Wall clock time and date at job start Wed Apr 1 2020 06:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.33494 * 126.82772 * 2 1 4 4 N 1.20658 * 113.15495 * 179.97438 * 3 2 1 5 5 C 1.30011 * 112.30477 * 359.97438 * 4 3 2 6 6 C 1.50700 * 127.33737 * 180.02562 * 5 4 3 7 7 C 1.53007 * 117.49434 * 8.58540 * 6 5 4 8 8 C 1.52996 * 117.49975 * 299.96185 * 6 5 4 9 9 C 1.37353 * 126.82988 * 179.97438 * 2 1 3 10 10 C 1.47393 * 128.56619 * 0.02562 * 9 2 1 11 11 O 1.21614 * 120.00285 * 90.02551 * 10 9 2 12 12 N 1.34780 * 120.00101 * 270.02379 * 10 9 2 13 13 C 1.46501 * 120.00189 * 179.97438 * 12 10 9 14 14 C 1.53948 * 113.57740 * 252.71964 * 13 12 10 15 15 C 1.52912 * 86.78227 * 220.66267 * 14 13 12 16 16 C 1.52903 * 121.13885 * 150.61856 * 15 14 13 17 17 C 1.53948 * 86.78238 * 100.82209 * 16 15 14 18 18 N 1.46500 * 113.57758 * 139.33738 * 17 16 15 19 19 C 1.36935 * 119.99979 * 107.28060 * 18 17 16 20 20 H 1.07996 * 120.00158 * 359.97438 * 19 18 17 21 21 C 1.38820 * 120.00219 * 180.02562 * 19 18 17 22 22 N 1.31617 * 119.99754 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 120.00180 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47246 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47243 * 119.99636 * 23 21 19 26 26 H 1.48499 * 109.47243 * 239.99728 * 23 21 19 27 27 C 1.52911 * 121.13785 * 259.18311 * 15 14 13 28 28 C 1.52912 * 88.04055 * 24.89889 * 15 14 13 29 29 H 1.09004 * 109.47819 * 0.02814 * 1 2 3 30 30 H 1.08997 * 109.47209 * 120.02825 * 1 2 3 31 31 H 1.09001 * 109.47211 * 240.02486 * 1 2 3 32 32 H 1.08996 * 115.55127 * 154.28504 * 6 5 4 33 33 H 1.08997 * 117.49707 * 359.97438 * 7 6 5 34 34 H 1.08992 * 117.49593 * 145.02043 * 7 6 5 35 35 H 1.09002 * 117.49917 * 214.97659 * 8 6 5 36 36 H 1.09002 * 117.50142 * 359.97438 * 8 6 5 37 37 H 0.97001 * 119.99734 * 359.97438 * 12 10 9 38 38 H 1.08998 * 112.81980 * 23.91201 * 13 12 10 39 39 H 1.08996 * 113.66505 * 335.13337 * 14 13 12 40 40 H 1.09003 * 113.65716 * 106.19625 * 14 13 12 41 41 H 1.09002 * 113.66497 * 215.29740 * 16 15 14 42 42 H 1.09002 * 113.66166 * 346.35103 * 16 15 14 43 43 H 1.09000 * 113.58053 * 270.12654 * 17 16 15 44 44 H 0.97002 * 120.00278 * 287.28138 * 18 17 16 45 45 H 0.96997 * 120.00152 * 180.02562 * 22 21 19 46 46 H 1.08996 * 113.66514 * 13.64949 * 27 15 14 47 47 H 1.08997 * 113.66190 * 144.61186 * 27 15 14 48 48 H 1.08998 * 113.66173 * 220.63017 * 28 15 14 49 49 H 1.09004 * 113.66264 * 89.57274 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.3071 1.0685 0.0000 4 7 3.4795 0.7833 0.0005 5 6 3.6746 -0.5020 0.0014 6 6 4.9964 -1.2259 0.0028 7 6 6.2604 -0.3879 0.2058 8 6 5.9424 -0.9715 -1.1724 9 6 2.3303 -1.0994 0.0005 10 6 1.9587 -2.5257 0.0006 11 8 1.8062 -3.1145 -1.0525 12 7 1.7879 -3.1775 1.1679 13 6 1.4179 -4.5951 1.1680 14 6 -0.0414 -4.8506 1.5864 15 6 0.4854 -6.0495 2.3759 16 6 -0.2209 -6.5343 3.6425 17 6 -0.8410 -7.6400 2.7691 18 7 -0.8924 -8.9475 3.4279 19 6 -2.0905 -9.4490 3.8617 20 1 -2.9975 -8.8805 3.7185 21 6 -2.1392 -10.6876 4.4865 22 7 -1.0338 -11.3803 4.6615 23 14 -3.7734 -11.3714 5.0788 24 1 -4.8572 -10.4062 4.7640 25 1 -4.0468 -12.6616 4.3964 26 1 -3.7158 -11.5902 6.5465 27 6 0.3654 -7.4718 1.8276 28 6 1.8387 -5.3412 2.4472 29 1 -0.3635 1.0277 -0.0005 30 1 -0.3633 -0.5143 -0.8897 31 1 -0.3634 -0.5134 0.8902 32 1 4.9829 -2.2285 0.4301 33 1 6.1359 0.6869 0.3379 34 1 7.0787 -0.8392 0.7667 35 1 6.5516 -1.8067 -1.5181 36 1 5.6086 -0.2809 -1.9469 37 1 1.9099 -2.7080 2.0079 38 1 1.7057 -5.1071 0.2499 39 1 -0.4609 -4.0640 2.2136 40 1 -0.6926 -5.1253 0.7566 41 1 0.4598 -6.9102 4.4063 42 1 -0.9506 -5.8259 4.0348 43 1 -1.7908 -7.3563 2.3158 44 1 -0.0777 -9.4580 3.5569 45 1 -1.0678 -12.2459 5.0977 46 1 0.1041 -7.5125 0.7702 47 1 1.2115 -8.1108 2.0800 48 1 2.6893 -6.0078 2.3050 49 1 1.9477 -4.6924 3.3163 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000964372851.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:37:56 Heat of formation + Delta-G solvation = 81.331602 kcal Electronic energy + Delta-G solvation = -29372.901833 eV Core-core repulsion = 25304.893335 eV Total energy + Delta-G solvation = -4068.008499 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 16.84 seconds Orbital eigenvalues (eV) -45.98087 -41.68051 -40.26779 -38.52532 -37.24559 -35.30404 -34.84662 -33.93673 -33.44638 -31.39051 -29.02679 -26.77063 -26.73179 -26.46533 -25.89958 -25.04149 -23.51808 -23.31257 -21.80582 -21.46864 -20.39620 -19.49993 -19.08080 -18.80320 -18.52436 -17.71314 -17.40134 -16.89170 -16.47815 -16.06469 -16.05449 -15.77034 -15.54994 -15.33982 -15.09603 -14.50137 -14.29802 -14.13666 -13.70512 -13.63285 -13.59483 -13.46986 -13.11632 -13.06223 -12.95461 -12.84348 -12.65769 -12.55602 -12.38066 -12.30629 -12.22791 -12.04021 -11.90460 -11.57222 -11.43536 -11.16361 -11.04846 -10.79528 -10.73952 -10.62503 -10.44390 -10.10138 -8.95332 -7.93675 -5.21322 0.23952 0.71810 1.24360 1.47936 1.48487 1.58512 1.75031 2.21931 2.57353 2.74847 2.89337 3.20043 3.37959 3.50602 3.54500 3.65462 3.73154 3.77601 3.82888 3.87379 3.95146 3.99726 4.02411 4.30527 4.33381 4.37666 4.49739 4.57076 4.63896 4.64260 4.64722 4.68574 4.81907 4.83802 4.88352 4.96717 4.99035 5.02872 5.04458 5.07972 5.11443 5.11718 5.12767 5.27267 5.45997 5.54265 5.61505 5.73426 6.29253 6.41126 7.05545 7.13759 7.34720 8.13352 8.35541 9.29967 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.022511 B = 0.001828 C = 0.001744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.543557 B =15312.770929 C =16051.311522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.037 3.963 3 O 0.093 5.907 4 N -0.373 5.373 5 C 0.084 3.916 6 C -0.111 4.111 7 C -0.148 4.148 8 C -0.158 4.158 9 C -0.273 4.273 10 C 0.608 3.392 11 O -0.566 6.566 12 N -0.689 5.689 13 C 0.129 3.871 14 C -0.116 4.116 15 C -0.090 4.090 16 C -0.137 4.137 17 C 0.146 3.854 18 N -0.729 5.729 19 C -0.240 4.240 20 H 0.077 0.923 21 C -0.080 4.080 22 N -0.971 5.971 23 Si 0.972 3.028 24 H -0.265 1.265 25 H -0.295 1.295 26 H -0.294 1.294 27 C -0.124 4.124 28 C -0.118 4.118 29 H 0.113 0.887 30 H 0.098 0.902 31 H 0.113 0.887 32 H 0.133 0.867 33 H 0.094 0.906 34 H 0.125 0.875 35 H 0.121 0.879 36 H 0.087 0.913 37 H 0.416 0.584 38 H 0.099 0.901 39 H 0.105 0.895 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.071 0.929 44 H 0.373 0.627 45 H 0.250 0.750 46 H 0.066 0.934 47 H 0.073 0.927 48 H 0.075 0.925 49 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.242 28.174 -8.509 31.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.027 4.027 3 O 0.033 5.967 4 N -0.080 5.080 5 C -0.078 4.078 6 C -0.130 4.130 7 C -0.185 4.185 8 C -0.196 4.196 9 C -0.281 4.281 10 C 0.393 3.607 11 O -0.445 6.445 12 N -0.339 5.339 13 C 0.025 3.975 14 C -0.155 4.155 15 C -0.091 4.091 16 C -0.178 4.178 17 C 0.036 3.964 18 N -0.367 5.367 19 C -0.372 4.372 20 H 0.094 0.906 21 C -0.272 4.272 22 N -0.622 5.622 23 Si 0.801 3.199 24 H -0.189 1.189 25 H -0.223 1.223 26 H -0.221 1.221 27 C -0.162 4.162 28 C -0.156 4.156 29 H 0.132 0.868 30 H 0.116 0.884 31 H 0.131 0.869 32 H 0.151 0.849 33 H 0.113 0.887 34 H 0.144 0.856 35 H 0.140 0.860 36 H 0.105 0.895 37 H 0.253 0.747 38 H 0.117 0.883 39 H 0.123 0.877 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.089 0.911 44 H 0.205 0.795 45 H 0.059 0.941 46 H 0.085 0.915 47 H 0.092 0.908 48 H 0.094 0.906 49 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 10.688 28.816 -9.219 32.087 hybrid contribution -0.689 -1.642 0.729 1.924 sum 9.999 27.174 -8.490 30.174 Atomic orbital electron populations 1.20744 0.80463 1.07134 1.05665 1.25223 0.97216 0.84135 0.96106 1.84536 1.10960 1.33253 1.67924 1.73540 0.96474 1.16643 1.21391 1.24029 0.94953 0.88588 1.00220 1.20426 0.84861 1.00121 1.07621 1.23091 0.96490 0.99668 0.99235 1.23119 1.00883 1.04032 0.91567 1.21788 0.93171 0.95055 1.18049 1.16953 0.75635 0.84094 0.83970 1.90826 1.52251 1.68550 1.32890 1.45872 1.68712 1.11185 1.08113 1.22489 0.95744 0.79894 0.99392 1.23169 0.96207 0.96650 0.99452 1.21886 0.97128 0.93199 0.96910 1.23390 0.99298 0.98817 0.96305 1.21937 0.96244 0.84973 0.93204 1.42626 1.06479 1.18670 1.68930 1.19745 0.88109 1.00120 1.29187 0.90555 1.25573 1.00286 0.98234 1.03088 1.69820 1.27701 1.14359 1.50311 0.85089 0.79749 0.77925 0.77119 1.18938 1.22265 1.22136 1.23082 0.98816 0.95171 0.99165 1.23162 0.96795 0.98508 0.97111 0.86807 0.88406 0.86852 0.84877 0.88717 0.85642 0.86033 0.89454 0.74680 0.88270 0.87703 0.91347 0.91683 0.91738 0.91134 0.79531 0.94117 0.91507 0.90834 0.90586 0.87549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.61 10.33 71.23 0.74 0.12 16 2 C 0.04 0.56 7.55 25.48 0.19 0.75 16 3 O 0.09 1.67 11.06 76.97 0.85 2.53 16 4 N -0.37 -7.72 11.71 -44.77 -0.52 -8.24 16 5 C 0.08 1.65 7.08 45.16 0.32 1.97 16 6 C -0.11 -1.81 6.32 -11.54 -0.07 -1.88 16 7 C -0.15 -1.87 10.16 30.60 0.31 -1.56 16 8 C -0.16 -2.23 10.23 30.60 0.31 -1.91 16 9 C -0.27 -5.21 6.24 -18.75 -0.12 -5.33 16 10 C 0.61 12.96 7.63 86.65 0.66 13.63 16 11 O -0.57 -16.97 16.71 -4.08 -0.07 -17.03 16 12 N -0.69 -11.02 5.35 -442.81 -2.37 -13.39 16 13 C 0.13 2.46 4.24 45.63 0.19 2.65 16 14 C -0.12 -2.31 7.64 30.89 0.24 -2.07 16 15 C -0.09 -2.18 1.11 -52.31 -0.06 -2.24 16 16 C -0.14 -4.28 7.64 30.88 0.24 -4.04 16 17 C 0.15 5.56 4.48 45.63 0.20 5.76 16 18 N -0.73 -36.56 5.40 -319.93 -1.73 -38.28 16 19 C -0.24 -13.25 9.97 84.04 0.84 -12.41 16 20 H 0.08 4.05 7.83 -2.91 -0.02 4.02 16 21 C -0.08 -4.59 5.50 84.86 0.47 -4.12 16 22 N -0.97 -59.53 13.06 21.65 0.28 -59.24 16 23 Si 0.97 46.05 29.55 68.60 2.03 48.08 16 24 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 25 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 26 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 27 C -0.12 -3.84 7.59 30.88 0.23 -3.61 16 28 C -0.12 -2.19 7.59 30.89 0.23 -1.95 16 29 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.13 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.09 1.37 7.97 -2.39 -0.02 1.35 16 34 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.42 4.50 8.71 -92.71 -0.81 3.70 16 38 H 0.10 2.33 7.46 -2.39 -0.02 2.31 16 39 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 42 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.07 2.71 8.10 -2.39 -0.02 2.69 16 44 H 0.37 20.12 7.92 -92.71 -0.73 19.39 16 45 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 46 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 47 H 0.07 2.42 8.12 -2.39 -0.02 2.40 16 48 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 49 H 0.11 1.57 8.12 -2.38 -0.02 1.55 16 Total: -1.00 -72.91 413.85 2.84 -70.07 By element: Atomic # 1 Polarization: 32.33 SS G_CDS: -0.56 Total: 31.76 kcal Atomic # 6 Polarization: -21.17 SS G_CDS: 4.93 Total: -16.24 kcal Atomic # 7 Polarization: -114.82 SS G_CDS: -4.34 Total: -119.16 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: 0.78 Total: -14.51 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -72.91 2.84 -70.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000964372851.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.399 kcal (2) G-P(sol) polarization free energy of solvation -72.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 16.84 seconds