Wall clock time and date at job start Wed Apr 1 2020 04:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.37998 * 120.82056 * 2 1 4 4 C 1.39124 * 119.26342 * 179.97438 * 3 2 1 5 5 O 1.35503 * 119.52308 * 179.97438 * 4 3 2 6 6 N 1.32431 * 120.95254 * 359.97438 * 4 3 2 7 7 C 1.31645 * 121.79539 * 359.71087 * 6 4 3 8 8 C 1.50701 * 119.68180 * 180.28994 * 7 6 4 9 9 C 1.39558 * 120.62807 * 0.57660 * 7 6 4 10 10 C 1.47614 * 120.50335 * 179.70385 * 9 7 6 11 11 O 1.21578 * 119.99857 * 269.73253 * 10 9 7 12 12 N 1.34777 * 119.99840 * 89.72574 * 10 9 7 13 13 C 1.46499 * 119.99864 * 180.02562 * 12 10 9 14 14 C 1.53954 * 113.57736 * 252.71908 * 13 12 10 15 15 C 1.52909 * 86.78229 * 220.66660 * 14 13 12 16 16 C 1.52904 * 121.13701 * 150.61827 * 15 14 13 17 17 C 1.53957 * 86.78379 * 100.82200 * 16 15 14 18 18 N 1.46494 * 113.58074 * 139.33414 * 17 16 15 19 19 C 1.36941 * 120.00060 * 107.28120 * 18 17 16 20 20 H 1.08004 * 119.99093 * 359.97438 * 19 18 17 21 21 C 1.38807 * 120.00482 * 180.02562 * 19 18 17 22 22 N 1.31626 * 119.99671 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00434 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47144 * 59.99666 * 23 21 19 25 25 H 1.48493 * 109.47530 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47189 * 300.00167 * 23 21 19 27 27 C 1.52914 * 121.13539 * 259.18248 * 15 14 13 28 28 C 1.52910 * 88.04488 * 24.89888 * 15 14 13 29 29 H 1.09001 * 109.47249 * 270.03026 * 1 2 3 30 30 H 1.08998 * 109.46970 * 30.02679 * 1 2 3 31 31 H 1.08993 * 109.46694 * 150.02430 * 1 2 3 32 32 H 1.08001 * 120.36272 * 359.97438 * 3 2 1 33 33 H 0.96701 * 114.00099 * 89.99760 * 5 4 3 34 34 H 1.09006 * 109.46845 * 270.28484 * 8 7 6 35 35 H 1.08991 * 109.47359 * 30.28913 * 8 7 6 36 36 H 1.09003 * 109.46711 * 150.28949 * 8 7 6 37 37 H 0.97001 * 119.99834 * 0.02562 * 12 10 9 38 38 H 1.09000 * 112.88099 * 23.86148 * 13 12 10 39 39 H 1.08993 * 113.66420 * 335.13515 * 14 13 12 40 40 H 1.08999 * 113.65908 * 106.19209 * 14 13 12 41 41 H 1.09002 * 113.66206 * 215.28772 * 16 15 14 42 42 H 1.08996 * 113.66484 * 346.35212 * 16 15 14 43 43 H 1.08997 * 113.57722 * 270.13442 * 17 16 15 44 44 H 0.97000 * 120.00243 * 287.28168 * 18 17 16 45 45 H 0.96999 * 119.99443 * 179.97438 * 22 21 19 46 46 H 1.09004 * 113.66265 * 13.64736 * 27 15 14 47 47 H 1.09001 * 113.66562 * 144.61610 * 27 15 14 48 48 H 1.09003 * 113.66688 * 220.63288 * 28 15 14 49 49 H 1.08997 * 113.66384 * 89.57526 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2141 1.1851 0.0000 4 6 3.6048 1.1473 0.0005 5 8 4.3043 2.3078 0.0000 6 7 4.2548 -0.0065 0.0016 7 6 3.6205 -1.1600 0.0078 8 6 4.4081 -2.4448 0.0153 9 6 2.2256 -1.2044 0.0014 10 6 1.5171 -2.4994 0.0018 11 8 1.2259 -3.0333 -1.0509 12 7 1.1932 -3.0899 1.1692 13 6 0.4906 -4.3754 1.1696 14 6 -0.9873 -4.2693 1.5878 15 6 -0.7670 -5.5598 2.3778 16 6 -1.5700 -5.8584 3.6443 17 6 -2.4397 -6.7811 2.7710 18 7 -2.8067 -8.0369 3.4302 19 6 -4.0908 -8.2328 3.8639 20 1 -4.8327 -7.4612 3.7202 21 6 -4.4385 -9.4224 4.4890 22 7 -3.5340 -10.3624 4.6644 23 14 -6.1902 -9.6898 5.0799 24 1 -7.1203 -9.6060 3.9253 25 1 -6.3014 -11.0307 5.7082 26 1 -6.5417 -8.6454 6.0754 27 6 -1.2284 -6.9108 1.8298 28 6 0.7176 -5.2009 2.4491 29 1 -0.3634 0.0005 1.0277 30 1 -0.3633 0.8897 -0.5142 31 1 -0.3632 -0.8902 -0.5134 32 1 1.6935 2.1314 -0.0004 33 1 4.5070 2.6453 0.8833 34 1 4.6027 -2.7576 -1.0106 35 1 5.3542 -2.2880 0.5330 36 1 3.8367 -3.2182 0.5287 37 1 1.4253 -2.6638 2.0091 38 1 0.6443 -4.9427 0.2517 39 1 -1.2035 -3.4043 2.2146 40 1 -1.6856 -4.3781 0.7579 41 1 -1.0010 -6.3881 4.4083 42 1 -2.1062 -4.9942 4.0362 43 1 -3.2922 -6.2757 2.3174 44 1 -2.1402 -8.7296 3.5595 45 1 -3.7769 -11.1935 5.1016 46 1 -1.4916 -6.8872 0.7722 47 1 -0.5625 -7.7360 2.0825 48 1 1.3813 -6.0539 2.3074 49 1 0.9806 -4.5977 3.3181 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000965924762.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:08 Heat of formation + Delta-G solvation = -19.217670 kcal Electronic energy + Delta-G solvation = -29461.548275 eV Core-core repulsion = 25389.179633 eV Total energy + Delta-G solvation = -4072.368642 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.14655 -41.45160 -40.12374 -38.19220 -37.20985 -35.39279 -35.25018 -33.78635 -32.66705 -31.33268 -29.09535 -28.87109 -26.74402 -26.64072 -26.09559 -25.18518 -23.50578 -22.41114 -21.79890 -21.45756 -19.55045 -19.43073 -18.88141 -18.44918 -18.29244 -17.51890 -16.88314 -16.74342 -16.10597 -15.93814 -15.74154 -15.47170 -15.26082 -15.15745 -14.84599 -14.44637 -14.30160 -14.20168 -13.88370 -13.61816 -13.59253 -13.44764 -13.35452 -13.16044 -13.07258 -12.95361 -12.93615 -12.78786 -12.63428 -12.34261 -12.27055 -12.08066 -11.89032 -11.49585 -11.15663 -11.03640 -10.78155 -10.76123 -10.63701 -10.51407 -10.06491 -9.91873 -8.95002 -7.93084 -5.20901 -0.34752 0.02900 1.38100 1.47826 1.50624 1.56737 2.01274 2.36041 2.56271 2.57759 3.36728 3.38115 3.43640 3.51720 3.54751 3.59891 3.73553 3.83853 3.97924 4.02688 4.16444 4.26889 4.30998 4.36920 4.39427 4.49486 4.55053 4.56987 4.64124 4.64235 4.81561 4.82850 4.84988 4.96422 4.97414 5.03308 5.05050 5.07883 5.10048 5.12547 5.14837 5.27962 5.39675 5.45992 5.55793 5.62423 5.73668 6.29438 6.44148 6.53948 6.78850 7.09718 7.35012 8.13720 8.36083 9.30031 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.028016 B = 0.001779 C = 0.001730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.177631 B =15737.063918 C =16176.773376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.012 3.988 3 C -0.190 4.190 4 C 0.328 3.672 5 O -0.489 6.489 6 N -0.532 5.532 7 C 0.186 3.814 8 C -0.111 4.111 9 C -0.208 4.208 10 C 0.581 3.419 11 O -0.570 6.570 12 N -0.692 5.692 13 C 0.129 3.871 14 C -0.118 4.118 15 C -0.090 4.090 16 C -0.137 4.137 17 C 0.145 3.855 18 N -0.729 5.729 19 C -0.243 4.243 20 H 0.075 0.925 21 C -0.078 4.078 22 N -0.970 5.970 23 Si 0.972 3.028 24 H -0.279 1.279 25 H -0.297 1.297 26 H -0.277 1.277 27 C -0.124 4.124 28 C -0.117 4.117 29 H 0.104 0.896 30 H 0.098 0.902 31 H 0.058 0.942 32 H 0.175 0.825 33 H 0.425 0.575 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.082 0.918 37 H 0.416 0.584 38 H 0.099 0.901 39 H 0.103 0.897 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.069 0.931 44 H 0.373 0.627 45 H 0.250 0.750 46 H 0.065 0.935 47 H 0.074 0.926 48 H 0.076 0.924 49 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.592 27.370 -6.303 32.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.004 3.996 3 C -0.211 4.211 4 C 0.149 3.851 5 O -0.300 6.300 6 N -0.253 5.253 7 C 0.047 3.953 8 C -0.168 4.168 9 C -0.214 4.214 10 C 0.367 3.633 11 O -0.449 6.449 12 N -0.343 5.343 13 C 0.025 3.975 14 C -0.156 4.156 15 C -0.091 4.091 16 C -0.178 4.178 17 C 0.036 3.964 18 N -0.367 5.367 19 C -0.375 4.375 20 H 0.093 0.907 21 C -0.270 4.270 22 N -0.621 5.621 23 Si 0.801 3.199 24 H -0.205 1.205 25 H -0.223 1.223 26 H -0.203 1.203 27 C -0.162 4.162 28 C -0.155 4.155 29 H 0.123 0.877 30 H 0.117 0.883 31 H 0.077 0.923 32 H 0.192 0.808 33 H 0.287 0.713 34 H 0.102 0.898 35 H 0.114 0.886 36 H 0.101 0.899 37 H 0.253 0.747 38 H 0.117 0.883 39 H 0.122 0.878 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.087 0.913 44 H 0.205 0.795 45 H 0.059 0.941 46 H 0.084 0.916 47 H 0.092 0.908 48 H 0.095 0.905 49 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 16.055 27.039 -7.599 32.352 hybrid contribution -1.292 -0.625 1.123 1.822 sum 14.763 26.414 -6.476 30.945 Atomic orbital electron populations 1.21013 0.87916 1.04322 1.04807 1.20476 0.97928 0.90551 0.90606 1.22122 0.93183 1.00239 1.05556 1.19511 0.87802 0.85068 0.92670 1.84690 1.75867 1.33245 1.36170 1.67012 1.42600 0.98477 1.17178 1.21229 0.89366 0.93576 0.91115 1.20893 1.00875 0.91002 1.04076 1.20669 0.94915 0.94299 1.11478 1.18023 0.77403 0.83886 0.84022 1.90826 1.55645 1.65588 1.32841 1.45949 1.57909 1.22133 1.08276 1.22459 0.91885 0.83844 0.99353 1.23168 0.96338 0.96730 0.99377 1.21881 0.96010 0.94367 0.96819 1.23389 0.98438 0.99632 0.96334 1.21935 0.94270 0.86955 0.93234 1.42603 1.08884 1.16241 1.68947 1.19671 0.88676 0.99664 1.29513 0.90659 1.25565 1.01662 0.96800 1.02990 1.69813 1.34632 1.07525 1.50120 0.85226 0.80028 0.76488 0.78120 1.20542 1.22287 1.20324 1.23085 0.97856 0.96200 0.99096 1.23158 0.95421 0.99785 0.97138 0.87722 0.88289 0.92259 0.80805 0.71277 0.89849 0.88560 0.89924 0.74702 0.88278 0.87847 0.91616 0.91631 0.91833 0.91279 0.79510 0.94107 0.91614 0.90779 0.90503 0.87478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.32 9.69 71.24 0.69 -0.63 16 2 C 0.01 0.18 5.95 -19.43 -0.12 0.06 16 3 C -0.19 -2.31 9.73 22.43 0.22 -2.09 16 4 C 0.33 5.14 7.74 84.82 0.66 5.80 16 5 O -0.49 -5.88 13.55 -88.04 -1.19 -7.07 16 6 N -0.53 -10.40 10.29 -295.89 -3.04 -13.45 16 7 C 0.19 3.45 6.82 42.91 0.29 3.74 16 8 C -0.11 -1.71 9.78 71.24 0.70 -1.01 16 9 C -0.21 -3.75 5.65 -20.00 -0.11 -3.86 16 10 C 0.58 11.89 4.33 86.72 0.38 12.27 16 11 O -0.57 -16.74 16.71 -3.96 -0.07 -16.80 16 12 N -0.69 -10.64 5.35 -442.59 -2.37 -13.01 16 13 C 0.13 2.43 4.24 45.63 0.19 2.62 16 14 C -0.12 -2.37 7.64 30.89 0.24 -2.13 16 15 C -0.09 -2.18 1.11 -52.31 -0.06 -2.23 16 16 C -0.14 -4.29 7.64 30.89 0.24 -4.05 16 17 C 0.15 5.58 4.48 45.63 0.20 5.79 16 18 N -0.73 -36.66 5.40 -319.92 -1.73 -38.39 16 19 C -0.24 -13.50 9.97 84.03 0.84 -12.66 16 20 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 21 C -0.08 -4.49 5.50 84.86 0.47 -4.02 16 22 N -0.97 -59.44 13.06 21.65 0.28 -59.16 16 23 Si 0.97 46.04 29.55 68.60 2.03 48.07 16 24 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 25 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 26 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 27 C -0.12 -3.86 7.59 30.89 0.23 -3.63 16 28 C -0.12 -2.14 7.59 30.89 0.23 -1.90 16 29 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.10 0.69 8.10 -2.39 -0.02 0.67 16 31 H 0.06 0.91 7.18 -2.39 -0.02 0.90 16 32 H 0.17 1.07 8.06 -2.91 -0.02 1.05 16 33 H 0.42 0.55 9.06 -74.06 -0.67 -0.12 16 34 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 35 H 0.10 1.23 8.14 -2.39 -0.02 1.22 16 36 H 0.08 1.17 7.06 -2.39 -0.02 1.15 16 37 H 0.42 4.15 8.71 -92.71 -0.81 3.34 16 38 H 0.10 2.31 7.47 -2.39 -0.02 2.29 16 39 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 42 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.07 2.68 8.10 -2.39 -0.02 2.66 16 44 H 0.37 20.16 7.92 -92.71 -0.73 19.43 16 45 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 46 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 47 H 0.07 2.44 8.12 -2.39 -0.02 2.42 16 48 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 49 H 0.11 1.53 8.12 -2.39 -0.02 1.51 16 Total: -1.00 -75.88 407.97 -2.01 -77.90 By element: Atomic # 1 Polarization: 31.08 SS G_CDS: -1.21 Total: 29.86 kcal Atomic # 6 Polarization: -13.24 SS G_CDS: 5.29 Total: -7.95 kcal Atomic # 7 Polarization: -117.14 SS G_CDS: -6.86 Total: -124.00 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: -1.26 Total: -23.87 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Total: -75.88 -2.01 -77.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000965924762.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.678 kcal (2) G-P(sol) polarization free energy of solvation -75.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds