Wall clock time and date at job start Wed Apr 1 2020 04:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.37998 * 120.82056 * 2 1 4 4 C 1.39124 * 119.26342 * 179.97438 * 3 2 1 5 5 O 1.35503 * 119.52308 * 179.97438 * 4 3 2 6 6 N 1.32431 * 120.95254 * 359.97438 * 4 3 2 7 7 C 1.31645 * 121.79539 * 359.71087 * 6 4 3 8 8 C 1.50701 * 119.68180 * 180.28994 * 7 6 4 9 9 C 1.39558 * 120.62807 * 0.57660 * 7 6 4 10 10 C 1.47614 * 120.50335 * 179.70385 * 9 7 6 11 11 O 1.21578 * 119.99857 * 269.73253 * 10 9 7 12 12 N 1.34777 * 119.99840 * 89.72574 * 10 9 7 13 13 C 1.46499 * 119.99864 * 180.02562 * 12 10 9 14 14 C 1.53954 * 113.57736 * 252.71908 * 13 12 10 15 15 C 1.52909 * 86.78229 * 220.66660 * 14 13 12 16 16 C 1.52904 * 121.13701 * 150.61827 * 15 14 13 17 17 C 1.53957 * 86.78379 * 100.82200 * 16 15 14 18 18 N 1.46494 * 113.58074 * 139.33414 * 17 16 15 19 19 C 1.36941 * 120.00060 * 107.28120 * 18 17 16 20 20 H 1.08004 * 119.99093 * 359.97438 * 19 18 17 21 21 C 1.38807 * 120.00482 * 180.02562 * 19 18 17 22 22 N 1.31626 * 119.99671 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00434 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47144 * 59.99666 * 23 21 19 25 25 H 1.48493 * 109.47530 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47189 * 300.00167 * 23 21 19 27 27 C 1.52914 * 121.13539 * 259.18248 * 15 14 13 28 28 C 1.52910 * 88.04488 * 24.89888 * 15 14 13 29 29 H 1.09001 * 109.47249 * 270.03026 * 1 2 3 30 30 H 1.08998 * 109.46970 * 30.02679 * 1 2 3 31 31 H 1.08993 * 109.46694 * 150.02430 * 1 2 3 32 32 H 1.08001 * 120.36272 * 359.97438 * 3 2 1 33 33 H 0.96701 * 114.00099 * 89.99760 * 5 4 3 34 34 H 1.09006 * 109.46845 * 270.28484 * 8 7 6 35 35 H 1.08991 * 109.47359 * 30.28913 * 8 7 6 36 36 H 1.09003 * 109.46711 * 150.28949 * 8 7 6 37 37 H 0.97001 * 119.99834 * 0.02562 * 12 10 9 38 38 H 1.09000 * 112.88099 * 23.86148 * 13 12 10 39 39 H 1.08993 * 113.66420 * 335.13515 * 14 13 12 40 40 H 1.08999 * 113.65908 * 106.19209 * 14 13 12 41 41 H 1.09002 * 113.66206 * 215.28772 * 16 15 14 42 42 H 1.08996 * 113.66484 * 346.35212 * 16 15 14 43 43 H 1.08997 * 113.57722 * 270.13442 * 17 16 15 44 44 H 0.97000 * 120.00243 * 287.28168 * 18 17 16 45 45 H 0.96999 * 119.99443 * 179.97438 * 22 21 19 46 46 H 1.09004 * 113.66265 * 13.64736 * 27 15 14 47 47 H 1.09001 * 113.66562 * 144.61610 * 27 15 14 48 48 H 1.09003 * 113.66688 * 220.63288 * 28 15 14 49 49 H 1.08997 * 113.66384 * 89.57526 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2141 1.1851 0.0000 4 6 3.6048 1.1473 0.0005 5 8 4.3043 2.3078 0.0000 6 7 4.2548 -0.0065 0.0016 7 6 3.6205 -1.1600 0.0078 8 6 4.4081 -2.4448 0.0153 9 6 2.2256 -1.2044 0.0014 10 6 1.5171 -2.4994 0.0018 11 8 1.2259 -3.0333 -1.0509 12 7 1.1932 -3.0899 1.1692 13 6 0.4906 -4.3754 1.1696 14 6 -0.9873 -4.2693 1.5878 15 6 -0.7670 -5.5598 2.3778 16 6 -1.5700 -5.8584 3.6443 17 6 -2.4397 -6.7811 2.7710 18 7 -2.8067 -8.0369 3.4302 19 6 -4.0908 -8.2328 3.8639 20 1 -4.8327 -7.4612 3.7202 21 6 -4.4385 -9.4224 4.4890 22 7 -3.5340 -10.3624 4.6644 23 14 -6.1902 -9.6898 5.0799 24 1 -7.1203 -9.6060 3.9253 25 1 -6.3014 -11.0307 5.7082 26 1 -6.5417 -8.6454 6.0754 27 6 -1.2284 -6.9108 1.8298 28 6 0.7176 -5.2009 2.4491 29 1 -0.3634 0.0005 1.0277 30 1 -0.3633 0.8897 -0.5142 31 1 -0.3632 -0.8902 -0.5134 32 1 1.6935 2.1314 -0.0004 33 1 4.5070 2.6453 0.8833 34 1 4.6027 -2.7576 -1.0106 35 1 5.3542 -2.2880 0.5330 36 1 3.8367 -3.2182 0.5287 37 1 1.4253 -2.6638 2.0091 38 1 0.6443 -4.9427 0.2517 39 1 -1.2035 -3.4043 2.2146 40 1 -1.6856 -4.3781 0.7579 41 1 -1.0010 -6.3881 4.4083 42 1 -2.1062 -4.9942 4.0362 43 1 -3.2922 -6.2757 2.3174 44 1 -2.1402 -8.7296 3.5595 45 1 -3.7769 -11.1935 5.1016 46 1 -1.4916 -6.8872 0.7722 47 1 -0.5625 -7.7360 2.0825 48 1 1.3813 -6.0539 2.3074 49 1 0.9806 -4.5977 3.3181 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000965924762.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:09 Heat of formation + Delta-G solvation = 7.282018 kcal Electronic energy + Delta-G solvation = -29460.399162 eV Core-core repulsion = 25389.179633 eV Total energy + Delta-G solvation = -4071.219530 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.43030 -40.46730 -39.21614 -37.58259 -35.92185 -34.78823 -33.73227 -32.59218 -31.76468 -29.56190 -28.54806 -28.21442 -25.83408 -25.28671 -24.72757 -23.90806 -22.44138 -21.80610 -20.93530 -20.13306 -18.92419 -18.21713 -17.67651 -17.66569 -17.00625 -16.63247 -16.13716 -15.30018 -15.10028 -14.80265 -14.68085 -14.51572 -14.25921 -14.06192 -13.80274 -13.67707 -13.46784 -13.28916 -12.82913 -12.75447 -12.63275 -12.57349 -12.43698 -12.37144 -12.17772 -12.09017 -11.70247 -11.37166 -11.01517 -10.92197 -10.72001 -10.57985 -10.30611 -10.09854 -10.03846 -9.86002 -9.81410 -9.74110 -9.40534 -9.28257 -9.18334 -8.86180 -6.95768 -5.78439 -3.06941 0.27877 0.63638 2.20673 2.70868 3.00979 3.15665 3.42811 3.47384 3.48328 3.95147 4.02005 4.27629 4.49337 4.52839 4.55812 4.65772 4.69173 4.73480 4.83067 4.84260 4.97631 5.06461 5.07482 5.18631 5.36935 5.39152 5.40824 5.47843 5.51927 5.63501 5.66446 5.66681 5.74871 5.88197 5.89800 5.93244 5.94752 6.02941 6.16085 6.20086 6.34806 6.40085 6.42897 6.61871 6.90552 6.93582 7.11699 7.19755 7.37723 7.68710 7.86707 8.40491 9.51337 10.10079 10.44315 11.43925 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.028016 B = 0.001779 C = 0.001730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.177631 B =15737.063918 C =16176.773376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.014 3.986 3 C -0.197 4.197 4 C 0.333 3.667 5 O -0.481 6.481 6 N -0.507 5.507 7 C 0.195 3.805 8 C -0.113 4.113 9 C -0.194 4.194 10 C 0.573 3.427 11 O -0.525 6.525 12 N -0.709 5.709 13 C 0.121 3.879 14 C -0.124 4.124 15 C -0.101 4.101 16 C -0.148 4.148 17 C 0.169 3.831 18 N -0.713 5.713 19 C -0.243 4.243 20 H 0.070 0.930 21 C -0.014 4.014 22 N -0.933 5.933 23 Si 0.907 3.093 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C -0.129 4.129 28 C -0.130 4.130 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.147 0.853 33 H 0.404 0.596 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.401 0.599 38 H 0.116 0.884 39 H 0.083 0.917 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.054 0.946 43 H 0.074 0.926 44 H 0.385 0.615 45 H 0.256 0.744 46 H 0.061 0.939 47 H 0.082 0.918 48 H 0.074 0.926 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.505 24.540 -6.760 29.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.006 3.994 3 C -0.218 4.218 4 C 0.154 3.846 5 O -0.288 6.288 6 N -0.227 5.227 7 C 0.057 3.943 8 C -0.170 4.170 9 C -0.199 4.199 10 C 0.357 3.643 11 O -0.401 6.401 12 N -0.359 5.359 13 C 0.017 3.983 14 C -0.162 4.162 15 C -0.103 4.103 16 C -0.190 4.190 17 C 0.057 3.943 18 N -0.351 5.351 19 C -0.374 4.374 20 H 0.088 0.912 21 C -0.210 4.210 22 N -0.581 5.581 23 Si 0.738 3.262 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 C -0.168 4.168 28 C -0.168 4.168 29 H 0.105 0.895 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.165 0.835 33 H 0.262 0.738 34 H 0.107 0.893 35 H 0.105 0.895 36 H 0.098 0.902 37 H 0.236 0.764 38 H 0.134 0.866 39 H 0.102 0.898 40 H 0.091 0.909 41 H 0.097 0.903 42 H 0.072 0.928 43 H 0.092 0.908 44 H 0.219 0.781 45 H 0.066 0.934 46 H 0.079 0.921 47 H 0.100 0.900 48 H 0.093 0.907 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 15.949 24.125 -8.080 30.028 hybrid contribution -1.310 0.123 1.307 1.855 sum 14.639 24.248 -6.773 29.123 Atomic orbital electron populations 1.20974 0.89111 1.04499 1.03725 1.20230 0.97059 0.90805 0.91325 1.21899 0.93731 0.99443 1.06713 1.19255 0.87051 0.85053 0.93217 1.84737 1.75974 1.33978 1.34126 1.67001 1.41841 0.97839 1.16032 1.21058 0.89119 0.93210 0.90957 1.20879 1.00453 0.91412 1.04240 1.20727 0.94862 0.94435 1.09902 1.17902 0.78147 0.83800 0.84428 1.90846 1.53708 1.64351 1.31209 1.46145 1.58882 1.22908 1.07993 1.22737 0.92175 0.83366 1.00040 1.23140 0.96022 0.97328 0.99754 1.22068 0.94008 0.95010 0.99180 1.23642 0.98920 1.00543 0.95854 1.21534 0.92976 0.88271 0.91564 1.42408 1.09958 1.14615 1.68130 1.19263 0.87435 0.99837 1.30908 0.91188 1.24760 0.97800 0.96676 1.01723 1.69653 1.32783 1.07182 1.48491 0.86266 0.84461 0.76934 0.78512 1.21259 1.21697 1.21279 1.23221 0.99594 0.94429 0.99550 1.23183 0.97729 0.99508 0.96370 0.89526 0.90072 0.90174 0.83516 0.73798 0.89310 0.89523 0.90208 0.76448 0.86597 0.89834 0.90851 0.90289 0.92757 0.90825 0.78112 0.93444 0.92054 0.89998 0.90704 0.89832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.83 9.69 36.01 0.35 -0.48 16 2 C 0.01 0.11 5.95 -103.95 -0.62 -0.51 16 3 C -0.20 -1.45 9.73 -39.34 -0.38 -1.83 16 4 C 0.33 2.92 7.74 -16.96 -0.13 2.79 16 5 O -0.48 -3.39 13.55 -18.20 -0.25 -3.63 16 6 N -0.51 -5.25 10.29 -9.20 -0.09 -5.34 16 7 C 0.20 1.90 6.82 -82.18 -0.56 1.34 16 8 C -0.11 -0.90 9.78 36.01 0.35 -0.55 16 9 C -0.19 -1.87 5.65 -104.83 -0.59 -2.46 16 10 C 0.57 6.17 4.33 -12.43 -0.05 6.11 16 11 O -0.53 -7.74 16.71 5.30 0.09 -7.65 16 12 N -0.71 -6.20 5.35 -53.86 -0.29 -6.48 16 13 C 0.12 1.25 4.24 -66.94 -0.28 0.97 16 14 C -0.12 -1.39 7.64 -26.28 -0.20 -1.59 16 15 C -0.10 -1.32 1.11 -154.71 -0.17 -1.49 16 16 C -0.15 -2.41 7.64 -26.28 -0.20 -2.61 16 17 C 0.17 3.24 4.48 -66.95 -0.30 2.94 16 18 N -0.71 -17.61 5.40 -52.47 -0.28 -17.89 16 19 C -0.24 -6.69 9.97 -15.06 -0.15 -6.84 16 20 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 21 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 22 N -0.93 -27.94 13.06 55.49 0.72 -27.21 16 23 Si 0.91 22.20 29.55 -169.99 -5.02 17.17 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 26 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 27 C -0.13 -2.03 7.59 -26.28 -0.20 -2.23 16 28 C -0.13 -1.35 7.59 -26.28 -0.20 -1.55 16 29 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.41 8.10 -51.93 -0.42 -0.01 16 31 H 0.08 0.68 7.18 -51.93 -0.37 0.30 16 32 H 0.15 0.72 8.06 -52.49 -0.42 0.30 16 33 H 0.40 0.72 9.06 45.56 0.41 1.13 16 34 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.60 7.06 -51.93 -0.37 0.23 16 37 H 0.40 2.61 8.71 -40.82 -0.36 2.26 16 38 H 0.12 1.40 7.47 -51.93 -0.39 1.01 16 39 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 42 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.07 1.43 8.10 -51.93 -0.42 1.01 16 44 H 0.38 10.08 7.92 -40.82 -0.32 9.76 16 45 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 46 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 47 H 0.08 1.34 8.12 -51.93 -0.42 0.92 16 48 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 49 H 0.08 0.76 8.12 -51.93 -0.42 0.34 16 LS Contribution 407.97 15.07 6.15 6.15 Total: -1.00 -34.42 407.97 -9.27 -43.69 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -6.85 Total: 9.66 kcal Atomic # 6 Polarization: -5.03 SS G_CDS: -3.44 Total: -8.46 kcal Atomic # 7 Polarization: -56.98 SS G_CDS: 0.06 Total: -56.92 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: -0.16 Total: -11.29 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -34.42 -9.27 -43.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000965924762.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.973 kcal (2) G-P(sol) polarization free energy of solvation -34.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds