8.87353 -6.95941 -5.78972 -3.07330 0.91001 1.44502 2.10505 2.43615 2.97531 3.34698 3.41820 3.47630 3.49801 3.54911 3.85058 4.33852 4.39005 4.43426 4.50424 4.54192 4.55512 4.61281 4.67760 4.73227 4.82863 4.91552 4.93359 5.09311 5.18580 5.26431 5.36692 5.40699 5.41947 5.48445 5.52393 5.59558 5.65510 5.66399 5.74583 5.87768 5.89567 5.94339 6.02336 6.15692 6.19775 6.34616 6.39785 6.42559 6.61750 6.90330 7.11610 7.20401 7.69597 7.83347 7.86910 8.39908 9.50974 10.09742 10.43928 11.43582 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.022511 B = 0.001828 C = 0.001744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.543557 B =15312.770929 C =16051.311522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.021 3.979 3 O 0.097 5.903 4 N -0.355 5.355 5 C 0.089 3.911 6 C -0.093 4.093 7 C -0.160 4.160 8 C -0.157 4.157 9 C -0.249 4.249 10 C 0.600 3.400 11 O -0.523 6.523 12 N -0.706 5.706 13 C 0.121 3.879 14 C -0.123 4.123 15 C -0.102 4.102 16 C -0.148 4.148 17 C 0.169 3.831 18 N -0.714 5.714 19 C -0.241 4.241 20 H 0.071 0.929 21 C -0.015 4.015 22 N -0.933 5.933 23 Si 0.907 3.093 24 H -0.280 1.280 25 H -0.292 1.292 26 H -0.292 1.292 27 C -0.129 4.129 28 C -0.130 4.130 29 H 0.091 0.909 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.129 0.871 33 H 0.102 0.898 34 H 0.105 0.895 35 H 0.107 0.893 36 H 0.097 0.903 37 H 0.402 0.598 38 H 0.116 0.884 39 H 0.084 0.916 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.054 0.946 43 H 0.074 0.926 44 H 0.385 0.615 45 H 0.255 0.745 46 H 0.061 0.939 47 H 0.081 0.919 48 H 0.074 0.926 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.584 26.088 -8.835 29.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.043 4.043 3 O 0.036 5.964 4 N -0.060 5.060 5 C -0.072 4.072 6 C -0.112 4.112 7 C -0.198 4.198 8 C -0.195 4.195 9 C -0.256 4.256 10 C 0.384 3.616 11 O -0.398 6.398 12 N -0.356 5.356 13 C 0.018 3.982 14 C -0.162 4.162 15 C -0.103 4.103 16 C -0.189 4.189 17 C 0.057 3.943 18 N -0.351 5.351 19 C -0.373 4.373 20 H 0.089 0.911 21 C -0.211 4.211 22 N -0.581 5.581 23 Si 0.738 3.262 24 H -0.205 1.205 25 H -0.219 1.219 26 H -0.219 1.219 27 C -0.168 4.168 28 C -0.168 4.168 29 H 0.109 0.891 30 H 0.116 0.884 31 H 0.115 0.885 32 H 0.146 0.854 33 H 0.121 0.879 34 H 0.124 0.876 35 H 0.125 0.875 36 H 0.116 0.884 37 H 0.236 0.764 38 H 0.134 0.866 39 H 0.102 0.898 40 H 0.092 0.908 41 H 0.097 0.903 42 H 0.073 0.927 43 H 0.092 0.908 44 H 0.219 0.781 45 H 0.065 0.935 46 H 0.080 0.920 47 H 0.100 0.900 48 H 0.093 0.907 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 11.043 26.647 -9.554 30.386 hybrid contribution -0.785 -1.075 0.883 1.598 sum 10.258 25.572 -8.670 28.885 Atomic orbital electron populations 1.20513 0.82973 1.05342 1.05036 1.24642 0.96057 0.85038 0.98546 1.84557 1.11059 1.32886 1.67914 1.73550 0.95873 1.16339 1.20248 1.23720 0.94205 0.88553 1.00764 1.20266 0.84873 0.99654 1.06450 1.23049 0.96910 1.00208 0.99612 1.23058 1.01084 1.03668 0.91673 1.21855 0.92670 0.95323 1.15753 1.16891 0.76547 0.83848 0.84317 1.90844 1.50125 1.67533 1.31301 1.46062 1.69816 1.11833 1.07903 1.22748 0.96097 0.79314 1.00082 1.23143 0.95950 0.97341 0.99774 1.22072 0.95074 0.93935 0.99219 1.23641 0.99396 1.00069 0.95840 1.21535 0.94860 0.86386 0.91560 1.42427 1.07811 1.16780 1.68128 1.19354 0.86978 1.00261 1.30674 0.91058 1.24769 0.97053 0.97471 1.01770 1.69667 1.25679 1.14109 1.48639 0.86121 0.83169 0.78773 0.78156 1.20535 1.21872 1.21890 1.23218 1.00853 0.93159 0.99562 1.23185 0.98474 0.98766 0.96365 0.89058 0.88383 0.88471 0.85362 0.87914 0.87640 0.87495 0.88417 0.76378 0.86608 0.89781 0.90781 0.90283 0.92716 0.90786 0.78121 0.93540 0.92035 0.90003 0.90722 0.89811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.40 10.33 36.00 0.37 -0.03 16 2 C 0.02 0.17 7.55 -34.63 -0.26 -0.09 16 3 O 0.10 0.93 11.06 18.65 0.21 1.14 16 4 N -0.35 -3.79 11.71 34.78 0.41 -3.38 16 5 C 0.09 0.92 7.08 -79.77 -0.56 0.35 16 6 C -0.09 -0.80 6.32 -91.77 -0.58 -1.38 16 7 C -0.16 -1.12 10.16 -26.72 -0.27 -1.39 16 8 C -0.16 -1.17 10.23 -26.73 -0.27 -1.45 16 9 C -0.25 -2.52 6.24 -102.90 -0.64 -3.17 16 10 C 0.60 6.81 7.63 -12.53 -0.10 6.71 16 11 O -0.52 -7.96 16.71 5.27 0.09 -7.87 16 12 N -0.71 -6.51 5.35 -53.94 -0.29 -6.80 16 13 C 0.12 1.29 4.24 -66.95 -0.28 1.01 16 14 C -0.12 -1.39 7.64 -26.28 -0.20 -1.59 16 15 C -0.10 -1.34 1.11 -154.71 -0.17 -1.51 16 16 C -0.15 -2.41 7.64 -26.29 -0.20 -2.61 16 17 C 0.17 3.24 4.48 -66.95 -0.30 2.94 16 18 N -0.71 -17.63 5.40 -52.48 -0.28 -17.91 16 19 C -0.24 -6.64 9.97 -15.06 -0.15 -6.79 16 20 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 21 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 22 N -0.93 -27.98 13.06 55.49 0.72 -27.25 16 23 Si 0.91 22.22 29.55 -169.99 -5.02 17.19 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 26 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 27 C -0.13 -2.04 7.59 -26.28 -0.20 -2.24 16 28 C -0.13 -1.39 7.59 -26.28 -0.20 -1.59 16 29 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.13 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.10 0.78 7.97 -51.93 -0.41 0.37 16 34 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.40 2.83 8.71 -40.82 -0.36 2.47 16 38 H 0.12 1.44 7.46 -51.93 -0.39 1.05 16 39 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 42 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.07 1.44 8.10 -51.93 -0.42 1.02 16 44 H 0.38 10.09 7.92 -40.82 -0.32 9.77 16 45 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 46 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.08 1.34 8.12 -51.93 -0.42 0.92 16 48 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 49 H 0.08 0.79 8.12 -51.93 -0.42 0.37 16 LS Contribution 413.85 15.07 6.24 6.24 Total: -1.00 -33.05 413.85 -9.84 -42.89 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -7.79 Total: 9.10 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: -4.12 Total: -13.34 kcal Atomic # 7 Polarization: -55.90 SS G_CDS: 0.56 Total: -55.34 kcal Atomic # 8 Polarization: -7.03 SS G_CDS: 0.29 Total: -6.74 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -33.05 -9.84 -42.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000964372851.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.959 kcal (2) G-P(sol) polarization free energy of solvation -33.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.38 seconds