Wall clock time and date at job start Wed Apr 1 2020 03:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38626 * 120.75695 * 2 1 4 4 C 1.38556 * 119.35239 * 179.97438 * 3 2 1 5 5 C 1.50702 * 119.55052 * 179.97438 * 4 3 2 6 6 N 1.31531 * 120.90318 * 359.97435 * 4 3 2 7 7 C 1.32714 * 121.63956 * 0.02722 * 6 4 3 8 8 C 1.48171 * 119.71737 * 179.97438 * 7 6 4 9 9 O 1.21519 * 120.00105 * 179.97438 * 8 7 6 10 10 N 1.34777 * 120.00545 * 359.97438 * 8 7 6 11 11 C 1.47100 * 125.62690 * 359.97438 * 10 8 7 12 12 C 1.54455 * 107.29474 * 181.00887 * 11 10 8 13 13 C 1.54647 * 102.90483 * 21.48911 * 12 11 10 14 14 C 1.47570 * 125.63795 * 180.02562 * 10 8 7 15 15 C 1.52361 * 110.53653 * 207.65302 * 13 12 11 16 16 N 1.47332 * 108.39942 * 186.24728 * 15 13 12 17 17 C 1.36935 * 121.08095 * 229.18070 * 16 15 13 18 18 H 1.07999 * 120.00116 * 153.75719 * 17 16 15 19 19 C 1.38810 * 119.99984 * 333.75819 * 17 16 15 20 20 N 1.31612 * 119.99839 * 344.13925 * 19 17 16 21 21 Si 1.86806 * 119.99894 * 164.14043 * 19 17 16 22 22 H 1.48495 * 109.47262 * 90.00053 * 21 19 17 23 23 H 1.48499 * 109.46603 * 209.99889 * 21 19 17 24 24 H 1.48501 * 109.47101 * 329.99599 * 21 19 17 25 25 C 1.47169 * 117.84218 * 49.19846 * 16 15 13 26 26 C 1.53283 * 108.57029 * 308.78041 * 25 16 15 27 27 O 1.41881 * 110.77613 * 83.62604 * 13 12 11 28 28 C 1.38590 * 120.75408 * 180.26815 * 2 1 3 29 29 H 1.09003 * 109.46989 * 90.00593 * 1 2 3 30 30 H 1.09000 * 109.47173 * 210.00261 * 1 2 3 31 31 H 1.08995 * 109.47510 * 330.00867 * 1 2 3 32 32 H 1.07994 * 120.32256 * 359.97017 * 3 2 1 33 33 H 1.08997 * 109.46896 * 269.98066 * 5 4 3 34 34 H 1.09009 * 109.46782 * 29.97661 * 5 4 3 35 35 H 1.08998 * 109.47380 * 149.97536 * 5 4 3 36 36 H 1.08995 * 109.88087 * 300.44283 * 11 10 8 37 37 H 1.09004 * 109.87377 * 61.58617 * 11 10 8 38 38 H 1.09004 * 110.73217 * 139.82832 * 12 11 10 39 39 H 1.09004 * 110.73913 * 262.95979 * 12 11 10 40 40 H 1.08997 * 110.37768 * 275.50430 * 14 10 8 41 41 H 1.09003 * 110.37150 * 37.73543 * 14 10 8 42 42 H 1.09000 * 109.68253 * 305.97626 * 15 13 12 43 43 H 1.09006 * 109.68215 * 66.48351 * 15 13 12 44 44 H 0.97008 * 119.99960 * 180.02562 * 20 19 17 45 45 H 1.09003 * 109.62233 * 68.50410 * 25 16 15 46 46 H 1.09003 * 109.62216 * 188.87027 * 25 16 15 47 47 H 1.08995 * 109.51288 * 172.90918 * 26 25 16 48 48 H 1.09002 * 109.50861 * 293.05740 * 26 25 16 49 49 H 1.08006 * 120.47566 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2159 1.1913 0.0000 4 6 3.6011 1.1573 0.0005 5 6 4.3762 2.4497 0.0000 6 7 4.2487 0.0125 0.0016 7 6 3.6081 -1.1498 0.0016 8 6 4.3806 -2.4142 0.0022 9 8 3.7993 -3.4813 0.0026 10 7 5.7279 -2.3809 0.0022 11 6 6.5550 -1.1645 0.0011 12 6 8.0325 -1.6138 -0.0244 13 6 7.9467 -3.0512 -0.5884 14 6 6.6171 -3.5586 0.0022 15 6 9.1117 -3.8936 -0.0841 16 7 9.0696 -5.2000 -0.7642 17 6 9.1613 -6.3686 -0.0564 18 1 8.7241 -7.2742 -0.4503 19 6 9.8162 -6.3894 1.1673 20 7 10.6083 -5.3947 1.5067 21 14 9.5731 -7.8292 2.3324 22 1 10.5920 -8.8719 2.0502 23 1 9.7186 -7.3615 3.7343 24 1 8.2153 -8.3987 2.1390 25 6 8.9262 -5.2081 -2.2288 26 6 7.7341 -4.3220 -2.6075 27 8 7.8951 -3.0333 -2.0062 28 6 2.2157 -1.1910 -0.0056 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5137 32 1 1.6937 2.1365 -0.0005 33 1 4.5638 2.7604 -1.0278 34 1 3.7994 3.2195 0.5127 35 1 5.3260 2.3040 0.5146 36 1 6.3339 -0.5667 -0.8832 37 1 6.3599 -0.5829 0.9022 38 1 8.6188 -0.9749 -0.6849 39 1 8.4528 -1.6156 0.9813 40 1 6.7676 -3.9206 1.0192 41 1 6.2008 -4.3484 -0.6232 42 1 10.0526 -3.3921 -0.3107 43 1 9.0223 -4.0368 0.9928 44 1 11.0663 -5.4094 2.3617 45 1 9.8340 -4.8161 -2.6877 46 1 8.7524 -6.2273 -2.5740 47 1 7.6897 -4.2152 -3.6913 48 1 6.8122 -4.7790 -2.2479 49 1 1.6959 -2.1377 -0.0104 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972437287.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:55 Heat of formation + Delta-G solvation = -6.249379 kcal Electronic energy + Delta-G solvation = -31421.990175 eV Core-core repulsion = 27350.183880 eV Total energy + Delta-G solvation = -4071.806295 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -40.89791 -39.80747 -38.33589 -36.08729 -34.50061 -34.38698 -33.00076 -31.56542 -31.17755 -28.98236 -28.28203 -27.92543 -27.51351 -26.08673 -24.20538 -23.22403 -22.67247 -21.44847 -20.96913 -19.55666 -18.72835 -17.49344 -16.99981 -16.49032 -16.24320 -15.94044 -15.48940 -15.32072 -14.85152 -14.61673 -14.32862 -14.11244 -14.02610 -13.65118 -13.55172 -13.43573 -13.13307 -13.07471 -12.88862 -12.80660 -12.63712 -12.40987 -12.36566 -12.01986 -11.87187 -11.74147 -11.25211 -11.04790 -10.93705 -10.79724 -10.70348 -10.43477 -10.27059 -10.15187 -9.89334 -9.75286 -9.53524 -9.40344 -9.17987 -9.02197 -8.52676 -8.24855 -6.72894 -5.83339 -3.25950 0.53346 0.97931 2.77872 3.11235 3.36381 3.43694 3.46997 3.74131 3.91716 4.26786 4.28990 4.42019 4.47144 4.72915 4.82915 4.94302 5.04160 5.07128 5.16179 5.18222 5.30226 5.34402 5.35005 5.42620 5.43805 5.52097 5.52714 5.71774 5.75392 5.82291 5.85105 5.92343 5.99098 6.03178 6.12154 6.17923 6.28634 6.34826 6.39108 6.40766 6.53572 6.60454 6.69914 6.81719 7.07664 7.44300 7.60757 7.73717 7.76493 7.97121 8.31332 8.33713 9.12382 9.75076 10.32465 11.25185 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015949 B = 0.002969 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.124731 B = 9429.659699 C = 9873.117889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.048 4.048 3 C -0.157 4.157 4 C 0.126 3.874 5 C -0.103 4.103 6 N -0.455 5.455 7 C 0.100 3.900 8 C 0.576 3.424 9 O -0.541 6.541 10 N -0.589 5.589 11 C 0.125 3.875 12 C -0.122 4.122 13 C 0.086 3.914 14 C 0.093 3.907 15 C 0.164 3.836 16 N -0.595 5.595 17 C -0.251 4.251 18 H 0.068 0.932 19 C 0.003 3.997 20 N -0.905 5.905 21 Si 0.902 3.098 22 H -0.287 1.287 23 H -0.289 1.289 24 H -0.278 1.278 25 C 0.110 3.890 26 C 0.044 3.956 27 O -0.373 6.373 28 C -0.122 4.122 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.137 0.863 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.034 0.966 43 H 0.097 0.903 44 H 0.255 0.745 45 H 0.027 0.973 46 H 0.062 0.938 47 H 0.082 0.918 48 H 0.047 0.953 49 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.502 17.119 -3.302 23.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.055 4.055 3 C -0.177 4.177 4 C -0.014 4.014 5 C -0.160 4.160 6 N -0.168 5.168 7 C -0.038 4.038 8 C 0.363 3.637 9 O -0.418 6.418 10 N -0.320 5.320 11 C 0.002 3.998 12 C -0.161 4.161 13 C 0.044 3.956 14 C -0.028 4.028 15 C 0.038 3.962 16 N -0.319 5.319 17 C -0.380 4.380 18 H 0.086 0.914 19 C -0.196 4.196 20 N -0.549 5.549 21 Si 0.732 3.268 22 H -0.213 1.213 23 H -0.215 1.215 24 H -0.204 1.204 25 C -0.016 4.016 26 C -0.034 4.034 27 O -0.292 6.292 28 C -0.143 4.143 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.154 0.846 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.106 0.894 39 H 0.108 0.892 40 H 0.099 0.901 41 H 0.102 0.898 42 H 0.052 0.948 43 H 0.115 0.885 44 H 0.065 0.935 45 H 0.045 0.955 46 H 0.081 0.919 47 H 0.100 0.900 48 H 0.065 0.935 49 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -14.844 16.668 -3.240 22.554 hybrid contribution -0.939 -0.983 0.722 1.539 sum -15.783 15.686 -2.518 22.393 Atomic orbital electron populations 1.20827 0.89743 1.03535 1.03084 1.20323 0.97036 0.92523 0.95667 1.22027 0.94839 0.98733 1.02141 1.21374 0.91161 0.94004 0.94839 1.20726 1.00474 0.91511 1.03320 1.67716 1.40341 0.97476 1.11305 1.21131 0.91508 0.92070 0.99128 1.17494 0.80981 0.87338 0.77894 1.90784 1.69181 1.30131 1.51736 1.48419 1.04364 1.09605 1.69648 1.22089 0.88990 0.86353 1.02338 1.22706 0.95784 0.95519 1.02048 1.22762 0.95366 0.95699 0.81785 1.22819 0.89709 0.87952 1.02346 1.21172 0.91805 0.84177 0.99059 1.44124 1.85732 1.02410 0.99657 1.19174 1.29148 0.88317 1.01353 0.91388 1.25020 0.96601 0.97888 1.00061 1.69998 1.29716 1.32687 1.22541 0.86295 0.78108 0.82001 0.80425 1.21346 1.21473 1.20363 1.21587 0.95180 0.97952 0.86889 1.23099 0.98823 0.84849 0.96581 1.87626 1.94024 1.28938 1.18583 1.21985 0.93792 0.99536 0.99014 0.90335 0.90711 0.90888 0.84564 0.90209 0.90703 0.90062 0.90709 0.91095 0.89385 0.89173 0.90116 0.89839 0.94813 0.88473 0.93517 0.95538 0.91904 0.89958 0.93525 0.83584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.72 10.06 36.01 0.36 -0.36 16 2 C -0.05 -0.46 5.91 -104.35 -0.62 -1.07 16 3 C -0.16 -1.38 9.45 -39.32 -0.37 -1.75 16 4 C 0.13 1.30 6.78 -82.60 -0.56 0.74 16 5 C -0.10 -0.72 10.17 36.01 0.37 -0.35 16 6 N -0.46 -6.08 6.76 -6.06 -0.04 -6.12 16 7 C 0.10 1.50 6.72 -83.01 -0.56 0.94 16 8 C 0.58 10.55 7.84 -12.18 -0.10 10.45 16 9 O -0.54 -11.33 16.59 5.35 0.09 -11.24 16 10 N -0.59 -10.63 3.33 -171.77 -0.57 -11.21 16 11 C 0.13 1.91 5.41 -2.95 -0.02 1.90 16 12 C -0.12 -1.95 6.13 -25.10 -0.15 -2.11 16 13 C 0.09 1.68 0.84 -89.52 -0.08 1.61 16 14 C 0.09 1.88 5.84 -2.89 -0.02 1.86 16 15 C 0.16 3.83 4.08 -3.91 -0.02 3.82 16 16 N -0.60 -14.82 2.98 -172.24 -0.51 -15.34 16 17 C -0.25 -6.80 9.66 -15.06 -0.15 -6.95 16 18 H 0.07 1.82 7.88 -52.49 -0.41 1.41 16 19 C 0.00 0.07 4.98 -17.43 -0.09 -0.01 16 20 N -0.90 -25.63 11.11 55.49 0.62 -25.01 16 21 Si 0.90 21.66 29.58 -169.99 -5.03 16.63 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 C 0.11 2.34 6.71 -3.53 -0.02 2.32 16 26 C 0.04 0.84 6.78 37.30 0.25 1.09 16 27 O -0.37 -7.42 10.28 -35.22 -0.36 -7.79 16 28 C -0.12 -1.55 9.34 -39.05 -0.36 -1.91 16 29 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.45 8.10 -51.93 -0.42 0.03 16 31 H 0.07 0.34 8.10 -51.93 -0.42 -0.08 16 32 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.36 8.08 -51.92 -0.42 -0.06 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 1.13 7.42 -51.93 -0.39 0.75 16 37 H 0.07 1.00 7.53 -51.93 -0.39 0.61 16 38 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.09 1.38 8.01 -51.93 -0.42 0.96 16 40 H 0.08 1.72 7.82 -51.93 -0.41 1.31 16 41 H 0.08 1.83 6.00 -51.93 -0.31 1.52 16 42 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.10 2.48 5.95 -51.93 -0.31 2.17 16 44 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 45 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.06 1.27 7.96 -51.93 -0.41 0.86 16 47 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 48 H 0.05 0.92 6.25 -51.93 -0.32 0.59 16 49 H 0.15 1.82 7.64 -52.48 -0.40 1.42 16 LS Contribution 388.75 15.07 5.86 5.86 Total: -1.00 -32.56 388.75 -9.62 -42.18 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -7.55 Total: 1.82 kcal Atomic # 6 Polarization: 12.33 SS G_CDS: -2.12 Total: 10.21 kcal Atomic # 7 Polarization: -57.17 SS G_CDS: -0.51 Total: -57.68 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: -0.27 Total: -19.03 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.63 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.56 -9.62 -42.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972437287.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.929 kcal (2) G-P(sol) polarization free energy of solvation -32.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds